Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003877.1

Orthogroup ID

OG0002772

Physical Location & Seq

Genomic Coordinates Forward (+)

69250 .. 71826

Gene Structure 2577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003877.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

atgaatgcagctgactggatcaagcctgtgaagtgtttaatacttgtcaccagggaagaagcggccaagctaaaagaaaggaaaaaaaaaaggaaagaaggaagcccaaaagcccagaggcccactgacgtaggcccactgccacatcagcatcagaccccactgccacgtcagcacccagggacccactgccacgtcagcatcaggaccccactaggccactaccatgtcagcacggaccccactgccacatcagcaccggtcaacgctgctgactggtcaactttccggcgacttttccggccatttttccgacgactttttctgaccacttttgccggtcaaaatttccggatgagtaacctgaacaaattggactttgctccattgggaacaactggctctgaatatcacagccaggacgtgctaactgttgagcaagctcaagttttggaagcaaatagagcagccttagaggtaaataaggtgaaagccatcatcctaatgactcgtcatatggatttagctggggttgctataggaaatggggagacagacccggtgatccaagtgaaaactcatgatgtaaatgcttacttttcgggtttgatcaatgagaggcagaagagggaggtagaggagcttcaatttgaggcagtggagttgtctagagctgggaaatggagcgaggcgaaaattgcaagaagcagagtgttggataggttgcaagacatgaccgcccactttgaatgtagccatttggtgggggaggtattgcatgaggatatgatgaagagtgtgaagtacatggtggaagagttggtgaggaagagcaaggttttgttgtaccaggggcagtttgatatgagatgcgaggggcagtttgatatgagatcctattttgccggttcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

304

Amino Acids

34.6

Weight (kDa)

9.2

Isoelectric Point (pI)

41.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15000
fragaria_vesca	FvH4_2g21150 FvH4_2g21240 FvH4_4g32480
malus_domestica	MD13G1025000.v1.1 MD16G1027500.v1.1
prunus_persica	Prupe.1G325200_v2.0.a1
pyrus_communis	pycom16g02330
rosa_chinensis	RchiOBHm_Chr4g0441341 RchiOBHm_Chr6g0287751 RchiOBHm_Chr6g0287771 RchiOBHm_Chr6g0287801
rosa_laevigata	RLG00000006100 RLG00000012469
rosa_multiflora	Rmu_sc0003335.1_g000006 Rmu_sc0003335.1_g000008 Rmu_sc0003877.1_g000008 Rmu_sc0003877.1_g000010 Rmu_sc0008122.1_g000001 Rmu_sc0012909.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382230 Rroxscaffold_7G00181130 Rroxscaffold_7G00181230
rosa_rugosa	Rorug04G0332500 Rorug06G0191600
rosa_samantha	Rh4AG384500 Rh4BG398600 Rh4CG413700 Rh4DG391200 Rh6AG301600 Rh6BG307400 Rh6BG307500 Rh6CG315400 Rh6DG299300 Rh6DG299500 Rh6DG299800 Rh6DG300100
rosa_wichuraiana	Rw4G033190 Rw6G026050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	763
AccIII	TCCGGA	1 cut(s)	351
AciI	CCGC	2 cut(s)	62, 738
AclWI	GGATC	3 cut(s)	26, 559, 888
AcoI	YGGCCR	2 cut(s)	63, 302
AcsI	RAATTY	1 cut(s)	346
AfaI	GTAC	2 cut(s)	806, 848
AfiI	CCNNNNNNNGG	1 cut(s)	763
AgeI	ACCGGT	1 cut(s)	259
AgsI	TTSAA	2 cut(s)	647, 749
AjiI	CACGTC	3 cut(s)	170, 196, 424
AjnI	CCWGG	4 cut(s)	50, 178, 417, 849
AluBI	AGCT	6 cut(s)	11, 70, 443, 527, 643, 674
AluI	AGCT	6 cut(s)	11, 70, 443, 527, 643, 674
Alw26I	GTCTC	1 cut(s)	545
AlwI	GGATC	3 cut(s)	26, 559, 888
Aor13HI	TCCGGA	1 cut(s)	351
AoxI	GGCC	5 cut(s)	63, 119, 133, 217, 302
ApeKI	GCWGC	3 cut(s)	8, 269, 467
ApoI	RAATTY	1 cut(s)	346
AsiGI	ACCGGT	1 cut(s)	259
AspS9I	GGNCC	5 cut(s)	120, 134, 183, 207, 238
AsuC2I	CCSGG	1 cut(s)	560
AsuHPI	GGTGA	4 cut(s)	40, 499, 574, 835
AvaII	GGWCC	3 cut(s)	183, 207, 238
BarI	GAAGNNNNNNTAC	2 cut(s)	627, 659
BbvI	GCAGC	3 cut(s)	20, 256, 479
BccI	CCATC	1 cut(s)	503
BciT130I	CCWGG	4 cut(s)	52, 180, 419, 851
BclI	TGATCA	1 cut(s)	609
BcnI	CCSGG	1 cut(s)	560
BcoDI	GTCTC	1 cut(s)	545
BfaI	CTAG	2 cut(s)	215, 669
BfmI	CTRYAG	1 cut(s)	537
BisI	GCNGC	4 cut(s)	9, 63, 270, 468
BlsI	GCNGC	4 cut(s)	10, 64, 271, 469
Bme1390I	CCNGG	5 cut(s)	52, 180, 419, 560, 851
Bme18I	GGWCC	3 cut(s)	183, 207, 238
BmgBI	CACGTC	3 cut(s)	170, 196, 424
BmgT120I	GGNCC	5 cut(s)	120, 134, 183, 207, 238
BmiI	GGNNCC	4 cut(s)	184, 185, 209, 240
BmrFI	CCNGG	5 cut(s)	52, 180, 419, 560, 851
BmsI	GCATC	3 cut(s)	160, 210, 860
BpuEI	CTTGAG	1 cut(s)	429
BpuMI	CCSGG	1 cut(s)	560
BsaJI	CCNNGG	4 cut(s)	51, 178, 179, 850
BsaWI	WCCGGW	2 cut(s)	259, 351
Bsc4I	CCNNNNNNNGG	1 cut(s)	763
Bse118I	RCCGGY	3 cut(s)	259, 338, 905
Bse1I	ACTGG	3 cut(s)	20, 281, 403
BseAI	TCCGGA	1 cut(s)	351
BseBI	CCWGG	4 cut(s)	52, 180, 419, 851
BseDI	CCNNGG	4 cut(s)	51, 178, 179, 850
BseGI	GGATG	2 cut(s)	360, 498
BseLI	CCNNNNNNNGG	1 cut(s)	763
BseNI	ACTGG	3 cut(s)	20, 281, 403
BseRI	GAGGAG	1 cut(s)	653
BseXI	GCAGC	3 cut(s)	20, 256, 479
BseYI	CCCAGC	2 cut(s)	527, 674
BshFI	GGCC	5 cut(s)	65, 121, 135, 219, 304
BshTI	ACCGGT	1 cut(s)	259
BsiSI	CCGG	7 cut(s)	260, 289, 301, 339, 352, 560, 906
BslFI	GGGAC	1 cut(s)	196
BslI	CCNNNNNNNGG	1 cut(s)	763
BsmAI	GTCTC	1 cut(s)	545
BsmFI	GGGAC	1 cut(s)	196
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	5 cut(s)	65, 121, 135, 219, 304
Bsp13I	TCCGGA	1 cut(s)	351
Bsp143I	GATC	4 cut(s)	18, 564, 609, 893
BspACI	CCGC	2 cut(s)	62, 738
BspANI	GGCC	5 cut(s)	65, 121, 135, 219, 304
BspEI	TCCGGA	1 cut(s)	351
BspHI	TCATGA	1 cut(s)	580
BspLI	GGNNCC	4 cut(s)	184, 185, 209, 240
BspPI	GGATC	3 cut(s)	26, 559, 888
BspQI	GCTCTTC	1 cut(s)	824
BsrFI	RCCGGY	3 cut(s)	259, 338, 905
BsrI	ACTGG	3 cut(s)	20, 281, 403
BssAI	RCCGGY	3 cut(s)	259, 338, 905
BssECI	CCNNGG	4 cut(s)	51, 178, 179, 850
BssMI	GATC	4 cut(s)	18, 564, 609, 893
Bst2UI	CCWGG	4 cut(s)	52, 180, 419, 851
Bst4CI	ACNGT	1 cut(s)	433
Bst6I	CTCTTC	4 cut(s)	620, 788, 810, 824
BstC8I	GCNNGC	1 cut(s)	441
BstDEI	CTNAG	2 cut(s)	472, 912
BstF5I	GGATG	2 cut(s)	360, 498
BstKTI	GATC	4 cut(s)	21, 567, 612, 896
BstMAI	GTCTC	1 cut(s)	545
BstMBI	GATC	4 cut(s)	18, 564, 609, 893
BstMWI	GCNNNNNNNGC	7 cut(s)	148, 172, 198, 254, 464, 533, 698
BstNI	CCWGG	4 cut(s)	52, 180, 419, 851
BstSCI	CCNGG	5 cut(s)	50, 178, 417, 558, 849
BstSFI	CTRYAG	1 cut(s)	537
BstV1I	GCAGC	3 cut(s)	20, 256, 479
BstX2I	RGATCY	1 cut(s)	893
BstYI	RGATCY	1 cut(s)	893
BsuRI	GGCC	5 cut(s)	65, 121, 135, 219, 304
BtrI	CACGTC	3 cut(s)	170, 196, 424
BtsCI	GGATG	2 cut(s)	360, 498
BtsI	GCAGTG	5 cut(s)	137, 161, 187, 243, 663
BtsIMutI	CAGTG	6 cut(s)	123, 137, 161, 187, 243, 663
Cac8I	GCNNGC	1 cut(s)	441
CciI	TCATGA	1 cut(s)	580
Cfr10I	RCCGGY	3 cut(s)	259, 338, 905
Cfr13I	GGNCC	5 cut(s)	120, 134, 183, 207, 238
Csp6I	GTAC	2 cut(s)	805, 847
CspAI	ACCGGT	1 cut(s)	259
CviAII	CATG	5 cut(s)	227, 581, 733, 779, 808
CviQI	GTAC	2 cut(s)	805, 847
DdeI	CTNAG	2 cut(s)	472, 912
DpnI	GATC	4 cut(s)	20, 566, 611, 895
DpnII	GATC	4 cut(s)	18, 564, 609, 893
EaeI	YGGCCR	2 cut(s)	63, 302
Eam1104I	CTCTTC	4 cut(s)	620, 788, 810, 824
EarI	CTCTTC	4 cut(s)	620, 788, 810, 824
Eco47I	GGWCC	3 cut(s)	183, 207, 238
EcoO109I	RGGNCCY	2 cut(s)	183, 207
EcoRII	CCWGG	4 cut(s)	50, 178, 417, 849
FaeI	CATG	5 cut(s)	230, 584, 736, 782, 811
FaqI	GGGAC	1 cut(s)	196
FatI	CATG	5 cut(s)	226, 580, 732, 778, 807
FauNDI	CATATG	1 cut(s)	516
FbaI	TGATCA	1 cut(s)	609
Fnu4HI	GCNGC	4 cut(s)	9, 63, 270, 468
FokI	GGATG	2 cut(s)	367, 485
Fsp4HI	GCNGC	4 cut(s)	9, 63, 270, 468
FspBI	CTAG	2 cut(s)	215, 669
GluI	GCNGC	4 cut(s)	9, 63, 270, 468
GsaI	CCCAGC	2 cut(s)	531, 678
HaeIII	GGCC	5 cut(s)	65, 121, 135, 219, 304
HapII	CCGG	7 cut(s)	260, 289, 301, 339, 352, 560, 906
Hin1II	CATG	5 cut(s)	230, 584, 736, 782, 811
HincII	GTYRAC	2 cut(s)	265, 282
HindII	GTYRAC	2 cut(s)	265, 282
HinfI	GANTC	1 cut(s)	508
HpaII	CCGG	7 cut(s)	260, 289, 301, 339, 352, 560, 906
HphI	GGTGA	4 cut(s)	40, 499, 574, 835
Hpy166II	GTNNAC	2 cut(s)	265, 282
Hpy188I	TCNGA	4 cut(s)	156, 314, 327, 406
Hpy188III	TCNNGA	4 cut(s)	205, 352, 581, 669
Hpy8I	GTNNAC	2 cut(s)	265, 282
Hpy99I	CGWCG	1 cut(s)	318
HpyAV	CCTTC	1 cut(s)	92
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4IV	ACGT	4 cut(s)	129, 169, 195, 423
HpyCH4V	TGCA	4 cut(s)	8, 701, 727, 778
HpyF10VI	GCNNNNNNNGC	7 cut(s)	148, 172, 198, 254, 464, 533, 698
HpyF3I	CTNAG	2 cut(s)	472, 912
HpySE526I	ACGT	4 cut(s)	129, 169, 195, 423
Hsp92II	CATG	5 cut(s)	230, 584, 736, 782, 811
KflI	GGGWCCC	1 cut(s)	183
Kpn2I	TCCGGA	1 cut(s)	351
Ksp22I	TGATCA	1 cut(s)	609
Kzo9I	GATC	4 cut(s)	18, 564, 609, 893
LguI	GCTCTTC	1 cut(s)	824
LmnI	GCTCC	3 cut(s)	388, 640, 684
Lsp1109I	GCAGC	3 cut(s)	20, 256, 479
LweI	GCATC	3 cut(s)	160, 210, 860
MaeI	CTAG	2 cut(s)	215, 669
MaeII	ACGT	4 cut(s)	129, 169, 195, 423
MaeIII	GTNAC	2 cut(s)	46, 359
MalI	GATC	4 cut(s)	20, 566, 611, 895
MboI	GATC	4 cut(s)	18, 564, 609, 893
MboII	GAAGA	5 cut(s)	68, 637, 805, 827, 841
MflI	RGATCY	1 cut(s)	893
MluCI	AATT	4 cut(s)	346, 371, 647, 696
MlyI	GAGTC	1 cut(s)	502
MmeI	TCCRAC	2 cut(s)	337, 696
MroI	TCCGGA	1 cut(s)	351
MseI	TTAA	1 cut(s)	38
MslI	CAYNNNNRTG	2 cut(s)	225, 503
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	7 cut(s)	260, 289, 301, 339, 352, 560, 906
MspR9I	CCNGG	5 cut(s)	52, 180, 419, 560, 851
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	4 cut(s)	52, 180, 419, 851
MwoI	GCNNNNNNNGC	7 cut(s)	148, 172, 198, 254, 464, 533, 698
NciI	CCSGG	1 cut(s)	560
NdeI	CATATG	1 cut(s)	516
NdeII	GATC	4 cut(s)	18, 564, 609, 893
NlaIII	CATG	5 cut(s)	230, 584, 736, 782, 811
NlaIV	GGNNCC	4 cut(s)	184, 185, 209, 240
NmuCI	GTSAC	1 cut(s)	46
PagI	TCATGA	1 cut(s)	580
PasI	CCCWGGG	1 cut(s)	179
PciSI	GCTCTTC	1 cut(s)	824
PctI	GAATGC	1 cut(s)	10
PflMI	CCANNNNNTGG	1 cut(s)	763
PinAI	ACCGGT	1 cut(s)	259
PkrI	GCNGC	4 cut(s)	10, 64, 271, 469
PleI	GAGTC	1 cut(s)	502
PpsI	GAGTC	1 cut(s)	502
PpuMI	RGGWCCY	2 cut(s)	183, 207
Psp5II	RGGWCCY	2 cut(s)	183, 207
Psp6I	CCWGG	4 cut(s)	50, 178, 417, 849
PspFI	CCCAGC	2 cut(s)	527, 674
PspGI	CCWGG	4 cut(s)	50, 178, 417, 849
PspN4I	GGNNCC	4 cut(s)	184, 185, 209, 240
PspPI	GGNCC	5 cut(s)	120, 134, 183, 207, 238
PspPPI	RGGWCCY	2 cut(s)	183, 207
PsuI	RGATCY	1 cut(s)	893
PvuII	CAGCTG	1 cut(s)	11
RsaI	GTAC	2 cut(s)	806, 848
RsaNI	GTAC	2 cut(s)	805, 847
RseI	CAYNNNNRTG	2 cut(s)	225, 503
SapI	GCTCTTC	1 cut(s)	824
SaqAI	TTAA	1 cut(s)	38
SatI	GCNGC	4 cut(s)	9, 63, 270, 468
Sau3AI	GATC	4 cut(s)	18, 564, 609, 893
Sau96I	GGNCC	5 cut(s)	120, 134, 183, 207, 238
SchI	GAGTC	1 cut(s)	502
ScrFI	CCNGG	5 cut(s)	52, 180, 419, 560, 851
SfaNI	GCATC	3 cut(s)	160, 210, 860
SfcI	CTRYAG	1 cut(s)	537
SinI	GGWCC	3 cut(s)	183, 207, 238
SmiMI	CAYNNNNRTG	2 cut(s)	225, 503
SmlI	CTYRAG	1 cut(s)	444
SmoI	CTYRAG	1 cut(s)	444
Sse9I	AATT	4 cut(s)	346, 371, 647, 696
SsiI	CCGC	2 cut(s)	62, 738
SspMI	CTAG	2 cut(s)	215, 669
StyD4I	CCNGG	5 cut(s)	50, 178, 417, 558, 849
TaaI	ACNGT	1 cut(s)	433
TaiI	ACGT	4 cut(s)	132, 172, 198, 426
TasI	AATT	4 cut(s)	346, 371, 647, 696
TatI	WGTACW	1 cut(s)	804
TauI	GCSGC	1 cut(s)	65
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TscAI	CASTG	6 cut(s)	130, 144, 168, 194, 250, 663
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	3 cut(s)	8, 269, 467
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	2 cut(s)	17, 806
TspGWI	ACGGA	1 cut(s)	251
TspRI	CASTG	6 cut(s)	130, 144, 168, 194, 250, 663
Van91I	CCANNNNNTGG	1 cut(s)	763
VpaK11BI	GGWCC	3 cut(s)	183, 207, 238
XapI	RAATTY	1 cut(s)	346
XbaI	TCTAGA	1 cut(s)	668
XspI	CTAG	2 cut(s)	215, 669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.