Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002772

Physical Location & Seq

Genomic Coordinates Reverse (-)

60751094 .. 60752548

Gene Structure 1455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG391200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

ATGAAGAACCCAGTAACAGTACTCACGTCACCACTTTTAACATGTAAGCACAGTTACTTTATAATCTTATCATCACACTCCAACAAAGACAATTCAACATTGTACACTCCAAAGTCTACAATGGAGTCTACACCCCAAAACCTCCTGTGCTTCTTCTTCTTCTTCCTCCTCCACCGCACCACAGCCTCATCACCGCCGCCTCTCTTCCCCAAACAAGCCCTCCCCACAAGGTCAGGCTACCTCCCAGTCAACCCCACGACAAACTCTGCCATATACTACACTTTCTATGAAGCTCAAACCCCAATCTCACCTCTCTCACAAACTCCACTCCTCATTTGGCTCCAGGGCGGCCCCGGCTGCTCCTCCATGATCGGCAACTTCTTCGAGCTCGGTCCCTGGCGCGTCAACTTCCACAAGCACCCCTCCGAGCCCCTTGCCTTGGAGCCCAACTCTGGTTCTTGGAACCGCATTTTCGGCTTGGTTTTTCTTGACAATCCTATAGGCACCGGATTCAGCATCGCTGCGAAGCCCGAAGAGATACCAACTGATCAGTTTGGAGTTGCAAAGCACTTGTTCGCTGCGATCACCAAGTTTGTTGAGCTTGATCCAGCTTTTAAGTCGAGGCGTATTTACATTACTGGGGAGAGCTATGCAGGGAAGTATGTTCCGGCTATTGGTTACTACATTTTGAAGAGGAATGCCGAGTTAAGTGAGTCTAAGCGTGTGAATTTGGGCGGTGTTGCTATCGGAGATGGGCTAACAGACCCGGTGATTCAGGTGGCTACTCATGCTGCGAATACTTACTTCTCTGGTTTGATCAATGAGAGGCAGAAGAGTGAGCTGGAGGAGCTTCAAGTTGCGGCGGTGAGGTTGATTAAGGCGAGGAATTGGCGTGAGGCAACGAATGGCCGAAACAGAGTTTTGAGGAGGTTGCAAAATATGACAGGGCTGGCTACTTTGTATGACTACACAAAGAATGCCGACTACGAAACCAGTTTGGTTGGGGAGTTGTTGAGCCATAAGGAGGTGAAGAAGGCGTTGGGGGTGTCGAATGTGTCCATTGTTTTTGAGGAGTGTAGTGATTTAGTGGGAGATGTGTTGCACGCGGATGTGATGAAGAGTGTGAAATACATGGTGGAGTTTCTTGTGAAGAACAGCAAGGTGTTGCTGTATCAAGGGCAGTATGATCTGCGTGACGGTGTGTTTTCCACCGAGGCTTGGGTGAAGACCATGAAATGGGAAGGGATACAGAAGTTTCTGTCGGCAGATCGGAATGTGTGGAAGTTGGGTGGAGAAACTGCTGGTTATGTTCAGAAATGGGGGAGTTTGAGCCAAGTTGCGGTTTCAGGTGCTGGTCATCTTTTGCCAACTGACCAGCCATTGAGAGCACAGGCAATGATTGAAGACTGGGTTTTGGATAAAGGGTTGTTTGCCAATGTTCATGAGGCTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

484

Amino Acids

53.9

Weight (kDa)

8.61

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	73 - 471	6.3e-98	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15000
fragaria_vesca	FvH4_2g21150 FvH4_2g21240 FvH4_4g32480
malus_domestica	MD13G1025000.v1.1 MD16G1027500.v1.1
prunus_persica	Prupe.1G325200_v2.0.a1
pyrus_communis	pycom16g02330
rosa_chinensis	RchiOBHm_Chr4g0441341 RchiOBHm_Chr6g0287751 RchiOBHm_Chr6g0287771 RchiOBHm_Chr6g0287801
rosa_laevigata	RLG00000006100 RLG00000012469
rosa_multiflora	Rmu_sc0003335.1_g000006 Rmu_sc0003335.1_g000008 Rmu_sc0003877.1_g000008 Rmu_sc0003877.1_g000010 Rmu_sc0008122.1_g000001 Rmu_sc0012909.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382230 Rroxscaffold_7G00181130 Rroxscaffold_7G00181230
rosa_rugosa	Rorug04G0332500 Rorug06G0191600
rosa_samantha	Rh4AG384500 Rh4BG398600 Rh4CG413700 Rh4DG391200 Rh6AG301600 Rh6BG307400 Rh6BG307500 Rh6CG315400 Rh6DG299300 Rh6DG299500 Rh6DG299800 Rh6DG300100
rosa_wichuraiana	Rw4G033190 Rw6G026050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	62
AccB1I	GGYRCC	1 cut(s)	503
AccB7I	CCANNNNNTGG	1 cut(s)	1236
AccI	GTMKAC	2 cut(s)	116, 128
AccII	CGCG	2 cut(s)	402, 1106
AclWI	GGATC	1 cut(s)	599
AcoI	YGGCCR	1 cut(s)	907
AcsI	RAATTY	1 cut(s)	727
AfaI	GTAC	2 cut(s)	21, 104
AfiI	CCNNNNNNNGG	7 cut(s)	439, 452, 674, 1024, 1218, 1236, 1339
AflIII	ACRYGT	1 cut(s)	41
AgsI	TTSAA	4 cut(s)	96, 691, 854, 1403
AjiI	CACGTC	1 cut(s)	27
AjnI	CCWGG	2 cut(s)	342, 395
AjuI	GAANNNNNNNTTGG	2 cut(s)	1022, 1054
AluBI	AGCT	7 cut(s)	293, 388, 601, 611, 648, 841, 850
AluI	AGCT	7 cut(s)	293, 388, 601, 611, 648, 841, 850
Alw21I	GWGCWC	2 cut(s)	390, 1390
AlwI	GGATC	1 cut(s)	599
AlwNI	CAGNNNCTG	1 cut(s)	1352
AoxI	GGCC	2 cut(s)	349, 907
ApeKI	GCWGC	4 cut(s)	357, 521, 578, 791
ApoI	RAATTY	1 cut(s)	727
AspLEI	GCGC	1 cut(s)	402
AspS9I	GGNCC	2 cut(s)	350, 392
AsuC2I	CCSGG	2 cut(s)	354, 767
AsuHPI	GGTGA	8 cut(s)	21, 183, 300, 577, 781, 877, 1039, 1234
AvaII	GGWCC	1 cut(s)	392
BaeI	ACNNNNGTAYC	2 cut(s)	1238, 1271
BanI	GGYRCC	1 cut(s)	503
BanII	GRGCYC	3 cut(s)	390, 432, 447
BbsI	GAAGAC	2 cut(s)	1232, 1410
Bbv12I	GWGCWC	2 cut(s)	390, 1390
BbvI	GCAGC	4 cut(s)	344, 508, 565, 778
BccI	CCATC	1 cut(s)	746
BcgI	CGANNNNNNTGC	4 cut(s)	364, 398, 416, 450
BciT130I	CCWGG	2 cut(s)	344, 397
BciVI	GTATCC	1 cut(s)	1239
BclI	TGATCA	2 cut(s)	547, 816
BcnI	CCSGG	2 cut(s)	354, 767
BfmI	CTRYAG	1 cut(s)	498
BfuI	GTATCC	1 cut(s)	1239
BisI	GCNGC	7 cut(s)	197, 349, 358, 522, 579, 792, 861
BlsI	GCNGC	7 cut(s)	198, 350, 359, 523, 580, 793, 862
BmcAI	AGTACT	1 cut(s)	21
Bme1390I	CCNGG	4 cut(s)	344, 354, 397, 767
Bme18I	GGWCC	1 cut(s)	392
BmgBI	CACGTC	1 cut(s)	27
BmgT120I	GGNCC	2 cut(s)	350, 392
BmiI	GGNNCC	6 cut(s)	341, 352, 394, 444, 464, 505
BmrFI	CCNGG	4 cut(s)	344, 354, 397, 767
BmrI	ACTGGG	4 cut(s)	5, 239, 648, 1417
BmsI	GCATC	1 cut(s)	525
BmuI	ACTGGG	4 cut(s)	5, 239, 648, 1417
BpiI	GAAGAC	2 cut(s)	1232, 1410
BplI	GAGNNNNNCTC	2 cut(s)	434, 466
BpmI	CTGGAG	2 cut(s)	326, 863
BpuMI	CCSGG	2 cut(s)	354, 767
BsaJI	CCNNGG	5 cut(s)	343, 352, 395, 438, 1212
BsaWI	WCCGGW	1 cut(s)	506
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
Bsc4I	CCNNNNNNNGG	7 cut(s)	439, 452, 674, 1024, 1218, 1236, 1339
Bse1I	ACTGG	5 cut(s)	11, 245, 643, 993, 1412
Bse3DI	GCAATG	1 cut(s)	1401
BseBI	CCWGG	2 cut(s)	344, 397
BseDI	CCNNGG	5 cut(s)	343, 352, 395, 438, 1212
BseGI	GGATG	1 cut(s)	1114
BseLI	CCNNNNNNNGG	7 cut(s)	439, 452, 674, 1024, 1218, 1236, 1339
BseMI	GCAATG	1 cut(s)	1401
BseNI	ACTGG	5 cut(s)	11, 245, 643, 993, 1412
BseRI	GAGGAG	6 cut(s)	158, 320, 352, 860, 940, 1085
BseXI	GCAGC	4 cut(s)	344, 508, 565, 778
Bsh1236I	CGCG	2 cut(s)	402, 1106
BshFI	GGCC	2 cut(s)	351, 909
BshNI	GGYRCC	1 cut(s)	503
BsiHKAI	GWGCWC	2 cut(s)	390, 1390
BsiSI	CCGG	4 cut(s)	354, 507, 668, 767
BslFI	GGGAC	1 cut(s)	378
BslI	CCNNNNNNNGG	7 cut(s)	439, 452, 674, 1024, 1218, 1236, 1339
BsmFI	GGGAC	1 cut(s)	378
BsmI	GAATGC	2 cut(s)	703, 982
BsnI	GGCC	2 cut(s)	351, 909
Bsp1286I	GDGCHC	4 cut(s)	390, 432, 447, 1390
Bsp1407I	TGTACA	1 cut(s)	102
Bsp143I	GATC	7 cut(s)	369, 547, 582, 604, 816, 1186, 1267
BspANI	GGCC	2 cut(s)	351, 909
BspFNI	CGCG	2 cut(s)	402, 1106
BspHI	TCATGA	1 cut(s)	1441
BspLI	GGNNCC	6 cut(s)	341, 352, 394, 444, 464, 505
BspPI	GGATC	1 cut(s)	599
BspT107I	GGYRCC	1 cut(s)	503
BsrDI	GCAATG	1 cut(s)	1401
BsrGI	TGTACA	1 cut(s)	102
BsrI	ACTGG	5 cut(s)	11, 245, 643, 993, 1412
BssECI	CCNNGG	5 cut(s)	343, 352, 395, 438, 1212
BssMI	GATC	7 cut(s)	369, 547, 582, 604, 816, 1186, 1267
BssT1I	CCWWGG	1 cut(s)	438
Bst2UI	CCWGG	2 cut(s)	344, 397
Bst4CI	ACNGT	3 cut(s)	19, 53, 1199
Bst6I	CTCTTC	5 cut(s)	209, 528, 686, 827, 1112
BstAUI	TGTACA	1 cut(s)	102
BstC8I	GCNNGC	2 cut(s)	951, 1104
BstDEI	CTNAG	1 cut(s)	717
BstF5I	GGATG	1 cut(s)	1114
BstFNI	CGCG	2 cut(s)	402, 1106
BstHHI	GCGC	1 cut(s)	402
BstKTI	GATC	7 cut(s)	372, 550, 585, 607, 819, 1189, 1270
BstMBI	GATC	7 cut(s)	369, 547, 582, 604, 816, 1186, 1267
BstMWI	GCNNNNNNNGC	5 cut(s)	354, 357, 474, 788, 847
BstNI	CCWGG	2 cut(s)	344, 397
BstNSI	RCATGY	1 cut(s)	45
BstSCI	CCNGG	4 cut(s)	342, 352, 395, 765
BstSFI	CTRYAG	1 cut(s)	498
BstUI	CGCG	2 cut(s)	402, 1106
BstV1I	GCAGC	4 cut(s)	344, 508, 565, 778
BstV2I	GAAGAC	2 cut(s)	1232, 1410
BsuI	GTATCC	1 cut(s)	1239
BsuRI	GGCC	2 cut(s)	351, 909
BtgZI	GCGATG	1 cut(s)	502
BtrI	CACGTC	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	1114
Cac8I	GCNNGC	2 cut(s)	951, 1104
CaiI	CAGNNNCTG	1 cut(s)	1352
CciI	TCATGA	1 cut(s)	1441
CfoI	GCGC	1 cut(s)	402
Cfr13I	GGNCC	2 cut(s)	350, 392
CseI	GACGC	1 cut(s)	391
Csp6I	GTAC	2 cut(s)	20, 103
CviAII	CATG	6 cut(s)	42, 367, 788, 1132, 1231, 1442
CviQI	GTAC	2 cut(s)	20, 103
DdeI	CTNAG	1 cut(s)	717
DpnI	GATC	7 cut(s)	371, 549, 584, 606, 818, 1188, 1269
DpnII	GATC	7 cut(s)	369, 547, 582, 604, 816, 1186, 1267
EaeI	YGGCCR	1 cut(s)	907
Eam1104I	CTCTTC	5 cut(s)	209, 528, 686, 827, 1112
EarI	CTCTTC	5 cut(s)	209, 528, 686, 827, 1112
Ecl136II	GAGCTC	1 cut(s)	388
Eco130I	CCWWGG	1 cut(s)	438
Eco24I	GRGCYC	3 cut(s)	390, 432, 447
Eco47I	GGWCC	1 cut(s)	392
Eco53kI	GAGCTC	1 cut(s)	388
EcoICRI	GAGCTC	1 cut(s)	388
EcoRII	CCWGG	2 cut(s)	342, 395
EcoT14I	CCWWGG	1 cut(s)	438
EcoT38I	GRGCYC	3 cut(s)	390, 432, 447
ErhI	CCWWGG	1 cut(s)	438
FaeI	CATG	6 cut(s)	45, 370, 791, 1135, 1234, 1445
FaqI	GGGAC	1 cut(s)	378
FatI	CATG	6 cut(s)	41, 366, 787, 1131, 1230, 1441
FbaI	TGATCA	2 cut(s)	547, 816
FblI	GTMKAC	2 cut(s)	116, 128
Fnu4HI	GCNGC	7 cut(s)	197, 349, 358, 522, 579, 792, 861
FokI	GGATG	1 cut(s)	1121
FriOI	GRGCYC	3 cut(s)	390, 432, 447
Fsp4HI	GCNGC	7 cut(s)	197, 349, 358, 522, 579, 792, 861
GlaI	GCGC	1 cut(s)	401
GluI	GCNGC	7 cut(s)	197, 349, 358, 522, 579, 792, 861
GsuI	CTGGAG	2 cut(s)	326, 863
HaeIII	GGCC	2 cut(s)	351, 909
HapII	CCGG	4 cut(s)	354, 507, 668, 767
HgaI	GACGC	1 cut(s)	391
HhaI	GCGC	1 cut(s)	402
Hin1II	CATG	6 cut(s)	45, 370, 791, 1135, 1234, 1445
Hin6I	GCGC	1 cut(s)	400
HinP1I	GCGC	1 cut(s)	400
HincII	GTYRAC	2 cut(s)	250, 406
HindII	GTYRAC	2 cut(s)	250, 406
HinfI	GANTC	4 cut(s)	125, 510, 713, 772
HpaII	CCGG	4 cut(s)	354, 507, 668, 767
HphI	GGTGA	8 cut(s)	21, 183, 300, 577, 781, 877, 1039, 1234
Hpy166II	GTNNAC	5 cut(s)	105, 117, 129, 250, 406
Hpy188I	TCNGA	4 cut(s)	427, 749, 1272, 1314
Hpy188III	TCNNGA	2 cut(s)	488, 1442
Hpy8I	GTNNAC	5 cut(s)	105, 117, 129, 250, 406
HpyAV	CCTTC	2 cut(s)	1027, 1235
HpyCH4III	ACNGT	3 cut(s)	19, 53, 1199
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	4 cut(s)	563, 653, 934, 1102
HpyF10VI	GCNNNNNNNGC	5 cut(s)	354, 357, 474, 788, 847
HpyF3I	CTNAG	1 cut(s)	717
HpySE526I	ACGT	1 cut(s)	26
Hsp92II	CATG	6 cut(s)	45, 370, 791, 1135, 1234, 1445
HspAI	GCGC	1 cut(s)	400
Ksp22I	TGATCA	2 cut(s)	547, 816
Kzo9I	GATC	7 cut(s)	369, 547, 582, 604, 816, 1186, 1267
LmnI	GCTCC	4 cut(s)	345, 365, 442, 847
Lsp1109I	GCAGC	4 cut(s)	344, 508, 565, 778
LweI	GCATC	1 cut(s)	525
MaeII	ACGT	1 cut(s)	26
MaeIII	GTNAC	5 cut(s)	13, 27, 53, 677, 1193
MalI	GATC	7 cut(s)	371, 549, 584, 606, 818, 1188, 1269
MboI	GATC	7 cut(s)	369, 547, 582, 604, 816, 1186, 1267
MhlI	GDGCHC	4 cut(s)	390, 432, 447, 1390
MluCI	AATT	3 cut(s)	91, 727, 886
MlyI	GAGTC	2 cut(s)	134, 722
MmeI	TCCRAC	1 cut(s)	105
MseI	TTAA	4 cut(s)	38, 615, 707, 876
MslI	CAYNNNNRTG	1 cut(s)	1107
MspI	CCGG	4 cut(s)	354, 507, 668, 767
MspR9I	CCNGG	4 cut(s)	344, 354, 397, 767
Mva1269I	GAATGC	2 cut(s)	703, 982
MvaI	CCWGG	2 cut(s)	344, 397
MvnI	CGCG	2 cut(s)	402, 1106
MwoI	GCNNNNNNNGC	5 cut(s)	354, 357, 474, 788, 847
NciI	CCSGG	2 cut(s)	354, 767
NdeII	GATC	7 cut(s)	369, 547, 582, 604, 816, 1186, 1267
NlaIII	CATG	6 cut(s)	45, 370, 791, 1135, 1234, 1445
NlaIV	GGNNCC	6 cut(s)	341, 352, 394, 444, 464, 505
NmeAIII	GCCGAG	1 cut(s)	727
NmuCI	GTSAC	2 cut(s)	27, 1193
NspI	RCATGY	1 cut(s)	45
PagI	TCATGA	1 cut(s)	1441
PciI	ACATGT	1 cut(s)	41
PctI	GAATGC	2 cut(s)	703, 982
PfeI	GAWTC	2 cut(s)	510, 772
PflMI	CCANNNNNTGG	1 cut(s)	1236
PkrI	GCNGC	7 cut(s)	198, 350, 359, 523, 580, 793, 862
PleI	GAGTC	2 cut(s)	133, 721
PpsI	GAGTC	2 cut(s)	133, 721
PscI	ACATGT	1 cut(s)	41
PsiI	TTATAA	1 cut(s)	62
Psp124BI	GAGCTC	1 cut(s)	390
Psp6I	CCWGG	2 cut(s)	342, 395
PspGI	CCWGG	2 cut(s)	342, 395
PspN4I	GGNNCC	6 cut(s)	341, 352, 394, 444, 464, 505
PspPI	GGNCC	2 cut(s)	350, 392
PstNI	CAGNNNCTG	1 cut(s)	1352
RsaI	GTAC	2 cut(s)	21, 104
RsaNI	GTAC	2 cut(s)	20, 103
RseI	CAYNNNNRTG	1 cut(s)	1107
SacI	GAGCTC	1 cut(s)	390
SaqAI	TTAA	4 cut(s)	38, 615, 707, 876
SatI	GCNGC	7 cut(s)	197, 349, 358, 522, 579, 792, 861
Sau3AI	GATC	7 cut(s)	369, 547, 582, 604, 816, 1186, 1267
Sau96I	GGNCC	2 cut(s)	350, 392
ScaI	AGTACT	1 cut(s)	21
SchI	GAGTC	2 cut(s)	134, 722
ScrFI	CCNGG	4 cut(s)	344, 354, 397, 767
SduI	GDGCHC	4 cut(s)	390, 432, 447, 1390
SfaNI	GCATC	1 cut(s)	525
SfcI	CTRYAG	1 cut(s)	498
SinI	GGWCC	1 cut(s)	392
SmiMI	CAYNNNNRTG	1 cut(s)	1107
Sse9I	AATT	3 cut(s)	91, 727, 886
SstI	GAGCTC	1 cut(s)	390
StyD4I	CCNGG	4 cut(s)	342, 352, 395, 765
StyI	CCWWGG	1 cut(s)	438
TaaI	ACNGT	3 cut(s)	19, 53, 1199
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	3 cut(s)	384, 620, 1049
TaqII	GACCGA	1 cut(s)	380
TasI	AATT	3 cut(s)	91, 727, 886
TatI	WGTACW	2 cut(s)	19, 102
TauI	GCSGC	3 cut(s)	199, 351, 863
TfiI	GAWTC	2 cut(s)	510, 772
Tru1I	TTAA	4 cut(s)	38, 615, 707, 876
Tru9I	TTAA	4 cut(s)	38, 615, 707, 876
TseFI	GTSAC	2 cut(s)	27, 1193
TseI	GCWGC	4 cut(s)	357, 521, 578, 791
Tsp45I	GTSAC	2 cut(s)	27, 1193
TspDTI	ATGAA	5 cut(s)	17, 303, 1130, 1247, 1430
Van91I	CCANNNNNTGG	1 cut(s)	1236
VpaK11BI	GGWCC	1 cut(s)	392
XapI	RAATTY	1 cut(s)	727
XceI	RCATGY	1 cut(s)	45
XcmI	CCANNNNNNNNNTGG	1 cut(s)	333
XmiI	GTMKAC	2 cut(s)	116, 128
ZrmI	AGTACT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.