Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002772

Physical Location & Seq

Genomic Coordinates Forward (+)

17613569 .. 17613802

Gene Structure 234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g21150.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGAGTCCATGGTTGCATGAGGAATGTAGCCGTTTGGTGGGGGAGGTGTTGCATGAGGATATGATGAAGAGTGTCAAGTACATGGTGGAGGAGTTGGTGAGGAAGAGCAAGGTGGTGTTGTACCAGGGGCAGTTTGACATGAGATGCGGCATGGTTCCGAATGAGGCTTGGGTGAGGACCATGAAATGGGAAGGGATAGAGAGGTTTCTGTCGGCGGATAGGAGAGTGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

78

Amino Acids

9.15

Weight (kDa)

6.72

Isoelectric Point (pI)

53.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	7 - 72	5.2e-12	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15000
fragaria_vesca	FvH4_2g21150 FvH4_2g21240 FvH4_4g32480
malus_domestica	MD13G1025000.v1.1 MD16G1027500.v1.1
prunus_persica	Prupe.1G325200_v2.0.a1
pyrus_communis	pycom16g02330
rosa_chinensis	RchiOBHm_Chr4g0441341 RchiOBHm_Chr6g0287751 RchiOBHm_Chr6g0287771 RchiOBHm_Chr6g0287801
rosa_laevigata	RLG00000006100 RLG00000012469
rosa_multiflora	Rmu_sc0003335.1_g000006 Rmu_sc0003335.1_g000008 Rmu_sc0003877.1_g000008 Rmu_sc0003877.1_g000010 Rmu_sc0008122.1_g000001 Rmu_sc0012909.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382230 Rroxscaffold_7G00181130 Rroxscaffold_7G00181230
rosa_rugosa	Rorug04G0332500 Rorug06G0191600
rosa_samantha	Rh4AG384500 Rh4BG398600 Rh4CG413700 Rh4DG391200 Rh6AG301600 Rh6BG307400 Rh6BG307500 Rh6CG315400 Rh6DG299300 Rh6DG299500 Rh6DG299800 Rh6DG300100
rosa_wichuraiana	Rw4G033190 Rw6G026050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	186
AciI	CCGC	2 cut(s)	147, 215
AfaI	GTAC	2 cut(s)	80, 122
AfiI	CCNNNNNNNGG	2 cut(s)	37, 186
AjnI	CCWGG	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	177
AsuHPI	GGTGA	2 cut(s)	109, 184
AvaII	GGWCC	1 cut(s)	177
BceAI	ACGGC	1 cut(s)	15
BciT130I	CCWGG	1 cut(s)	125
BisI	GCNGC	1 cut(s)	148
BlsI	GCNGC	1 cut(s)	149
Bme1390I	CCNGG	1 cut(s)	125
Bme18I	GGWCC	1 cut(s)	177
BmgT120I	GGNCC	1 cut(s)	177
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	125
BmsI	GCATC	1 cut(s)	134
BsaJI	CCNNGG	2 cut(s)	8, 124
BsaXI	ACNNNNNCTCC	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 186
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	2 cut(s)	8, 124
BseLI	CCNNNNNNNGG	2 cut(s)	37, 186
BseRI	GAGGAG	1 cut(s)	104
BslI	CCNNNNNNNGG	2 cut(s)	37, 186
Bsp19I	CCATGG	1 cut(s)	8
BspACI	CCGC	2 cut(s)	147, 215
BspLI	GGNNCC	1 cut(s)	156
BspQI	GCTCTTC	1 cut(s)	98
BssECI	CCNNGG	2 cut(s)	8, 124
BssT1I	CCWWGG	1 cut(s)	8
Bst2UI	CCWGG	1 cut(s)	125
Bst6I	CTCTTC	2 cut(s)	62, 98
BstDSI	CCRYGG	1 cut(s)	8
BstNI	CCWGG	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	123
BtgI	CCRYGG	1 cut(s)	8
Cfr13I	GGNCC	1 cut(s)	177
Csp6I	GTAC	2 cut(s)	79, 121
CviAII	CATG	7 cut(s)	9, 17, 53, 82, 139, 151, 181
CviJI	RGCY	2 cut(s)	30, 167
CviKI_1	RGCY	2 cut(s)	30, 167
CviQI	GTAC	2 cut(s)	79, 121
Eam1104I	CTCTTC	2 cut(s)	62, 98
EarI	CTCTTC	2 cut(s)	62, 98
EciI	GGCGGA	1 cut(s)	230
Eco130I	CCWWGG	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	123
EcoT14I	CCWWGG	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	8
FaeI	CATG	7 cut(s)	12, 20, 56, 85, 142, 154, 184
FaiI	YATR	8 cut(s)	10, 18, 54, 62, 83, 140, 152, 182
FatI	CATG	7 cut(s)	8, 16, 52, 81, 138, 150, 180
Fnu4HI	GCNGC	1 cut(s)	148
Fsp4HI	GCNGC	1 cut(s)	148
GluI	GCNGC	1 cut(s)	148
Hin1II	CATG	7 cut(s)	12, 20, 56, 85, 142, 154, 184
HinfI	GANTC	1 cut(s)	4
HphI	GGTGA	2 cut(s)	109, 184
Hpy188I	TCNGA	1 cut(s)	159
HpyAV	CCTTC	1 cut(s)	185
HpyCH4V	TGCA	2 cut(s)	16, 52
Hsp92II	CATG	7 cut(s)	12, 20, 56, 85, 142, 154, 184
LguI	GCTCTTC	1 cut(s)	98
LpnPI	CCDG	2 cut(s)	110, 137
LweI	GCATC	1 cut(s)	134
MboII	GAAGA	2 cut(s)	79, 115
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	8 cut(s)	13, 37, 49, 82, 93, 157, 168, 195
MspR9I	CCNGG	1 cut(s)	125
MvaI	CCWGG	1 cut(s)	125
NcoI	CCATGG	1 cut(s)	8
NlaIII	CATG	7 cut(s)	12, 20, 56, 85, 142, 154, 184
NlaIV	GGNNCC	1 cut(s)	156
PciSI	GCTCTTC	1 cut(s)	98
PflMI	CCANNNNNTGG	1 cut(s)	186
PkrI	GCNGC	1 cut(s)	149
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	1 cut(s)	177
RsaI	GTAC	2 cut(s)	80, 122
RsaNI	GTAC	2 cut(s)	79, 121
SapI	GCTCTTC	1 cut(s)	98
SatI	GCNGC	1 cut(s)	148
Sau96I	GGNCC	1 cut(s)	177
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	125
SetI	ASST	3 cut(s)	48, 114, 206
SfaNI	GCATC	1 cut(s)	134
SinI	GGWCC	1 cut(s)	177
SsiI	CCGC	2 cut(s)	147, 215
StyD4I	CCNGG	1 cut(s)	123
StyI	CCWWGG	1 cut(s)	8
TatI	WGTACW	1 cut(s)	78
TauI	GCSGC	1 cut(s)	150
TspDTI	ATGAA	2 cut(s)	80, 197
Van91I	CCANNNNNTGG	1 cut(s)	186
VpaK11BI	GGWCC	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.