Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002772

Physical Location & Seq

Genomic Coordinates Reverse (-)

31111809 .. 31113158

Gene Structure 1350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g32480.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGGAATCAACACCCCCAAACCTCCTCTGCTTACTATGTTTCCTCCTCCTCCTCCTCCTCCTCCTCCACCGCACCACAGCCTCATCACCGCCGCCTCTCCTCCCCAAACAAGCCCTCCCCACAAAGTCAGGTTACCTCCCAGTAAACCCCACCTCAAACTCAGCCATATACTACACTTTCTATGAAGCTCAAACCCCAATCTCACCTCTCTCACAAACTCCACTCCTCATTTGGCTCCAGGGCGGCCCCGGCTGCTCCTCCATGATCGGCAACTTCTTCGAGCTTGGTCCATGGCGCGTGAACTTCCACAAGAAGCCCTCCGAGCCACTCGCCTTGGAGCCCAACTCTGGTTCTTGGAACCGCATTTTCGGCTTGCTTTTTCTGGACAATCCCATCGGATCAGGATTCAGCATAGCTGCGAAGCCCGAAGAGATACCAACTAATCAGCTTGGAGTTGCTAAACACTTGTTTACTGCAATCACCAAGTTCGTTGAGCTTGATCCTGCTTTTAAGTCGAGGCCTATTTACATTACTGGCGAGAGCTATGCAGGGAAGTATATTCCGGCTATTGGCTACTACATTTTGAAGAGGAATGCCGAGCTGAGTGAGTCTAAGCGTGTGAATTTAGGCGGTGTTGCTATAGGAGATGGCTTGACAGACCCGGTGATTCAGGTGACAACTCATGCTGATAATGCTTACTACTCTGGTTTGATCAATGAAAGGCAGAAGGGTGAGCTGGAGGAGCTTCAACATGAGGCGGTGAGGCTGATTAAGGCCATGAATTGGAGTGCGGCAACAGATGGTCGAAACAGAGTTTTGAGGAGGCTGCAAAATATGACAGGGCTGGCTACTTTGTATGACTACACAAAGAATGCCGACTACGCGACTAGTTTGGTTGAGGACTTGTTGAGCCACAAGGAAGTGAAGAAGGCATTGGGGGTGTCAAATGTGTCGACTGTTTTCGAGGAGTGTAGTGATTTGGTGGGAGATGTGTTGCATGCGGATGTGATGAAGAGTGTGAAGTACATGGTGGAGTTTCTTGTGAAGAACAGCAAGGTGTTGTTGTATCAAGGCCAGTATGATTTGCGAGATGGTGTGTATGGCACGGAGGCTTGGGTAAAGACCATGAAATGGGAAGGGATAGAGAAGTATCTGGCGGCGGATCGGAATGTGTGGAAGTTGGGTGGAGAGACTGCTGGTTATGTTCAGAAATGGGGGAGTTTGAGCCAAGTTGTGGTTTCTGGTGCAGGTCATCTTTTGCCTACAGACCAGCCATTGAGAGCTCAGGCTATGATTGAAGACTGGGTTTTAGATAAAGGGCTGTTTGCCAATGTTCAAGAGGATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

450

Amino Acids

49.72

Weight (kDa)

6.11

Isoelectric Point (pI)

37.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	38 - 436	1.5e-99	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15000
fragaria_vesca	FvH4_2g21150 FvH4_2g21240 FvH4_4g32480
malus_domestica	MD13G1025000.v1.1 MD16G1027500.v1.1
prunus_persica	Prupe.1G325200_v2.0.a1
pyrus_communis	pycom16g02330
rosa_chinensis	RchiOBHm_Chr4g0441341 RchiOBHm_Chr6g0287751 RchiOBHm_Chr6g0287771 RchiOBHm_Chr6g0287801
rosa_laevigata	RLG00000006100 RLG00000012469
rosa_multiflora	Rmu_sc0003335.1_g000006 Rmu_sc0003335.1_g000008 Rmu_sc0003877.1_g000008 Rmu_sc0003877.1_g000010 Rmu_sc0008122.1_g000001 Rmu_sc0012909.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382230 Rroxscaffold_7G00181130 Rroxscaffold_7G00181230
rosa_rugosa	Rorug04G0332500 Rorug06G0191600
rosa_samantha	Rh4AG384500 Rh4BG398600 Rh4CG413700 Rh4DG391200 Rh6AG301600 Rh6BG307400 Rh6BG307500 Rh6CG315400 Rh6DG299300 Rh6DG299500 Rh6DG299800 Rh6DG300100
rosa_wichuraiana	Rw4G033190 Rw6G026050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1238
AccB7I	CCANNNNNTGG	3 cut(s)	783, 1131, 1234
AccI	GTMKAC	1 cut(s)	953
AccII	CGCG	2 cut(s)	297, 884
AclWI	GGATC	3 cut(s)	406, 494, 1170
AcsI	RAATTY	1 cut(s)	622
AfaI	GTAC	1 cut(s)	1025
AfiI	CCNNNNNNNGG	5 cut(s)	347, 569, 783, 1131, 1234
AgsI	TTSAA	4 cut(s)	586, 749, 1298, 1337
AhlI	ACTAGT	1 cut(s)	887
AjnI	CCWGG	1 cut(s)	237
AjuI	GAANNNNNNNTTGG	2 cut(s)	917, 949
Alw21I	GWGCWC	1 cut(s)	1285
Alw26I	GTCTC	1 cut(s)	1184
AlwI	GGATC	3 cut(s)	406, 494, 1170
AoxI	GGCC	4 cut(s)	244, 518, 774, 1072
ApeKI	GCWGC	3 cut(s)	252, 416, 826
ApoI	RAATTY	1 cut(s)	622
AspLEI	GCGC	1 cut(s)	297
AspS9I	GGNCC	2 cut(s)	245, 287
AsuC2I	CCSGG	2 cut(s)	249, 662
AsuHPI	GGTGA	7 cut(s)	78, 195, 472, 676, 685, 743, 772
AvaII	GGWCC	1 cut(s)	287
BanII	GRGCYC	2 cut(s)	342, 1285
BbsI	GAAGAC	1 cut(s)	1305
Bbv12I	GWGCWC	1 cut(s)	1285
BbvI	GCAGC	3 cut(s)	239, 403, 813
BccI	CCATC	4 cut(s)	401, 641, 794, 1085
BcgI	CGANNNNNNTGC	4 cut(s)	259, 293, 527, 561
BciT130I	CCWGG	1 cut(s)	239
BclI	TGATCA	1 cut(s)	711
BcnI	CCSGG	2 cut(s)	249, 662
BcoDI	GTCTC	1 cut(s)	1184
BcuI	ACTAGT	1 cut(s)	887
BfaI	CTAG	1 cut(s)	888
BfmI	CTRYAG	2 cut(s)	639, 1263
BfuAI	ACCTGC	1 cut(s)	1238
BisI	GCNGC	7 cut(s)	92, 244, 253, 417, 792, 827, 1158
BlsI	GCNGC	7 cut(s)	93, 245, 254, 418, 793, 828, 1159
Bme1390I	CCNGG	3 cut(s)	239, 249, 662
Bme18I	GGWCC	1 cut(s)	287
BmgT120I	GGNCC	2 cut(s)	245, 287
BmiI	GGNNCC	4 cut(s)	236, 247, 339, 359
BmrFI	CCNGG	3 cut(s)	239, 249, 662
BmrI	ACTGGG	2 cut(s)	134, 1312
BmuI	ACTGGG	2 cut(s)	134, 1312
BpiI	GAAGAC	1 cut(s)	1305
BplI	GAGNNNNNCTC	2 cut(s)	329, 361
BpmI	CTGGAG	2 cut(s)	221, 758
Bpu10I	CCTNAGC	1 cut(s)	1284
BpuMI	CCSGG	2 cut(s)	249, 662
BsaJI	CCNNGG	4 cut(s)	238, 247, 290, 333
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	5 cut(s)	347, 569, 783, 1131, 1234
Bse1I	ACTGG	4 cut(s)	140, 538, 1075, 1307
BseBI	CCWGG	1 cut(s)	239
BseDI	CCNNGG	4 cut(s)	238, 247, 290, 333
BseGI	GGATG	1 cut(s)	1009
BseLI	CCNNNNNNNGG	5 cut(s)	347, 569, 783, 1131, 1234
BseMII	CTCAG	3 cut(s)	174, 593, 1298
BseNI	ACTGG	4 cut(s)	140, 538, 1075, 1307
BseXI	GCAGC	3 cut(s)	239, 403, 813
BsgI	GTGCAG	1 cut(s)	1266
Bsh1236I	CGCG	2 cut(s)	297, 884
BshFI	GGCC	4 cut(s)	246, 520, 776, 1074
BsiHKAI	GWGCWC	1 cut(s)	1285
BsiSI	CCGG	3 cut(s)	249, 563, 662
BslI	CCNNNNNNNGG	5 cut(s)	347, 569, 783, 1131, 1234
BsmAI	GTCTC	1 cut(s)	1184
BsmI	GAATGC	2 cut(s)	598, 877
BsnI	GGCC	4 cut(s)	246, 520, 776, 1074
Bsp1286I	GDGCHC	2 cut(s)	342, 1285
Bsp143I	GATC	5 cut(s)	264, 398, 499, 711, 1162
Bsp19I	CCATGG	1 cut(s)	290
BspANI	GGCC	4 cut(s)	246, 520, 776, 1074
BspCNI	CTCAG	3 cut(s)	173, 594, 1297
BspFNI	CGCG	2 cut(s)	297, 884
BspLI	GGNNCC	4 cut(s)	236, 247, 339, 359
BspMI	ACCTGC	1 cut(s)	1238
BspPI	GGATC	3 cut(s)	406, 494, 1170
BsrI	ACTGG	4 cut(s)	140, 538, 1075, 1307
BssECI	CCNNGG	4 cut(s)	238, 247, 290, 333
BssMI	GATC	5 cut(s)	264, 398, 499, 711, 1162
BssT1I	CCWWGG	2 cut(s)	290, 333
Bst2UI	CCWGG	1 cut(s)	239
Bst4CI	ACNGT	1 cut(s)	958
Bst6I	CTCTTC	3 cut(s)	423, 581, 1007
BstC8I	GCNNGC	3 cut(s)	374, 846, 999
BstDEI	CTNAG	4 cut(s)	160, 602, 612, 1284
BstDSI	CCRYGG	1 cut(s)	290
BstEII	GGTNACC	1 cut(s)	131
BstF5I	GGATG	1 cut(s)	1009
BstFNI	CGCG	2 cut(s)	297, 884
BstHHI	GCGC	1 cut(s)	297
BstKTI	GATC	5 cut(s)	267, 401, 502, 714, 1165
BstMAI	GTCTC	1 cut(s)	1184
BstMBI	GATC	5 cut(s)	264, 398, 499, 711, 1162
BstMWI	GCNNNNNNNGC	7 cut(s)	249, 252, 322, 369, 692, 742, 881
BstNI	CCWGG	1 cut(s)	239
BstNSI	RCATGY	1 cut(s)	1001
BstPI	GGTNACC	1 cut(s)	131
BstSCI	CCNGG	3 cut(s)	237, 247, 660
BstSFI	CTRYAG	2 cut(s)	639, 1263
BstUI	CGCG	2 cut(s)	297, 884
BstV1I	GCAGC	3 cut(s)	239, 403, 813
BstV2I	GAAGAC	1 cut(s)	1305
BsuRI	GGCC	4 cut(s)	246, 520, 776, 1074
BtgI	CCRYGG	1 cut(s)	290
BtsCI	GGATG	1 cut(s)	1009
BveI	ACCTGC	1 cut(s)	1238
Cac8I	GCNNGC	3 cut(s)	374, 846, 999
CfoI	GCGC	1 cut(s)	297
Cfr13I	GGNCC	2 cut(s)	245, 287
Csp6I	GTAC	1 cut(s)	1024
CspCI	CAANNNNNGTGG	2 cut(s)	315, 350
CviAII	CATG	8 cut(s)	262, 291, 683, 752, 778, 998, 1027, 1126
CviQI	GTAC	1 cut(s)	1024
DdeI	CTNAG	4 cut(s)	160, 602, 612, 1284
DpnI	GATC	5 cut(s)	266, 400, 501, 713, 1164
DpnII	GATC	5 cut(s)	264, 398, 499, 711, 1162
Eam1104I	CTCTTC	3 cut(s)	423, 581, 1007
EarI	CTCTTC	3 cut(s)	423, 581, 1007
EciI	GGCGGA	1 cut(s)	1175
Ecl136II	GAGCTC	1 cut(s)	1283
Eco130I	CCWWGG	2 cut(s)	290, 333
Eco147I	AGGCCT	1 cut(s)	520
Eco24I	GRGCYC	2 cut(s)	342, 1285
Eco47I	GGWCC	1 cut(s)	287
Eco53kI	GAGCTC	1 cut(s)	1283
Eco91I	GGTNACC	1 cut(s)	131
EcoICRI	GAGCTC	1 cut(s)	1283
EcoO65I	GGTNACC	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	237
EcoT14I	CCWWGG	2 cut(s)	290, 333
EcoT38I	GRGCYC	2 cut(s)	342, 1285
ErhI	CCWWGG	2 cut(s)	290, 333
FaeI	CATG	8 cut(s)	265, 294, 686, 755, 781, 1001, 1030, 1129
FatI	CATG	8 cut(s)	261, 290, 682, 751, 777, 997, 1026, 1125
FbaI	TGATCA	1 cut(s)	711
FblI	GTMKAC	1 cut(s)	953
Fnu4HI	GCNGC	7 cut(s)	92, 244, 253, 417, 792, 827, 1158
FokI	GGATG	1 cut(s)	1016
FriOI	GRGCYC	2 cut(s)	342, 1285
Fsp4HI	GCNGC	7 cut(s)	92, 244, 253, 417, 792, 827, 1158
FspBI	CTAG	1 cut(s)	888
GlaI	GCGC	1 cut(s)	296
GluI	GCNGC	7 cut(s)	92, 244, 253, 417, 792, 827, 1158
GsuI	CTGGAG	2 cut(s)	221, 758
HaeIII	GGCC	4 cut(s)	246, 520, 776, 1074
HapII	CCGG	3 cut(s)	249, 563, 662
HhaI	GCGC	1 cut(s)	297
Hin1II	CATG	8 cut(s)	265, 294, 686, 755, 781, 1001, 1030, 1129
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HincII	GTYRAC	1 cut(s)	954
HindII	GTYRAC	1 cut(s)	954
HinfI	GANTC	4 cut(s)	5, 405, 608, 667
HpaII	CCGG	3 cut(s)	249, 563, 662
HphI	GGTGA	7 cut(s)	78, 195, 472, 676, 685, 743, 772
Hpy166II	GTNNAC	4 cut(s)	145, 301, 471, 954
Hpy188I	TCNGA	4 cut(s)	322, 398, 1167, 1209
Hpy188III	TCNNGA	3 cut(s)	383, 402, 1337
Hpy8I	GTNNAC	4 cut(s)	145, 301, 471, 954
HpyAV	CCTTC	3 cut(s)	721, 922, 1130
HpyCH4III	ACNGT	1 cut(s)	958
HpyCH4V	TGCA	5 cut(s)	476, 548, 829, 997, 1247
HpyF10VI	GCNNNNNNNGC	7 cut(s)	249, 252, 322, 369, 692, 742, 881
HpyF3I	CTNAG	4 cut(s)	160, 602, 612, 1284
Hsp92II	CATG	8 cut(s)	265, 294, 686, 755, 781, 1001, 1030, 1129
HspAI	GCGC	1 cut(s)	295
Ksp22I	TGATCA	1 cut(s)	711
Kzo9I	GATC	5 cut(s)	264, 398, 499, 711, 1162
LmnI	GCTCC	4 cut(s)	240, 260, 337, 742
Lsp1109I	GCAGC	3 cut(s)	239, 403, 813
MaeI	CTAG	1 cut(s)	888
MaeIII	GTNAC	2 cut(s)	131, 673
MalI	GATC	5 cut(s)	266, 400, 501, 713, 1164
MboI	GATC	5 cut(s)	264, 398, 499, 711, 1162
MboII	GAAGA	7 cut(s)	268, 440, 598, 937, 1024, 1057, 1310
MhlI	GDGCHC	2 cut(s)	342, 1285
MluCI	AATT	2 cut(s)	622, 781
MlyI	GAGTC	1 cut(s)	617
MseI	TTAA	2 cut(s)	510, 771
MslI	CAYNNNNRTG	1 cut(s)	1002
MspI	CCGG	3 cut(s)	249, 563, 662
MspR9I	CCNGG	3 cut(s)	239, 249, 662
Mva1269I	GAATGC	2 cut(s)	598, 877
MvaI	CCWGG	1 cut(s)	239
MvnI	CGCG	2 cut(s)	297, 884
MwoI	GCNNNNNNNGC	7 cut(s)	249, 252, 322, 369, 692, 742, 881
NciI	CCSGG	2 cut(s)	249, 662
NcoI	CCATGG	1 cut(s)	290
NdeII	GATC	5 cut(s)	264, 398, 499, 711, 1162
NlaIII	CATG	8 cut(s)	265, 294, 686, 755, 781, 1001, 1030, 1129
NlaIV	GGNNCC	4 cut(s)	236, 247, 339, 359
NmeAIII	GCCGAG	1 cut(s)	622
NmuCI	GTSAC	1 cut(s)	673
NspI	RCATGY	1 cut(s)	1001
PaeI	GCATGC	1 cut(s)	1001
PceI	AGGCCT	1 cut(s)	520
PctI	GAATGC	2 cut(s)	598, 877
PfeI	GAWTC	3 cut(s)	5, 405, 667
PflMI	CCANNNNNTGG	3 cut(s)	783, 1131, 1234
PkrI	GCNGC	7 cut(s)	93, 245, 254, 418, 793, 828, 1159
PleI	GAGTC	1 cut(s)	616
PpsI	GAGTC	1 cut(s)	616
Psp124BI	GAGCTC	1 cut(s)	1285
Psp6I	CCWGG	1 cut(s)	237
PspEI	GGTNACC	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	237
PspN4I	GGNNCC	4 cut(s)	236, 247, 339, 359
PspPI	GGNCC	2 cut(s)	245, 287
RsaI	GTAC	1 cut(s)	1025
RsaNI	GTAC	1 cut(s)	1024
RseI	CAYNNNNRTG	1 cut(s)	1002
SacI	GAGCTC	1 cut(s)	1285
SalI	GTCGAC	1 cut(s)	952
SaqAI	TTAA	2 cut(s)	510, 771
SatI	GCNGC	7 cut(s)	92, 244, 253, 417, 792, 827, 1158
Sau3AI	GATC	5 cut(s)	264, 398, 499, 711, 1162
Sau96I	GGNCC	2 cut(s)	245, 287
SchI	GAGTC	1 cut(s)	617
ScrFI	CCNGG	3 cut(s)	239, 249, 662
SduI	GDGCHC	2 cut(s)	342, 1285
SfcI	CTRYAG	2 cut(s)	639, 1263
SinI	GGWCC	1 cut(s)	287
SmiMI	CAYNNNNRTG	1 cut(s)	1002
SpeI	ACTAGT	1 cut(s)	887
SphI	GCATGC	1 cut(s)	1001
Sse9I	AATT	2 cut(s)	622, 781
SseBI	AGGCCT	1 cut(s)	520
SspMI	CTAG	1 cut(s)	888
SstI	GAGCTC	1 cut(s)	1285
StuI	AGGCCT	1 cut(s)	520
StyD4I	CCNGG	3 cut(s)	237, 247, 660
StyI	CCWWGG	2 cut(s)	290, 333
TaaI	ACNGT	1 cut(s)	958
TaqI	TCGA	5 cut(s)	279, 515, 805, 953, 963
TasI	AATT	2 cut(s)	622, 781
TatI	WGTACW	1 cut(s)	1023
TauI	GCSGC	4 cut(s)	94, 246, 794, 1160
TfiI	GAWTC	3 cut(s)	5, 405, 667
Tru1I	TTAA	2 cut(s)	510, 771
Tru9I	TTAA	2 cut(s)	510, 771
TseFI	GTSAC	1 cut(s)	673
TseI	GCWGC	3 cut(s)	252, 416, 826
Tsp45I	GTSAC	1 cut(s)	673
TspDTI	ATGAA	5 cut(s)	198, 732, 794, 1025, 1142
TspGWI	ACGGA	1 cut(s)	1121
Van91I	CCANNNNNTGG	3 cut(s)	783, 1131, 1234
VpaK11BI	GGWCC	1 cut(s)	287
XapI	RAATTY	1 cut(s)	622
XceI	RCATGY	1 cut(s)	1001
XcmI	CCANNNNNNNNNTGG	1 cut(s)	228
XmiI	GTMKAC	1 cut(s)	953
XspI	CTAG	1 cut(s)	888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.