Rw6G026050

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
49444109 .. 49445716
1608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G026050.1

Sequence Viewer

Length: 1347 bp
ATGGAGTCAACAACAGTCCTCTGCTTCCTCTTCTTCTTCATCATCCACACCATCACAGCCTCACCACCACCTCTCCTCCCAAAACAAGCCCTCCCCACCAAGTCAGGCTACCTCCCAGTCAACCCCACCACATCCTCTGCAATATTCTACACCTTCTATGAAGCCCAGAACCCAACTTCACCTCTCTCCCAAACCCCACTCCTCATTTGGCTCCAGGGCGGCCCCGGCTGCTCCTCCATGGTCGGCAACTTCTTCGAGCTCGGTCCCTGGCGCGTTAATTTCCACAAACACCCCTCTGATCCCCTCACCTTGGAACCCAACTCTGGTTCCTGGAACCGCATCTTCGGCTTGGTTTTTCTCGACAATCCCATCGGAACCGGGTTCAGTATAGCTTCCTCACCCGAAGAGATTCCAAGAAACCAGTTTGCGGTTGCACAACACCTGTTCGCTGCAATTACCGAGTTCATTGAGCTTGATCCTGTGTTTAGGTCGAGGCCTCTTTACATCACTGGGGAGAGCTATGCAGGCAAGTATATTCCGGCAATTGGGTACTACATTTTGCAGAGGAATATTGATGCTGAGAGTTCTGGGTCCGATCGGCATGTGAATTTATCTGGGGTTGCTGTAGGAAATGGGGAGACAGACCCGGTGATCCAAGTGAAAACTCATGCTGTAAATGCTTACTTTTCGGGTTTGATCAATGAGAGGCAGAAGAGGGAGGTAGAGGAGCTTCAATTTGAGGCAGTGGATTTGTCTAGAGCTGGGAAATGGAGCGAGGCGAAAATTGCAAGAAGCAGAGTGTTGGATAGGTTGCAAGACATGACCGGGTTGCCCACTTTGTATGATACAAGAAGGAATGCTAGCTATGAAACGCATTTGGTTGGGGAGTTATTGAGGAATGAGGAGGTGAGGAAGGCTTTGGGGGTGTCGAATGTGTCCATAGTTTTCGAGGAATGTAGCCATTTGGTGGGGGAGGTATTGCATGAGGATATGATGAAGAGTGTGAAGTACATGGTGGAAGAGTTGGTGAGGAAGAGCAAGGTTTTGTTGTACCAGGGGCAGTTTGATATGAGATGTGGCGTGGTTGCGAATGAGGCTTGGGTGAAGACCATGAAATGGGAGGGGATAGAGAGGTTTCTGTCGGCGGATAGGAGAGTTTGGAGATTGGGTGGAGAGGTTGCTGGTTATGTTCAGAAATGGGGGAGTCTGAGCTTTGTTTTGGTCTCAGGGGCTGGTCATCTTGTGCCTGCTGACCAGCCATTAAGAGCTCAAGCAATGATTGAAGACTGGGTTTTGGGTAAAGGGTTGTTTGCCAATGTGGAGGAGGATAACCTGTCATCAATATGA

Protein Analysis

448

Amino Acids

50.01

Weight (kDa)

5.67

Isoelectric Point (pI)

44.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 30 - 432 1.1e-101 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 967, 1116
AccII CGCG 1 cut(s) 273
AciI CCGC 4 cut(s) 219, 337, 428, 1145
AclWI GGATC 3 cut(s) 293, 470, 646
AcsI RAATTY 1 cut(s) 607
AfaI GTAC 3 cut(s) 551, 1010, 1052
AfiI CCNNNNNNNGG 6 cut(s) 310, 323, 427, 545, 967, 1116
AgsI TTSAA 2 cut(s) 734, 1283
AjnI CCWGG 4 cut(s) 213, 266, 329, 1053
AluBI AGCT 9 cut(s) 259, 392, 472, 519, 730, 761, 864, 1212, 1268
AluI AGCT 9 cut(s) 259, 392, 472, 519, 730, 761, 864, 1212, 1268
Alw21I GWGCWC 2 cut(s) 261, 1270
Alw26I GTCTC 2 cut(s) 632, 1228
AlwI GGATC 3 cut(s) 293, 470, 646
AlwNI CAGNNNCTG 1 cut(s) 1232
AoxI GGCC 2 cut(s) 220, 494
ApeKI GCWGC 2 cut(s) 228, 449
ApoI RAATTY 1 cut(s) 607
Asp700I GAANNNNTTC 1 cut(s) 408
AspLEI GCGC 1 cut(s) 273
AspS9I GGNCC 3 cut(s) 221, 263, 591
AsuC2I CCSGG 4 cut(s) 225, 379, 647, 826
AsuHPI GGTGA 8 cut(s) 54, 171, 298, 390, 661, 919, 1039, 1114
AsuNHI GCTAGC 1 cut(s) 860
AvaII GGWCC 2 cut(s) 263, 591
BanII GRGCYC 2 cut(s) 261, 1270
BarI GAAGNNNNNNTAC 2 cut(s) 714, 746
BbsI GAAGAC 2 cut(s) 1112, 1290
Bbv12I GWGCWC 2 cut(s) 261, 1270
BbvI GCAGC 2 cut(s) 215, 436
BccI CCATC 2 cut(s) 59, 377
BcgI CGANNNNNNTGC 2 cut(s) 235, 269
BciT130I CCWGG 4 cut(s) 215, 268, 331, 1055
BclI TGATCA 1 cut(s) 696
BcnI CCSGG 4 cut(s) 225, 379, 647, 826
BcoDI GTCTC 2 cut(s) 632, 1228
BfaI CTAG 2 cut(s) 756, 861
BfmI CTRYAG 1 cut(s) 624
BisI GCNGC 3 cut(s) 220, 229, 450
BlsI GCNGC 3 cut(s) 221, 230, 451
Bme1390I CCNGG 8 cut(s) 215, 225, 268, 331, 379, 647, 826, 1055
Bme18I GGWCC 2 cut(s) 263, 591
BmgT120I GGNCC 3 cut(s) 221, 263, 591
BmiI GGNNCC 8 cut(s) 212, 223, 265, 315, 328, 335, 376, 592
BmrFI CCNGG 8 cut(s) 215, 225, 268, 331, 379, 647, 826, 1055
BmrI ACTGGG 3 cut(s) 110, 519, 1297
BmsI GCATC 2 cut(s) 348, 565
BmtI GCTAGC 1 cut(s) 864
BmuI ACTGGG 3 cut(s) 110, 519, 1297
BpiI GAAGAC 2 cut(s) 1112, 1290
BpmI CTGGAG 1 cut(s) 197
BpuEI CTTGAG 1 cut(s) 1254
BpuMI CCSGG 4 cut(s) 225, 379, 647, 826
BsaI GGTCTC 1 cut(s) 1228
BsaJI CCNNGG 6 cut(s) 214, 223, 237, 266, 309, 1054
BsaXI ACNNNNNCTCC 8 cut(s) 57, 60, 75, 87, 90, 105, 1153, 1183
Bsc4I CCNNNNNNNGG 6 cut(s) 310, 323, 427, 545, 967, 1116
Bse1I ACTGG 4 cut(s) 116, 421, 514, 1292
Bse3DI GCAATG 1 cut(s) 1281
BseBI CCWGG 4 cut(s) 215, 268, 331, 1055
BseDI CCNNGG 6 cut(s) 214, 223, 237, 266, 309, 1054
BseGI GGATG 2 cut(s) 42, 131
BseLI CCNNNNNNNGG 6 cut(s) 310, 323, 427, 545, 967, 1116
BseMI GCAATG 1 cut(s) 1281
BseMII CTCAG 3 cut(s) 570, 1199, 1239
BseNI ACTGG 4 cut(s) 116, 421, 514, 1292
BseRI GAGGAG 6 cut(s) 65, 191, 223, 740, 917, 1337
BseXI GCAGC 2 cut(s) 215, 436
BseYI CCCAGC 1 cut(s) 761
Bsh1236I CGCG 1 cut(s) 273
Bsh1285I CGRYCG 1 cut(s) 598
BshFI GGCC 2 cut(s) 222, 496
BsiEI CGRYCG 1 cut(s) 598
BsiHKAI GWGCWC 2 cut(s) 261, 1270
BsiSI CCGG 5 cut(s) 225, 378, 539, 647, 825
BslFI GGGAC 1 cut(s) 249
BslI CCNNNNNNNGG 6 cut(s) 310, 323, 427, 545, 967, 1116
BsmAI GTCTC 2 cut(s) 632, 1228
BsmFI GGGAC 1 cut(s) 249
BsmI GAATGC 1 cut(s) 862
BsnI GGCC 2 cut(s) 222, 496
Bso31I GGTCTC 1 cut(s) 1228
Bsp1286I GDGCHC 2 cut(s) 261, 1270
Bsp143I GATC 5 cut(s) 298, 475, 595, 651, 696
Bsp19I CCATGG 1 cut(s) 237
BspACI CCGC 4 cut(s) 219, 337, 428, 1145
BspANI GGCC 2 cut(s) 222, 496
BspCNI CTCAG 3 cut(s) 571, 1200, 1238
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 8 cut(s) 212, 223, 265, 315, 328, 335, 376, 592
BspOI GCTAGC 1 cut(s) 864
BspPI GGATC 3 cut(s) 293, 470, 646
BspQI GCTCTTC 1 cut(s) 1028
BspTNI GGTCTC 1 cut(s) 1228
BsrDI GCAATG 1 cut(s) 1281
BsrI ACTGG 4 cut(s) 116, 421, 514, 1292
BssECI CCNNGG 6 cut(s) 214, 223, 237, 266, 309, 1054
BssMI GATC 5 cut(s) 298, 475, 595, 651, 696
BssT1I CCWWGG 2 cut(s) 237, 309
Bst2UI CCWGG 4 cut(s) 215, 268, 331, 1055
Bst4CI ACNGT 1 cut(s) 16
Bst6I CTCTTC 6 cut(s) 35, 399, 707, 992, 1014, 1028
BstC8I GCNNGC 3 cut(s) 526, 862, 1248
BstDEI CTNAG 3 cut(s) 579, 1208, 1225
BstDSI CCRYGG 1 cut(s) 237
BstF5I GGATG 2 cut(s) 42, 131
BstFNI CGCG 1 cut(s) 273
BstHHI GCGC 1 cut(s) 273
BstKTI GATC 5 cut(s) 301, 478, 598, 654, 699
BstMAI GTCTC 2 cut(s) 632, 1228
BstMBI GATC 5 cut(s) 298, 475, 595, 651, 696
BstMCI CGRYCG 1 cut(s) 598
BstMWI GCNNNNNNNGC 7 cut(s) 225, 228, 345, 525, 677, 785, 1094
BstNI CCWGG 4 cut(s) 215, 268, 331, 1055
BstNSI RCATGY 1 cut(s) 605
BstSCI CCNGG 8 cut(s) 213, 223, 266, 329, 377, 645, 824, 1053
BstSFI CTRYAG 1 cut(s) 624
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 2 cut(s) 215, 436
BstV2I GAAGAC 2 cut(s) 1112, 1290
BsuRI GGCC 2 cut(s) 222, 496
BtgI CCRYGG 1 cut(s) 237
BtsCI GGATG 2 cut(s) 42, 131
BtsI GCAGTG 1 cut(s) 750
BtsIMutI CAGTG 2 cut(s) 507, 750
Cac8I GCNNGC 3 cut(s) 526, 862, 1248
CaiI CAGNNNCTG 1 cut(s) 1232
CfoI GCGC 1 cut(s) 273
Cfr13I GGNCC 3 cut(s) 221, 263, 591
Csp6I GTAC 3 cut(s) 550, 1009, 1051
CviAII CATG 7 cut(s) 238, 602, 668, 820, 983, 1012, 1111
CviQI GTAC 3 cut(s) 550, 1009, 1051
DdeI CTNAG 3 cut(s) 579, 1208, 1225
DpnI GATC 5 cut(s) 300, 477, 597, 653, 698
DpnII GATC 5 cut(s) 298, 475, 595, 651, 696
Eam1104I CTCTTC 6 cut(s) 35, 399, 707, 992, 1014, 1028
EarI CTCTTC 6 cut(s) 35, 399, 707, 992, 1014, 1028
EciI GGCGGA 1 cut(s) 1160
Ecl136II GAGCTC 2 cut(s) 259, 1268
Eco130I CCWWGG 2 cut(s) 237, 309
Eco147I AGGCCT 1 cut(s) 496
Eco24I GRGCYC 2 cut(s) 261, 1270
Eco31I GGTCTC 1 cut(s) 1228
Eco47I GGWCC 2 cut(s) 263, 591
Eco53kI GAGCTC 2 cut(s) 259, 1268
EcoICRI GAGCTC 2 cut(s) 259, 1268
EcoRII CCWGG 4 cut(s) 213, 266, 329, 1053
EcoT14I CCWWGG 2 cut(s) 237, 309
EcoT38I GRGCYC 2 cut(s) 261, 1270
ErhI CCWWGG 2 cut(s) 237, 309
FaeI CATG 7 cut(s) 241, 605, 671, 823, 986, 1015, 1114
FaqI GGGAC 1 cut(s) 249
FatI CATG 7 cut(s) 237, 601, 667, 819, 982, 1011, 1110
FbaI TGATCA 1 cut(s) 696
Fnu4HI GCNGC 3 cut(s) 220, 229, 450
FokI GGATG 2 cut(s) 29, 118
FriOI GRGCYC 2 cut(s) 261, 1270
Fsp4HI GCNGC 3 cut(s) 220, 229, 450
FspBI CTAG 2 cut(s) 756, 861
GlaI GCGC 1 cut(s) 272
GluI GCNGC 3 cut(s) 220, 229, 450
GsaI CCCAGC 1 cut(s) 765
GsuI CTGGAG 1 cut(s) 197
HaeIII GGCC 2 cut(s) 222, 496
HapII CCGG 5 cut(s) 225, 378, 539, 647, 825
HhaI GCGC 1 cut(s) 273
Hin1II CATG 7 cut(s) 241, 605, 671, 823, 986, 1015, 1114
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HincII GTYRAC 2 cut(s) 9, 121
HindII GTYRAC 2 cut(s) 9, 121
HinfI GANTC 3 cut(s) 5, 409, 1204
HpaII CCGG 5 cut(s) 225, 378, 539, 647, 825
HphI GGTGA 8 cut(s) 54, 171, 298, 390, 661, 919, 1039, 1114
Hpy166II GTNNAC 2 cut(s) 9, 121
Hpy188I TCNGA 5 cut(s) 298, 374, 595, 1194, 1209
Hpy188III TCNNGA 2 cut(s) 359, 756
Hpy8I GTNNAC 2 cut(s) 9, 121
HpyAV CCTTC 3 cut(s) 163, 846, 907
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4V TGCA 8 cut(s) 140, 434, 452, 524, 562, 788, 814, 982
HpyF10VI GCNNNNNNNGC 7 cut(s) 225, 228, 345, 525, 677, 785, 1094
HpyF3I CTNAG 3 cut(s) 579, 1208, 1225
Hsp92II CATG 7 cut(s) 241, 605, 671, 823, 986, 1015, 1114
HspAI GCGC 1 cut(s) 271
Ksp22I TGATCA 1 cut(s) 696
Kzo9I GATC 5 cut(s) 298, 475, 595, 651, 696
LguI GCTCTTC 1 cut(s) 1028
LmnI GCTCC 4 cut(s) 216, 236, 727, 771
Lsp1109I GCAGC 2 cut(s) 215, 436
LweI GCATC 2 cut(s) 348, 565
MaeI CTAG 2 cut(s) 756, 861
MalI GATC 5 cut(s) 300, 477, 597, 653, 698
MboI GATC 5 cut(s) 298, 475, 595, 651, 696
MfeI CAATTG 1 cut(s) 543
MhlI GDGCHC 2 cut(s) 261, 1270
MluCI AATT 6 cut(s) 277, 453, 543, 607, 734, 783
MlyI GAGTC 2 cut(s) 14, 1213
MmeI TCCRAC 1 cut(s) 783
MroXI GAANNNNTTC 1 cut(s) 408
MseI TTAA 2 cut(s) 276, 1262
MslI CAYNNNNRTG 1 cut(s) 1342
MspI CCGG 5 cut(s) 225, 378, 539, 647, 825
MspR9I CCNGG 8 cut(s) 215, 225, 268, 331, 379, 647, 826, 1055
MunI CAATTG 1 cut(s) 543
Mva1269I GAATGC 1 cut(s) 862
MvaI CCWGG 4 cut(s) 215, 268, 331, 1055
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 7 cut(s) 225, 228, 345, 525, 677, 785, 1094
NciI CCSGG 4 cut(s) 225, 379, 647, 826
NcoI CCATGG 1 cut(s) 237
NdeII GATC 5 cut(s) 298, 475, 595, 651, 696
NheI GCTAGC 1 cut(s) 860
NlaIII CATG 7 cut(s) 241, 605, 671, 823, 986, 1015, 1114
NlaIV GGNNCC 8 cut(s) 212, 223, 265, 315, 328, 335, 376, 592
NspI RCATGY 1 cut(s) 605
PceI AGGCCT 1 cut(s) 496
PciSI GCTCTTC 1 cut(s) 1028
PctI GAATGC 1 cut(s) 862
PdmI GAANNNNTTC 1 cut(s) 408
PfeI GAWTC 1 cut(s) 409
PflMI CCANNNNNTGG 2 cut(s) 967, 1116
PfoI TCCNGGA 1 cut(s) 329
PkrI GCNGC 3 cut(s) 221, 230, 451
Ple19I CGATCG 1 cut(s) 598
PleI GAGTC 2 cut(s) 13, 1212
PpsI GAGTC 2 cut(s) 13, 1212
Psp124BI GAGCTC 2 cut(s) 261, 1270
Psp6I CCWGG 4 cut(s) 213, 266, 329, 1053
PspFI CCCAGC 1 cut(s) 761
PspGI CCWGG 4 cut(s) 213, 266, 329, 1053
PspN4I GGNNCC 8 cut(s) 212, 223, 265, 315, 328, 335, 376, 592
PspPI GGNCC 3 cut(s) 221, 263, 591
PstNI CAGNNNCTG 1 cut(s) 1232
PvuI CGATCG 1 cut(s) 598
RsaI GTAC 3 cut(s) 551, 1010, 1052
RsaNI GTAC 3 cut(s) 550, 1009, 1051
RseI CAYNNNNRTG 1 cut(s) 1342
SacI GAGCTC 2 cut(s) 261, 1270
SapI GCTCTTC 1 cut(s) 1028
SaqAI TTAA 2 cut(s) 276, 1262
SatI GCNGC 3 cut(s) 220, 229, 450
Sau3AI GATC 5 cut(s) 298, 475, 595, 651, 696
Sau96I GGNCC 3 cut(s) 221, 263, 591
SchI GAGTC 2 cut(s) 14, 1213
ScrFI CCNGG 8 cut(s) 215, 225, 268, 331, 379, 647, 826, 1055
SduI GDGCHC 2 cut(s) 261, 1270
SfaNI GCATC 2 cut(s) 348, 565
SfcI CTRYAG 1 cut(s) 624
SinI GGWCC 2 cut(s) 263, 591
SmiMI CAYNNNNRTG 1 cut(s) 1342
SmlI CTYRAG 1 cut(s) 1269
SmoI CTYRAG 1 cut(s) 1269
Sse9I AATT 6 cut(s) 277, 453, 543, 607, 734, 783
SseBI AGGCCT 1 cut(s) 496
SsiI CCGC 4 cut(s) 219, 337, 428, 1145
SspI AATATT 2 cut(s) 144, 571
SspMI CTAG 2 cut(s) 756, 861
SstI GAGCTC 2 cut(s) 261, 1270
StuI AGGCCT 1 cut(s) 496
StyD4I CCNGG 8 cut(s) 213, 223, 266, 329, 377, 645, 824, 1053
StyI CCWWGG 2 cut(s) 237, 309
TaaI ACNGT 1 cut(s) 16
TaqI TCGA 5 cut(s) 255, 360, 491, 929, 948
TaqII GACCGA 1 cut(s) 251
TasI AATT 6 cut(s) 277, 453, 543, 607, 734, 783
TatI WGTACW 1 cut(s) 1008
TauI GCSGC 1 cut(s) 222
TfiI GAWTC 1 cut(s) 409
Tru1I TTAA 2 cut(s) 276, 1262
Tru9I TTAA 2 cut(s) 276, 1262
TscAI CASTG 2 cut(s) 514, 750
TseI GCWGC 2 cut(s) 228, 449
TspDTI ATGAA 6 cut(s) 28, 174, 454, 882, 1010, 1127
TspRI CASTG 2 cut(s) 514, 750
Van91I CCANNNNNTGG 2 cut(s) 967, 1116
VpaK11BI GGWCC 2 cut(s) 263, 591
XapI RAATTY 1 cut(s) 607
XbaI TCTAGA 1 cut(s) 755
XceI RCATGY 1 cut(s) 605
XcmI CCANNNNNNNNNTGG 1 cut(s) 204
XmnI GAANNNNTTC 1 cut(s) 408
XspI CTAG 2 cut(s) 756, 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.