Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008122.1

Orthogroup ID

OG0002772

Physical Location & Seq

Genomic Coordinates Reverse (-)

259 .. 1593

Gene Structure 1335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008122.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

atggagtctacaccccaaaacctgctgtgcttcttcttcttcttcctcctccaccgcaccacagcctcatcaccgccgcctcccttccccaaacaagccctccccacaaggtcaggctacctcccagtcaaccccacgacaaactctgccatatactacactttctatgaagctcaaaccccaatctcacctctctcacaaactccactcctcatttggctccagggcggccccggctgctcctccatgatcggcaacttcttcgagctcggtccctggcgcgtcaacttccacaagcacccctccgagccccttgccttggagcccaactctggttcttggaaccgcattttcggcttggtttttcttgacaatcctataggcaccggattcagcatcgctgcgaagcccgaagagataccaaccgatcagtttggagttgcaaagcacttgttcgctgcgatcaccaagtttgttgagcttgatccagcgtttaagtcgaggcgtatttacattactggggagagctatgcagggaagtatgttccggctattggttactacattttgaagaggaatgccgagttaagtgagtctaagcgtgtgaatttgggcggtgttgctatcggagatgggctaacagacccggtgattcaggtggctactcatgctgcgaatacatacttctctggtttgatcaatgagaggcagaagagtgagctggaggagcttcaagttgcggcggtgaggttgattaaggcgaggaattggcgtgaggcaacgaatggccgaaacagagttttgaggaggttgcaaaatatgacagggctggctactttgtatgactacacaaagaatgccgactacgaaaccagtttggttggggagttgttgagccataaggaggtgaagaaggcgttgggggtgtcgaatgtgtccattgtttttgaggagtgtagtgatttagtgggagatgtgttgcaagcggatgtgatgaagagtgtgaaatacatggttgagtttcttgtgaagaacagcaaggtgttgctgtatcaagggcagtatgatctgcgagacggtgtgttttccaccgaggcttgggtgaagaccatgaaatgggaagggatacagaagtttctgtcggcagatcggaatgtgtggaagttgggtggagagactgctggttatgttcagaaatgggggagtttgagccaagtagcggtttcaggtgctggtcatcttttgccaactgaccagccattgagagctcaagcaatgattgaagactgggtcttggataaagggctgtttgccaatgttcacgaggctatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

444

Amino Acids

49.43

Weight (kDa)

7.69

Isoelectric Point (pI)

38.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15000
fragaria_vesca	FvH4_2g21150 FvH4_2g21240 FvH4_4g32480
malus_domestica	MD13G1025000.v1.1 MD16G1027500.v1.1
prunus_persica	Prupe.1G325200_v2.0.a1
pyrus_communis	pycom16g02330
rosa_chinensis	RchiOBHm_Chr4g0441341 RchiOBHm_Chr6g0287751 RchiOBHm_Chr6g0287771 RchiOBHm_Chr6g0287801
rosa_laevigata	RLG00000006100 RLG00000012469
rosa_multiflora	Rmu_sc0003335.1_g000006 Rmu_sc0003335.1_g000008 Rmu_sc0003877.1_g000008 Rmu_sc0003877.1_g000010 Rmu_sc0008122.1_g000001 Rmu_sc0012909.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382230 Rroxscaffold_7G00181130 Rroxscaffold_7G00181230
rosa_rugosa	Rorug04G0332500 Rorug06G0191600
rosa_samantha	Rh4AG384500 Rh4BG398600 Rh4CG413700 Rh4DG391200 Rh6AG301600 Rh6BG307400 Rh6BG307500 Rh6CG315400 Rh6DG299300 Rh6DG299500 Rh6DG299800 Rh6DG300100
rosa_wichuraiana	Rw4G033190 Rw6G026050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	30
AccB1I	GGYRCC	1 cut(s)	383
AccB7I	CCANNNNNTGG	1 cut(s)	1116
AccI	GTMKAC	1 cut(s)	8
AccII	CGCG	1 cut(s)	282
AclWI	GGATC	1 cut(s)	479
AcoI	YGGCCR	1 cut(s)	787
AcsI	RAATTY	1 cut(s)	607
AfiI	CCNNNNNNNGG	7 cut(s)	319, 332, 554, 904, 1098, 1116, 1219
AgsI	TTSAA	3 cut(s)	571, 734, 1283
AjnI	CCWGG	2 cut(s)	222, 275
AjuI	GAANNNNNNNTTGG	2 cut(s)	902, 934
AluBI	AGCT	7 cut(s)	173, 268, 481, 528, 721, 730, 1268
AluI	AGCT	7 cut(s)	173, 268, 481, 528, 721, 730, 1268
Alw21I	GWGCWC	2 cut(s)	270, 1270
Alw26I	GTCTC	2 cut(s)	1068, 1169
AlwI	GGATC	1 cut(s)	479
AlwNI	CAGNNNCTG	1 cut(s)	1232
AoxI	GGCC	2 cut(s)	229, 787
ApeKI	GCWGC	4 cut(s)	237, 401, 458, 671
ApoI	RAATTY	1 cut(s)	607
AspLEI	GCGC	1 cut(s)	282
AspS9I	GGNCC	2 cut(s)	230, 272
AsuC2I	CCSGG	2 cut(s)	234, 647
AsuHPI	GGTGA	7 cut(s)	63, 180, 457, 661, 757, 919, 1114
AvaII	GGWCC	1 cut(s)	272
BaeI	ACNNNNGTAYC	2 cut(s)	1118, 1151
BanI	GGYRCC	1 cut(s)	383
BanII	GRGCYC	4 cut(s)	270, 312, 327, 1270
BauI	CACGAG	1 cut(s)	1322
BbsI	GAAGAC	2 cut(s)	1112, 1290
Bbv12I	GWGCWC	2 cut(s)	270, 1270
BbvI	GCAGC	4 cut(s)	224, 388, 445, 658
BccI	CCATC	1 cut(s)	626
BcgI	CGANNNNNNTGC	4 cut(s)	244, 278, 296, 330
BciT130I	CCWGG	2 cut(s)	224, 277
BciVI	GTATCC	1 cut(s)	1119
BclI	TGATCA	1 cut(s)	696
BcnI	CCSGG	2 cut(s)	234, 647
BcoDI	GTCTC	2 cut(s)	1068, 1169
BfmI	CTRYAG	1 cut(s)	378
BfuAI	ACCTGC	1 cut(s)	30
BfuI	GTATCC	1 cut(s)	1119
BisI	GCNGC	7 cut(s)	77, 229, 238, 402, 459, 672, 741
BlsI	GCNGC	7 cut(s)	78, 230, 239, 403, 460, 673, 742
Bme1390I	CCNGG	4 cut(s)	224, 234, 277, 647
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	2 cut(s)	230, 272
BmiI	GGNNCC	6 cut(s)	221, 232, 274, 324, 344, 385
BmrFI	CCNGG	4 cut(s)	224, 234, 277, 647
BmrI	ACTGGG	3 cut(s)	119, 528, 1297
BmsI	GCATC	1 cut(s)	405
BmuI	ACTGGG	3 cut(s)	119, 528, 1297
BpiI	GAAGAC	2 cut(s)	1112, 1290
BplI	GAGNNNNNCTC	2 cut(s)	314, 346
BpmI	CTGGAG	2 cut(s)	206, 743
BpuEI	CTTGAG	1 cut(s)	1254
BpuMI	CCSGG	2 cut(s)	234, 647
BsaJI	CCNNGG	5 cut(s)	223, 232, 275, 318, 1092
BsaWI	WCCGGW	1 cut(s)	386
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	7 cut(s)	319, 332, 554, 904, 1098, 1116, 1219
Bse1I	ACTGG	4 cut(s)	125, 523, 873, 1292
Bse3DI	GCAATG	1 cut(s)	1281
BseBI	CCWGG	2 cut(s)	224, 277
BseDI	CCNNGG	5 cut(s)	223, 232, 275, 318, 1092
BseGI	GGATG	1 cut(s)	994
BseLI	CCNNNNNNNGG	7 cut(s)	319, 332, 554, 904, 1098, 1116, 1219
BseMI	GCAATG	1 cut(s)	1281
BseNI	ACTGG	4 cut(s)	125, 523, 873, 1292
BseRI	GAGGAG	6 cut(s)	38, 200, 232, 740, 820, 965
BseXI	GCAGC	4 cut(s)	224, 388, 445, 658
Bsh1236I	CGCG	1 cut(s)	282
BshFI	GGCC	2 cut(s)	231, 789
BshNI	GGYRCC	1 cut(s)	383
BsiHKAI	GWGCWC	2 cut(s)	270, 1270
BsiSI	CCGG	4 cut(s)	234, 387, 548, 647
BslFI	GGGAC	1 cut(s)	258
BslI	CCNNNNNNNGG	7 cut(s)	319, 332, 554, 904, 1098, 1116, 1219
BsmAI	GTCTC	2 cut(s)	1068, 1169
BsmBI	CGTCTC	1 cut(s)	1068
BsmFI	GGGAC	1 cut(s)	258
BsmI	GAATGC	2 cut(s)	583, 862
BsnI	GGCC	2 cut(s)	231, 789
Bsp1286I	GDGCHC	4 cut(s)	270, 312, 327, 1270
Bsp143I	GATC	7 cut(s)	249, 427, 462, 484, 696, 1066, 1147
BspANI	GGCC	2 cut(s)	231, 789
BspFNI	CGCG	1 cut(s)	282
BspLI	GGNNCC	6 cut(s)	221, 232, 274, 324, 344, 385
BspMI	ACCTGC	1 cut(s)	30
BspPI	GGATC	1 cut(s)	479
BspT107I	GGYRCC	1 cut(s)	383
BsrDI	GCAATG	1 cut(s)	1281
BsrI	ACTGG	4 cut(s)	125, 523, 873, 1292
BssECI	CCNNGG	5 cut(s)	223, 232, 275, 318, 1092
BssMI	GATC	7 cut(s)	249, 427, 462, 484, 696, 1066, 1147
BssSI	CACGAG	1 cut(s)	1322
BssT1I	CCWWGG	1 cut(s)	318
Bst2BI	CACGAG	1 cut(s)	1322
Bst2UI	CCWGG	2 cut(s)	224, 277
Bst4CI	ACNGT	1 cut(s)	1079
Bst6I	CTCTTC	4 cut(s)	408, 566, 707, 992
BstC8I	GCNNGC	2 cut(s)	831, 984
BstDEI	CTNAG	1 cut(s)	597
BstF5I	GGATG	1 cut(s)	994
BstFNI	CGCG	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	282
BstKTI	GATC	7 cut(s)	252, 430, 465, 487, 699, 1069, 1150
BstMAI	GTCTC	2 cut(s)	1068, 1169
BstMBI	GATC	7 cut(s)	249, 427, 462, 484, 696, 1066, 1147
BstMWI	GCNNNNNNNGC	5 cut(s)	234, 237, 354, 668, 727
BstNI	CCWGG	2 cut(s)	224, 277
BstSCI	CCNGG	4 cut(s)	222, 232, 275, 645
BstSFI	CTRYAG	1 cut(s)	378
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	4 cut(s)	224, 388, 445, 658
BstV2I	GAAGAC	2 cut(s)	1112, 1290
BsuI	GTATCC	1 cut(s)	1119
BsuRI	GGCC	2 cut(s)	231, 789
BtgZI	GCGATG	1 cut(s)	382
BtsCI	GGATG	1 cut(s)	994
BveI	ACCTGC	1 cut(s)	30
Cac8I	GCNNGC	2 cut(s)	831, 984
CaiI	CAGNNNCTG	1 cut(s)	1232
CfoI	GCGC	1 cut(s)	282
Cfr13I	GGNCC	2 cut(s)	230, 272
CseI	GACGC	1 cut(s)	271
CviAII	CATG	4 cut(s)	247, 668, 1012, 1111
DdeI	CTNAG	1 cut(s)	597
DpnI	GATC	7 cut(s)	251, 429, 464, 486, 698, 1068, 1149
DpnII	GATC	7 cut(s)	249, 427, 462, 484, 696, 1066, 1147
EaeI	YGGCCR	1 cut(s)	787
Eam1104I	CTCTTC	4 cut(s)	408, 566, 707, 992
EarI	CTCTTC	4 cut(s)	408, 566, 707, 992
Ecl136II	GAGCTC	2 cut(s)	268, 1268
Eco130I	CCWWGG	1 cut(s)	318
Eco24I	GRGCYC	4 cut(s)	270, 312, 327, 1270
Eco47I	GGWCC	1 cut(s)	272
Eco53kI	GAGCTC	2 cut(s)	268, 1268
EcoICRI	GAGCTC	2 cut(s)	268, 1268
EcoRII	CCWGG	2 cut(s)	222, 275
EcoT14I	CCWWGG	1 cut(s)	318
EcoT38I	GRGCYC	4 cut(s)	270, 312, 327, 1270
ErhI	CCWWGG	1 cut(s)	318
Esp3I	CGTCTC	1 cut(s)	1068
FaeI	CATG	4 cut(s)	250, 671, 1015, 1114
FaqI	GGGAC	1 cut(s)	258
FatI	CATG	4 cut(s)	246, 667, 1011, 1110
FbaI	TGATCA	1 cut(s)	696
FblI	GTMKAC	1 cut(s)	8
Fnu4HI	GCNGC	7 cut(s)	77, 229, 238, 402, 459, 672, 741
FokI	GGATG	1 cut(s)	1001
FriOI	GRGCYC	4 cut(s)	270, 312, 327, 1270
Fsp4HI	GCNGC	7 cut(s)	77, 229, 238, 402, 459, 672, 741
GlaI	GCGC	1 cut(s)	281
GluI	GCNGC	7 cut(s)	77, 229, 238, 402, 459, 672, 741
GsuI	CTGGAG	2 cut(s)	206, 743
HaeIII	GGCC	2 cut(s)	231, 789
HapII	CCGG	4 cut(s)	234, 387, 548, 647
HgaI	GACGC	1 cut(s)	271
HhaI	GCGC	1 cut(s)	282
Hin1II	CATG	4 cut(s)	250, 671, 1015, 1114
Hin6I	GCGC	1 cut(s)	280
HinP1I	GCGC	1 cut(s)	280
HincII	GTYRAC	2 cut(s)	130, 286
HindII	GTYRAC	2 cut(s)	130, 286
HinfI	GANTC	4 cut(s)	5, 390, 593, 652
HpaII	CCGG	4 cut(s)	234, 387, 548, 647
HphI	GGTGA	7 cut(s)	63, 180, 457, 661, 757, 919, 1114
Hpy166II	GTNNAC	4 cut(s)	9, 130, 286, 1321
Hpy188I	TCNGA	4 cut(s)	307, 629, 1152, 1194
Hpy188III	TCNNGA	2 cut(s)	368, 1322
Hpy8I	GTNNAC	4 cut(s)	9, 130, 286, 1321
HpyAV	CCTTC	3 cut(s)	94, 907, 1115
HpyCH4III	ACNGT	1 cut(s)	1079
HpyCH4V	TGCA	4 cut(s)	443, 533, 814, 982
HpyF10VI	GCNNNNNNNGC	5 cut(s)	234, 237, 354, 668, 727
HpyF3I	CTNAG	1 cut(s)	597
Hsp92II	CATG	4 cut(s)	250, 671, 1015, 1114
HspAI	GCGC	1 cut(s)	280
Ksp22I	TGATCA	1 cut(s)	696
Kzo9I	GATC	7 cut(s)	249, 427, 462, 484, 696, 1066, 1147
LmnI	GCTCC	4 cut(s)	225, 245, 322, 727
Lsp1109I	GCAGC	4 cut(s)	224, 388, 445, 658
LweI	GCATC	1 cut(s)	405
MaeIII	GTNAC	1 cut(s)	557
MalI	GATC	7 cut(s)	251, 429, 464, 486, 698, 1068, 1149
MboI	GATC	7 cut(s)	249, 427, 462, 484, 696, 1066, 1147
MhlI	GDGCHC	4 cut(s)	270, 312, 327, 1270
MluCI	AATT	2 cut(s)	607, 766
MlyI	GAGTC	2 cut(s)	14, 602
MseI	TTAA	3 cut(s)	495, 587, 756
MspI	CCGG	4 cut(s)	234, 387, 548, 647
MspR9I	CCNGG	4 cut(s)	224, 234, 277, 647
Mva1269I	GAATGC	2 cut(s)	583, 862
MvaI	CCWGG	2 cut(s)	224, 277
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	5 cut(s)	234, 237, 354, 668, 727
NciI	CCSGG	2 cut(s)	234, 647
NdeII	GATC	7 cut(s)	249, 427, 462, 484, 696, 1066, 1147
NlaIII	CATG	4 cut(s)	250, 671, 1015, 1114
NlaIV	GGNNCC	6 cut(s)	221, 232, 274, 324, 344, 385
NmeAIII	GCCGAG	1 cut(s)	607
PctI	GAATGC	2 cut(s)	583, 862
PfeI	GAWTC	2 cut(s)	390, 652
PflFI	GACNNNGTC	1 cut(s)	1289
PflMI	CCANNNNNTGG	1 cut(s)	1116
PkrI	GCNGC	7 cut(s)	78, 230, 239, 403, 460, 673, 742
PleI	GAGTC	2 cut(s)	13, 601
PpsI	GAGTC	2 cut(s)	13, 601
Psp124BI	GAGCTC	2 cut(s)	270, 1270
Psp6I	CCWGG	2 cut(s)	222, 275
PspGI	CCWGG	2 cut(s)	222, 275
PspN4I	GGNNCC	6 cut(s)	221, 232, 274, 324, 344, 385
PspPI	GGNCC	2 cut(s)	230, 272
PstNI	CAGNNNCTG	1 cut(s)	1232
PsyI	GACNNNGTC	1 cut(s)	1289
SacI	GAGCTC	2 cut(s)	270, 1270
SaqAI	TTAA	3 cut(s)	495, 587, 756
SatI	GCNGC	7 cut(s)	77, 229, 238, 402, 459, 672, 741
Sau3AI	GATC	7 cut(s)	249, 427, 462, 484, 696, 1066, 1147
Sau96I	GGNCC	2 cut(s)	230, 272
SchI	GAGTC	2 cut(s)	14, 602
ScrFI	CCNGG	4 cut(s)	224, 234, 277, 647
SduI	GDGCHC	4 cut(s)	270, 312, 327, 1270
SfaNI	GCATC	1 cut(s)	405
SfcI	CTRYAG	1 cut(s)	378
SinI	GGWCC	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	1269
SmoI	CTYRAG	1 cut(s)	1269
Sse9I	AATT	2 cut(s)	607, 766
SstI	GAGCTC	2 cut(s)	270, 1270
StyD4I	CCNGG	4 cut(s)	222, 232, 275, 645
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	1 cut(s)	1079
TaqI	TCGA	3 cut(s)	264, 500, 929
TaqII	GACCGA	1 cut(s)	260
TasI	AATT	2 cut(s)	607, 766
TauI	GCSGC	3 cut(s)	79, 231, 743
TfiI	GAWTC	2 cut(s)	390, 652
Tru1I	TTAA	3 cut(s)	495, 587, 756
Tru9I	TTAA	3 cut(s)	495, 587, 756
TseI	GCWGC	4 cut(s)	237, 401, 458, 671
TspDTI	ATGAA	3 cut(s)	183, 1010, 1127
Tth111I	GACNNNGTC	1 cut(s)	1289
Van91I	CCANNNNNTGG	1 cut(s)	1116
VpaK11BI	GGWCC	1 cut(s)	272
XapI	RAATTY	1 cut(s)	607
XcmI	CCANNNNNNNNNTGG	1 cut(s)	213
XmiI	GTMKAC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.