Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002772

Physical Location & Seq

Genomic Coordinates Forward (+)

4352730 .. 4354287

Gene Structure 1558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006100

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

ATGATCAGACTCATGTCACCACTTTCAACAAGTAAGCACAGTTACTTTATAATCTTATCGTCACACTCCAACAAAGACAATTCAACATTGTACGCTCCGAAGTCTACAATGGAGTCTACACCCCAAAACGTCCTCTGCTTCTTCTTCTTCCTCTTCCTCCTCTACCGCACCACAGCCTCATCACCGCCGCCTCTCTTCCCCAAACAAGCCCTCCCAACAAAGTCAGGCTACCTCCCAGTCAACCCCACCACAAACTCTGCCATATACTACACTTTCTATGAGGCTCAAACCCCAATCTCACCTCTCTCACAAACTCCACTCCTCATTTGGCTCCAGGGCGGCCCCGGCTGCTCCTCCATGATCGGCAACTTCTTCGAGCTCGGTCCCTGGCGCGTCAACTTCCACAAGCACCCCTCCGAGCCCCTTGCCTTGGAGCCCAACTCTGGTTCTTGGAACCGCATTTTCGGCTTGGTTTTTCTTGACAATCCTATAGGCACCGGATTCAGCATCGCTGCGAAGCCCGAAGAGATACCAACTGATCAGTTTGGAGTTGCAAAGCACTTGTTCGCTGCGATCACCAAGTTTGTTGAGCTTGATCCAGCTTTTAAGTCGAGGCGTATTTACATTACTGGGGAGAGCTATGCAGGGAAGTATGTTCCGGCTATTGGTTACTACATTTTGAAGAGGAATGCCGAGTTAAGTGAGTCTAAGCGTGTGAATTTGGGCGGTGTTGCTATCGGAGATGGGCTAACAGACCCGGTGATTCAGGTGGCTACTCATGCTGCGAATACTTACTTCTCTGGTTTGATCAATGAGAGGCAGAAGAGTGAGCTGGAGGCGCTTCAAGTTGCGGCGGTGAGGTTGATTAAGGCGAGGAATTGGAGTGAGGCAACGAATGGCCGAAACAGAGTTTTGAGGAGGTTGCAAAATATGACAGGGCTGGCTACTTTGTATGACTACACAAAGAATGCCGACTACGAAACCAGTTTGGTTGGGGAGTTGTTGAGCCATAAGGAGGTGAAGAAGGCGTTGGGGGTGTCGAATGTGTCCATTGTTTTTGAGGAGTGTAGTGATTTAGTGGGAGATGTGTTGCACGATGATGTGATGAAGAGTGTGAAATACATGGTGGAGTTTCTTGTGAAGAACAGCAAGGTGTTGCTGTATCAAGGGCAGTATGATCTGCGAGACGGTGTGTTTTCCACCGAGGCTTGGGTGAAGACCATGAAATGGGAAGGGATACAGAAGTTTCTGTTGGCAGATCGGAATGTGTGGAAGTTGGGTGGAGAAACTGCTGGTTATGTTCAGAAATGGGGGAGTTTGAGCCAAGTTGCGGTTTCAGGTGCTGGTCATCTTTTGCCAACTGACCAGCCATTGAGAGCTCAAGCAATGATTGAAGACTGGGTTTTGGATAAAGGGTTGTTTGCCAATGTTCAAGAGGCTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

482

Amino Acids

53.52

Weight (kDa)

8.46

Isoelectric Point (pI)

37.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	70 - 468	1.6e-97	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15000
fragaria_vesca	FvH4_2g21150 FvH4_2g21240 FvH4_4g32480
malus_domestica	MD13G1025000.v1.1 MD16G1027500.v1.1
prunus_persica	Prupe.1G325200_v2.0.a1
pyrus_communis	pycom16g02330
rosa_chinensis	RchiOBHm_Chr4g0441341 RchiOBHm_Chr6g0287751 RchiOBHm_Chr6g0287771 RchiOBHm_Chr6g0287801
rosa_laevigata	RLG00000006100 RLG00000012469
rosa_multiflora	Rmu_sc0003335.1_g000006 Rmu_sc0003335.1_g000008 Rmu_sc0003877.1_g000008 Rmu_sc0003877.1_g000010 Rmu_sc0008122.1_g000001 Rmu_sc0012909.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382230 Rroxscaffold_7G00181130 Rroxscaffold_7G00181230
rosa_rugosa	Rorug04G0332500 Rorug06G0191600
rosa_samantha	Rh4AG384500 Rh4BG398600 Rh4CG413700 Rh4DG391200 Rh6AG301600 Rh6BG307400 Rh6BG307500 Rh6CG315400 Rh6DG299300 Rh6DG299500 Rh6DG299800 Rh6DG300100
rosa_wichuraiana	Rw4G033190 Rw6G026050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	50
AccB1I	GGYRCC	1 cut(s)	494
AccB7I	CCANNNNNTGG	1 cut(s)	1227
AccI	GTMKAC	2 cut(s)	104, 116
AccII	CGCG	1 cut(s)	393
AciI	CCGC	9 cut(s)	166, 185, 188, 339, 457, 726, 851, 854, 1331
AclWI	GGATC	1 cut(s)	590
AcoI	YGGCCR	1 cut(s)	898
AcsI	RAATTY	1 cut(s)	718
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	7 cut(s)	430, 443, 665, 1015, 1209, 1227, 1330
AgsI	TTSAA	6 cut(s)	27, 84, 682, 845, 1394, 1433
AjnI	CCWGG	2 cut(s)	333, 386
AjuI	GAANNNNNNNTTGG	4 cut(s)	1013, 1045, 1235, 1267
AluBI	AGCT	6 cut(s)	379, 592, 602, 639, 832, 1379
AluI	AGCT	6 cut(s)	379, 592, 602, 639, 832, 1379
Alw21I	GWGCWC	2 cut(s)	381, 1381
Alw26I	GTCTC	1 cut(s)	1179
AlwI	GGATC	1 cut(s)	590
AlwNI	CAGNNNCTG	1 cut(s)	1343
AoxI	GGCC	2 cut(s)	340, 898
ApeKI	GCWGC	4 cut(s)	348, 512, 569, 782
ApoI	RAATTY	1 cut(s)	718
AspLEI	GCGC	2 cut(s)	393, 841
AspS9I	GGNCC	2 cut(s)	341, 383
AsuC2I	CCSGG	2 cut(s)	345, 758
AsuHPI	GGTGA	8 cut(s)	9, 174, 291, 568, 772, 868, 1030, 1225
AvaII	GGWCC	1 cut(s)	383
BaeI	ACNNNNGTAYC	2 cut(s)	1229, 1262
BanI	GGYRCC	1 cut(s)	494
BanII	GRGCYC	4 cut(s)	381, 423, 438, 1381
BbsI	GAAGAC	2 cut(s)	1223, 1401
Bbv12I	GWGCWC	2 cut(s)	381, 1381
BbvI	GCAGC	4 cut(s)	335, 499, 556, 769
BccI	CCATC	1 cut(s)	737
BcgI	CGANNNNNNTGC	4 cut(s)	355, 389, 407, 441
BciT130I	CCWGG	2 cut(s)	335, 388
BciVI	GTATCC	1 cut(s)	1230
BclI	TGATCA	3 cut(s)	3, 538, 807
BcnI	CCSGG	2 cut(s)	345, 758
BcoDI	GTCTC	1 cut(s)	1179
BfmI	CTRYAG	1 cut(s)	489
BfoI	RGCGCY	1 cut(s)	842
BfuI	GTATCC	1 cut(s)	1230
BisI	GCNGC	7 cut(s)	188, 340, 349, 513, 570, 783, 852
BlsI	GCNGC	7 cut(s)	189, 341, 350, 514, 571, 784, 853
Bme1390I	CCNGG	4 cut(s)	335, 345, 388, 758
Bme18I	GGWCC	1 cut(s)	383
BmgT120I	GGNCC	2 cut(s)	341, 383
BmiI	GGNNCC	6 cut(s)	332, 343, 385, 435, 455, 496
BmrFI	CCNGG	4 cut(s)	335, 345, 388, 758
BmrI	ACTGGG	3 cut(s)	230, 639, 1408
BmsI	GCATC	1 cut(s)	516
BmuI	ACTGGG	3 cut(s)	230, 639, 1408
BoxI	GACNNNNGTC	1 cut(s)	13
BpiI	GAAGAC	2 cut(s)	1223, 1401
BplI	GAGNNNNNCTC	2 cut(s)	425, 457
BpmI	CTGGAG	2 cut(s)	317, 854
BpuEI	CTTGAG	1 cut(s)	1365
BpuMI	CCSGG	2 cut(s)	345, 758
BsaJI	CCNNGG	5 cut(s)	334, 343, 386, 429, 1203
BsaWI	WCCGGW	1 cut(s)	497
BsaXI	ACNNNNNCTCC	2 cut(s)	195, 225
Bsc4I	CCNNNNNNNGG	7 cut(s)	430, 443, 665, 1015, 1209, 1227, 1330
Bse1I	ACTGG	4 cut(s)	236, 634, 984, 1403
Bse3DI	GCAATG	1 cut(s)	1392
BseBI	CCWGG	2 cut(s)	335, 388
BseDI	CCNNGG	5 cut(s)	334, 343, 386, 429, 1203
BseLI	CCNNNNNNNGG	7 cut(s)	430, 443, 665, 1015, 1209, 1227, 1330
BseMI	GCAATG	1 cut(s)	1392
BseNI	ACTGG	4 cut(s)	236, 634, 984, 1403
BseRI	GAGGAG	5 cut(s)	149, 311, 343, 931, 1076
BseXI	GCAGC	4 cut(s)	335, 499, 556, 769
Bsh1236I	CGCG	1 cut(s)	393
BshFI	GGCC	2 cut(s)	342, 900
BshNI	GGYRCC	1 cut(s)	494
BsiHKAI	GWGCWC	2 cut(s)	381, 1381
BsiSI	CCGG	4 cut(s)	345, 498, 659, 758
BslFI	GGGAC	1 cut(s)	369
BslI	CCNNNNNNNGG	7 cut(s)	430, 443, 665, 1015, 1209, 1227, 1330
BsmAI	GTCTC	1 cut(s)	1179
BsmBI	CGTCTC	1 cut(s)	1179
BsmFI	GGGAC	1 cut(s)	369
BsmI	GAATGC	2 cut(s)	694, 973
BsnI	GGCC	2 cut(s)	342, 900
Bsp1286I	GDGCHC	4 cut(s)	381, 423, 438, 1381
Bsp143I	GATC	8 cut(s)	3, 360, 538, 573, 595, 807, 1177, 1258
BspACI	CCGC	9 cut(s)	166, 185, 188, 339, 457, 726, 851, 854, 1331
BspANI	GGCC	2 cut(s)	342, 900
BspFNI	CGCG	1 cut(s)	393
BspLI	GGNNCC	6 cut(s)	332, 343, 385, 435, 455, 496
BspPI	GGATC	1 cut(s)	590
BspT107I	GGYRCC	1 cut(s)	494
BsrDI	GCAATG	1 cut(s)	1392
BsrI	ACTGG	4 cut(s)	236, 634, 984, 1403
BssECI	CCNNGG	5 cut(s)	334, 343, 386, 429, 1203
BssMI	GATC	8 cut(s)	3, 360, 538, 573, 595, 807, 1177, 1258
BssT1I	CCWWGG	1 cut(s)	429
Bst2UI	CCWGG	2 cut(s)	335, 388
Bst4CI	ACNGT	2 cut(s)	41, 1190
Bst6I	CTCTTC	6 cut(s)	158, 200, 519, 677, 818, 1103
BstC8I	GCNNGC	1 cut(s)	942
BstDEI	CTNAG	1 cut(s)	708
BstFNI	CGCG	1 cut(s)	393
BstH2I	RGCGCY	1 cut(s)	842
BstHHI	GCGC	2 cut(s)	393, 841
BstKTI	GATC	8 cut(s)	6, 363, 541, 576, 598, 810, 1180, 1261
BstMAI	GTCTC	1 cut(s)	1179
BstMBI	GATC	8 cut(s)	3, 360, 538, 573, 595, 807, 1177, 1258
BstMWI	GCNNNNNNNGC	5 cut(s)	345, 348, 465, 779, 838
BstNI	CCWGG	2 cut(s)	335, 388
BstPAI	GACNNNNGTC	1 cut(s)	13
BstSCI	CCNGG	4 cut(s)	333, 343, 386, 756
BstSFI	CTRYAG	1 cut(s)	489
BstUI	CGCG	1 cut(s)	393
BstV1I	GCAGC	4 cut(s)	335, 499, 556, 769
BstV2I	GAAGAC	2 cut(s)	1223, 1401
BsuI	GTATCC	1 cut(s)	1230
BsuRI	GGCC	2 cut(s)	342, 900
BtgZI	GCGATG	1 cut(s)	493
Cac8I	GCNNGC	1 cut(s)	942
CaiI	CAGNNNCTG	1 cut(s)	1343
CfoI	GCGC	2 cut(s)	393, 841
Cfr13I	GGNCC	2 cut(s)	341, 383
CseI	GACGC	1 cut(s)	382
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	5 cut(s)	13, 358, 779, 1123, 1222
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	1 cut(s)	708
DpnI	GATC	8 cut(s)	5, 362, 540, 575, 597, 809, 1179, 1260
DpnII	GATC	8 cut(s)	3, 360, 538, 573, 595, 807, 1177, 1258
EaeI	YGGCCR	1 cut(s)	898
Eam1104I	CTCTTC	6 cut(s)	158, 200, 519, 677, 818, 1103
EarI	CTCTTC	6 cut(s)	158, 200, 519, 677, 818, 1103
Ecl136II	GAGCTC	2 cut(s)	379, 1379
Eco130I	CCWWGG	1 cut(s)	429
Eco24I	GRGCYC	4 cut(s)	381, 423, 438, 1381
Eco47I	GGWCC	1 cut(s)	383
Eco53kI	GAGCTC	2 cut(s)	379, 1379
EcoICRI	GAGCTC	2 cut(s)	379, 1379
EcoRII	CCWGG	2 cut(s)	333, 386
EcoT14I	CCWWGG	1 cut(s)	429
EcoT38I	GRGCYC	4 cut(s)	381, 423, 438, 1381
ErhI	CCWWGG	1 cut(s)	429
Esp3I	CGTCTC	1 cut(s)	1179
FaeI	CATG	5 cut(s)	16, 361, 782, 1126, 1225
FaqI	GGGAC	1 cut(s)	369
FatI	CATG	5 cut(s)	12, 357, 778, 1122, 1221
FbaI	TGATCA	3 cut(s)	3, 538, 807
FblI	GTMKAC	2 cut(s)	104, 116
Fnu4HI	GCNGC	7 cut(s)	188, 340, 349, 513, 570, 783, 852
FriOI	GRGCYC	4 cut(s)	381, 423, 438, 1381
Fsp4HI	GCNGC	7 cut(s)	188, 340, 349, 513, 570, 783, 852
GlaI	GCGC	2 cut(s)	392, 840
GluI	GCNGC	7 cut(s)	188, 340, 349, 513, 570, 783, 852
GsuI	CTGGAG	2 cut(s)	317, 854
HaeII	RGCGCY	1 cut(s)	842
HaeIII	GGCC	2 cut(s)	342, 900
HapII	CCGG	4 cut(s)	345, 498, 659, 758
HgaI	GACGC	1 cut(s)	382
HhaI	GCGC	2 cut(s)	393, 841
Hin1II	CATG	5 cut(s)	16, 361, 782, 1126, 1225
Hin6I	GCGC	2 cut(s)	391, 839
HinP1I	GCGC	2 cut(s)	391, 839
HincII	GTYRAC	2 cut(s)	241, 397
HindII	GTYRAC	2 cut(s)	241, 397
HinfI	GANTC	5 cut(s)	9, 113, 501, 704, 763
HpaII	CCGG	4 cut(s)	345, 498, 659, 758
HphI	GGTGA	8 cut(s)	9, 174, 291, 568, 772, 868, 1030, 1225
Hpy166II	GTNNAC	4 cut(s)	105, 117, 241, 397
Hpy188I	TCNGA	6 cut(s)	8, 99, 418, 740, 1263, 1305
Hpy188III	TCNNGA	2 cut(s)	479, 1433
Hpy8I	GTNNAC	4 cut(s)	105, 117, 241, 397
HpyAV	CCTTC	2 cut(s)	1018, 1226
HpyCH4III	ACNGT	2 cut(s)	41, 1190
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	4 cut(s)	554, 644, 925, 1093
HpyF10VI	GCNNNNNNNGC	5 cut(s)	345, 348, 465, 779, 838
HpyF3I	CTNAG	1 cut(s)	708
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	5 cut(s)	16, 361, 782, 1126, 1225
HspAI	GCGC	2 cut(s)	391, 839
Ksp22I	TGATCA	3 cut(s)	3, 538, 807
Kzo9I	GATC	8 cut(s)	3, 360, 538, 573, 595, 807, 1177, 1258
LmnI	GCTCC	4 cut(s)	100, 336, 356, 433
Lsp1109I	GCAGC	4 cut(s)	335, 499, 556, 769
LweI	GCATC	1 cut(s)	516
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	4 cut(s)	15, 41, 60, 668
MalI	GATC	8 cut(s)	5, 362, 540, 575, 597, 809, 1179, 1260
MboI	GATC	8 cut(s)	3, 360, 538, 573, 595, 807, 1177, 1258
MhlI	GDGCHC	4 cut(s)	381, 423, 438, 1381
MluCI	AATT	3 cut(s)	79, 718, 877
MlyI	GAGTC	3 cut(s)	3, 122, 713
MmeI	TCCRAC	1 cut(s)	93
MseI	TTAA	3 cut(s)	606, 698, 867
MslI	CAYNNNNRTG	1 cut(s)	1098
MspI	CCGG	4 cut(s)	345, 498, 659, 758
MspR9I	CCNGG	4 cut(s)	335, 345, 388, 758
Mva1269I	GAATGC	2 cut(s)	694, 973
MvaI	CCWGG	2 cut(s)	335, 388
MvnI	CGCG	1 cut(s)	393
MwoI	GCNNNNNNNGC	5 cut(s)	345, 348, 465, 779, 838
NciI	CCSGG	2 cut(s)	345, 758
NdeII	GATC	8 cut(s)	3, 360, 538, 573, 595, 807, 1177, 1258
NlaIII	CATG	5 cut(s)	16, 361, 782, 1126, 1225
NlaIV	GGNNCC	6 cut(s)	332, 343, 385, 435, 455, 496
NmeAIII	GCCGAG	1 cut(s)	718
NmuCI	GTSAC	2 cut(s)	15, 60
PctI	GAATGC	2 cut(s)	694, 973
PfeI	GAWTC	2 cut(s)	501, 763
PflMI	CCANNNNNTGG	1 cut(s)	1227
PkrI	GCNGC	7 cut(s)	189, 341, 350, 514, 571, 784, 853
PleI	GAGTC	3 cut(s)	3, 121, 712
PpsI	GAGTC	3 cut(s)	3, 121, 712
PshAI	GACNNNNGTC	1 cut(s)	13
PsiI	TTATAA	1 cut(s)	50
Psp124BI	GAGCTC	2 cut(s)	381, 1381
Psp6I	CCWGG	2 cut(s)	333, 386
PspGI	CCWGG	2 cut(s)	333, 386
PspN4I	GGNNCC	6 cut(s)	332, 343, 385, 435, 455, 496
PspPI	GGNCC	2 cut(s)	341, 383
PstNI	CAGNNNCTG	1 cut(s)	1343
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
RseI	CAYNNNNRTG	1 cut(s)	1098
SacI	GAGCTC	2 cut(s)	381, 1381
SaqAI	TTAA	3 cut(s)	606, 698, 867
SatI	GCNGC	7 cut(s)	188, 340, 349, 513, 570, 783, 852
Sau3AI	GATC	8 cut(s)	3, 360, 538, 573, 595, 807, 1177, 1258
Sau96I	GGNCC	2 cut(s)	341, 383
SchI	GAGTC	3 cut(s)	3, 122, 713
ScrFI	CCNGG	4 cut(s)	335, 345, 388, 758
SduI	GDGCHC	4 cut(s)	381, 423, 438, 1381
SfaNI	GCATC	1 cut(s)	516
SfcI	CTRYAG	1 cut(s)	489
SinI	GGWCC	1 cut(s)	383
SmiMI	CAYNNNNRTG	1 cut(s)	1098
SmlI	CTYRAG	1 cut(s)	1380
SmoI	CTYRAG	1 cut(s)	1380
Sse9I	AATT	3 cut(s)	79, 718, 877
SsiI	CCGC	9 cut(s)	166, 185, 188, 339, 457, 726, 851, 854, 1331
SstI	GAGCTC	2 cut(s)	381, 1381
StyD4I	CCNGG	4 cut(s)	333, 343, 386, 756
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	2 cut(s)	41, 1190
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	3 cut(s)	375, 611, 1040
TaqII	GACCGA	1 cut(s)	371
TasI	AATT	3 cut(s)	79, 718, 877
TauI	GCSGC	3 cut(s)	190, 342, 854
TfiI	GAWTC	2 cut(s)	501, 763
Tru1I	TTAA	3 cut(s)	606, 698, 867
Tru9I	TTAA	3 cut(s)	606, 698, 867
TseFI	GTSAC	2 cut(s)	15, 60
TseI	GCWGC	4 cut(s)	348, 512, 569, 782
Tsp45I	GTSAC	2 cut(s)	15, 60
TspDTI	ATGAA	2 cut(s)	1121, 1238
Van91I	CCANNNNNTGG	1 cut(s)	1227
VpaK11BI	GGWCC	1 cut(s)	383
XapI	RAATTY	1 cut(s)	718
XcmI	CCANNNNNNNNNTGG	1 cut(s)	324
XmiI	GTMKAC	2 cut(s)	104, 116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.