Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002772

Physical Location & Seq

Genomic Coordinates Reverse (-)

60287598 .. 60289099

Gene Structure 1502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G033190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGGAGTCTACACCCCAAAACCTGCTGTGCTTCTTCTTCTTCTTCCTCCTCCACCGCACCACAGCCTCATCACCGCCGCCTCTCTTCCCCAAACAAGCCCTCCCCACAAGGTCAGGCTACCTCCCAGTCAACCCCACGACAAACTCTGCCATATACTACACTTTCTATGAAGCTCAAACCCCAATCTCACCTCTCTCACAAACTCCACTCCTCATTTGGCTCCAGGGCGGCCCCGGCTGCTCCTCCATGATCGGCAACTTCTTCGAGCTCGGTCCCTGGCGCGTCAACTTCCACAAGCACCCCTCCGAGCCCCTTGCCTTGGAGCCCAACTCTGGTTCTTGGAACCGCATTTTCGGCTTGGTTTTTCTTGACAATCCTATAGGCACCGGATTCAGCATCGCTGCGAAGTCCGAAGAGATACCAACCGATCAGTTTGGAGTTGCAAAGCACTTGTTCGCTGCGATCACCAAGTTTGTTGAGCTTGATCCAGCTTTTAAGTCGAGGCGTATTTACATTACTGGGGAGAGCTATGCAGGGAAGTATGTTCCGGCTATTGGTTACTACATTTTGAAGAGGAATGCCGAGTTAAGTGAGTCTAAGCGTGTGAATTTGGGCGGTGTTGCTATCGGAGATGGGCTAACAGACCCGGTGATTCAGGTGGCTACTCATGCTGCGAATACTTACTTCTCTGGTTTGATCAATGAGAGGCAGAAGAGTGAGCTGGAGGAGCTTCAAGTTGCGGCGGTGAGGTTGATCAAGGCGAGGAATTGGCGTGAGGCAACGAATGGCCGAAACAGAGTTTTGAGGAGGTTGCAAAATATGACAGGGCTGGCTACTTTGTATGACTACACAAAGAATGCCGACTACGAAACCAGTTTGGTTGGGGAGTTGTTGAGCCATAAGGAGGTGAAGAAGGCGTTGGGGGTGTCGAATGTGTCCATTGTTTTTGAGGAGTGTAGTGATTTAGTGGGAGATGTGTTGCACGCGGATGTGATGAAGAGTGTGAAATACATGGTGGAGTTTCTTGTGAAGAACAGCAAGGTGTTGCTGTATCAAGGGCAGTATGATCTGCGAGACGGTGTGTTTTCCACCGAGGCTTGGGTGAAGACCATGAAATGGGAAGGGATACAGAAGTTTCTGTCGGCAGATCGGAATGTGTGGAAGTTGGGTGGAGAGACTGCCGGTTATGTTCAGAAATGGGGGAGTTTGAGCCAAGTTGCGGTTTCAGGTGCTGGTCATCTTTTGCCAACTGACCAGCCATTGAGAGCTCAAGCAATGATTGAAGACTGGGTTTTGGATAAAGGGTTGTTTGCCAATGTTCAAGAGGCAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

444

Amino Acids

49.43

Weight (kDa)

7.69

Isoelectric Point (pI)

37.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	33 - 431	2.6e-98	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15000
fragaria_vesca	FvH4_2g21150 FvH4_2g21240 FvH4_4g32480
malus_domestica	MD13G1025000.v1.1 MD16G1027500.v1.1
prunus_persica	Prupe.1G325200_v2.0.a1
pyrus_communis	pycom16g02330
rosa_chinensis	RchiOBHm_Chr4g0441341 RchiOBHm_Chr6g0287751 RchiOBHm_Chr6g0287771 RchiOBHm_Chr6g0287801
rosa_laevigata	RLG00000006100 RLG00000012469
rosa_multiflora	Rmu_sc0003335.1_g000006 Rmu_sc0003335.1_g000008 Rmu_sc0003877.1_g000008 Rmu_sc0003877.1_g000010 Rmu_sc0008122.1_g000001 Rmu_sc0012909.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382230 Rroxscaffold_7G00181130 Rroxscaffold_7G00181230
rosa_rugosa	Rorug04G0332500 Rorug06G0191600
rosa_samantha	Rh4AG384500 Rh4BG398600 Rh4CG413700 Rh4DG391200 Rh6AG301600 Rh6BG307400 Rh6BG307500 Rh6CG315400 Rh6DG299300 Rh6DG299500 Rh6DG299800 Rh6DG300100
rosa_wichuraiana	Rw4G033190 Rw6G026050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	30
AccB1I	GGYRCC	1 cut(s)	383
AccB7I	CCANNNNNTGG	1 cut(s)	1116
AccI	GTMKAC	1 cut(s)	8
AccII	CGCG	2 cut(s)	282, 986
AclWI	GGATC	1 cut(s)	479
AcoI	YGGCCR	1 cut(s)	787
AcsI	RAATTY	1 cut(s)	607
AfiI	CCNNNNNNNGG	7 cut(s)	319, 332, 554, 904, 1098, 1116, 1219
AgsI	TTSAA	4 cut(s)	571, 734, 1283, 1322
AjnI	CCWGG	2 cut(s)	222, 275
AjuI	GAANNNNNNNTTGG	2 cut(s)	902, 934
AluBI	AGCT	8 cut(s)	173, 268, 481, 491, 528, 721, 730, 1268
AluI	AGCT	8 cut(s)	173, 268, 481, 491, 528, 721, 730, 1268
Alw21I	GWGCWC	2 cut(s)	270, 1270
Alw26I	GTCTC	2 cut(s)	1068, 1169
AlwI	GGATC	1 cut(s)	479
AlwNI	CAGNNNCTG	1 cut(s)	1232
AoxI	GGCC	2 cut(s)	229, 787
ApeKI	GCWGC	4 cut(s)	237, 401, 458, 671
ApoI	RAATTY	1 cut(s)	607
AspLEI	GCGC	1 cut(s)	282
AspS9I	GGNCC	2 cut(s)	230, 272
AsuC2I	CCSGG	2 cut(s)	234, 647
AsuHPI	GGTGA	7 cut(s)	63, 180, 457, 661, 757, 919, 1114
AvaII	GGWCC	1 cut(s)	272
BaeI	ACNNNNGTAYC	2 cut(s)	1118, 1151
BanI	GGYRCC	1 cut(s)	383
BanII	GRGCYC	4 cut(s)	270, 312, 327, 1270
BbsI	GAAGAC	2 cut(s)	1112, 1290
Bbv12I	GWGCWC	2 cut(s)	270, 1270
BbvI	GCAGC	4 cut(s)	224, 388, 445, 658
BccI	CCATC	1 cut(s)	626
BcgI	CGANNNNNNTGC	4 cut(s)	244, 278, 296, 330
BciT130I	CCWGG	2 cut(s)	224, 277
BciVI	GTATCC	1 cut(s)	1119
BclI	TGATCA	2 cut(s)	696, 753
BcnI	CCSGG	2 cut(s)	234, 647
BcoDI	GTCTC	2 cut(s)	1068, 1169
BfmI	CTRYAG	1 cut(s)	378
BfuAI	ACCTGC	1 cut(s)	30
BfuI	GTATCC	1 cut(s)	1119
BisI	GCNGC	7 cut(s)	77, 229, 238, 402, 459, 672, 741
BlsI	GCNGC	7 cut(s)	78, 230, 239, 403, 460, 673, 742
Bme1390I	CCNGG	4 cut(s)	224, 234, 277, 647
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	2 cut(s)	230, 272
BmiI	GGNNCC	6 cut(s)	221, 232, 274, 324, 344, 385
BmrFI	CCNGG	4 cut(s)	224, 234, 277, 647
BmrI	ACTGGG	3 cut(s)	119, 528, 1297
BmsI	GCATC	1 cut(s)	405
BmuI	ACTGGG	3 cut(s)	119, 528, 1297
BpiI	GAAGAC	2 cut(s)	1112, 1290
BplI	GAGNNNNNCTC	2 cut(s)	314, 346
BpmI	CTGGAG	2 cut(s)	206, 743
BpuEI	CTTGAG	1 cut(s)	1254
BpuMI	CCSGG	2 cut(s)	234, 647
BsaJI	CCNNGG	5 cut(s)	223, 232, 275, 318, 1092
BsaWI	WCCGGW	1 cut(s)	386
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	7 cut(s)	319, 332, 554, 904, 1098, 1116, 1219
Bse118I	RCCGGY	1 cut(s)	1181
Bse1I	ACTGG	4 cut(s)	125, 523, 873, 1292
Bse3DI	GCAATG	1 cut(s)	1281
BseBI	CCWGG	2 cut(s)	224, 277
BseDI	CCNNGG	5 cut(s)	223, 232, 275, 318, 1092
BseGI	GGATG	1 cut(s)	994
BseLI	CCNNNNNNNGG	7 cut(s)	319, 332, 554, 904, 1098, 1116, 1219
BseMI	GCAATG	1 cut(s)	1281
BseNI	ACTGG	4 cut(s)	125, 523, 873, 1292
BseRI	GAGGAG	6 cut(s)	38, 200, 232, 740, 820, 965
BseXI	GCAGC	4 cut(s)	224, 388, 445, 658
Bsh1236I	CGCG	2 cut(s)	282, 986
BshFI	GGCC	2 cut(s)	231, 789
BshNI	GGYRCC	1 cut(s)	383
BsiHKAI	GWGCWC	2 cut(s)	270, 1270
BsiSI	CCGG	5 cut(s)	234, 387, 548, 647, 1182
BslFI	GGGAC	1 cut(s)	258
BslI	CCNNNNNNNGG	7 cut(s)	319, 332, 554, 904, 1098, 1116, 1219
BsmAI	GTCTC	2 cut(s)	1068, 1169
BsmBI	CGTCTC	1 cut(s)	1068
BsmFI	GGGAC	1 cut(s)	258
BsmI	GAATGC	2 cut(s)	583, 862
BsnI	GGCC	2 cut(s)	231, 789
Bsp1286I	GDGCHC	4 cut(s)	270, 312, 327, 1270
Bsp143I	GATC	8 cut(s)	249, 427, 462, 484, 696, 753, 1066, 1147
BspANI	GGCC	2 cut(s)	231, 789
BspFNI	CGCG	2 cut(s)	282, 986
BspLI	GGNNCC	6 cut(s)	221, 232, 274, 324, 344, 385
BspMI	ACCTGC	1 cut(s)	30
BspPI	GGATC	1 cut(s)	479
BspT107I	GGYRCC	1 cut(s)	383
BsrDI	GCAATG	1 cut(s)	1281
BsrFI	RCCGGY	1 cut(s)	1181
BsrI	ACTGG	4 cut(s)	125, 523, 873, 1292
BssAI	RCCGGY	1 cut(s)	1181
BssECI	CCNNGG	5 cut(s)	223, 232, 275, 318, 1092
BssMI	GATC	8 cut(s)	249, 427, 462, 484, 696, 753, 1066, 1147
BssT1I	CCWWGG	1 cut(s)	318
Bst2UI	CCWGG	2 cut(s)	224, 277
Bst4CI	ACNGT	1 cut(s)	1079
Bst6I	CTCTTC	5 cut(s)	89, 408, 566, 707, 992
BstC8I	GCNNGC	2 cut(s)	831, 984
BstDEI	CTNAG	1 cut(s)	597
BstF5I	GGATG	1 cut(s)	994
BstFNI	CGCG	2 cut(s)	282, 986
BstHHI	GCGC	1 cut(s)	282
BstKTI	GATC	8 cut(s)	252, 430, 465, 487, 699, 756, 1069, 1150
BstMAI	GTCTC	2 cut(s)	1068, 1169
BstMBI	GATC	8 cut(s)	249, 427, 462, 484, 696, 753, 1066, 1147
BstMWI	GCNNNNNNNGC	5 cut(s)	234, 237, 354, 668, 727
BstNI	CCWGG	2 cut(s)	224, 277
BstSCI	CCNGG	4 cut(s)	222, 232, 275, 645
BstSFI	CTRYAG	1 cut(s)	378
BstUI	CGCG	2 cut(s)	282, 986
BstV1I	GCAGC	4 cut(s)	224, 388, 445, 658
BstV2I	GAAGAC	2 cut(s)	1112, 1290
BsuI	GTATCC	1 cut(s)	1119
BsuRI	GGCC	2 cut(s)	231, 789
BtgZI	GCGATG	1 cut(s)	382
BtsCI	GGATG	1 cut(s)	994
BveI	ACCTGC	1 cut(s)	30
Cac8I	GCNNGC	2 cut(s)	831, 984
CaiI	CAGNNNCTG	1 cut(s)	1232
CfoI	GCGC	1 cut(s)	282
Cfr10I	RCCGGY	1 cut(s)	1181
Cfr13I	GGNCC	2 cut(s)	230, 272
CseI	GACGC	1 cut(s)	271
CviAII	CATG	4 cut(s)	247, 668, 1012, 1111
DdeI	CTNAG	1 cut(s)	597
DpnI	GATC	8 cut(s)	251, 429, 464, 486, 698, 755, 1068, 1149
DpnII	GATC	8 cut(s)	249, 427, 462, 484, 696, 753, 1066, 1147
EaeI	YGGCCR	1 cut(s)	787
Eam1104I	CTCTTC	5 cut(s)	89, 408, 566, 707, 992
EarI	CTCTTC	5 cut(s)	89, 408, 566, 707, 992
Ecl136II	GAGCTC	2 cut(s)	268, 1268
Eco130I	CCWWGG	1 cut(s)	318
Eco24I	GRGCYC	4 cut(s)	270, 312, 327, 1270
Eco47I	GGWCC	1 cut(s)	272
Eco53kI	GAGCTC	2 cut(s)	268, 1268
EcoICRI	GAGCTC	2 cut(s)	268, 1268
EcoRII	CCWGG	2 cut(s)	222, 275
EcoT14I	CCWWGG	1 cut(s)	318
EcoT38I	GRGCYC	4 cut(s)	270, 312, 327, 1270
ErhI	CCWWGG	1 cut(s)	318
Esp3I	CGTCTC	1 cut(s)	1068
FaeI	CATG	4 cut(s)	250, 671, 1015, 1114
FaqI	GGGAC	1 cut(s)	258
FatI	CATG	4 cut(s)	246, 667, 1011, 1110
FbaI	TGATCA	2 cut(s)	696, 753
FblI	GTMKAC	1 cut(s)	8
Fnu4HI	GCNGC	7 cut(s)	77, 229, 238, 402, 459, 672, 741
FokI	GGATG	1 cut(s)	1001
FriOI	GRGCYC	4 cut(s)	270, 312, 327, 1270
Fsp4HI	GCNGC	7 cut(s)	77, 229, 238, 402, 459, 672, 741
GlaI	GCGC	1 cut(s)	281
GluI	GCNGC	7 cut(s)	77, 229, 238, 402, 459, 672, 741
GsuI	CTGGAG	2 cut(s)	206, 743
HaeIII	GGCC	2 cut(s)	231, 789
HapII	CCGG	5 cut(s)	234, 387, 548, 647, 1182
HgaI	GACGC	1 cut(s)	271
HhaI	GCGC	1 cut(s)	282
Hin1II	CATG	4 cut(s)	250, 671, 1015, 1114
Hin6I	GCGC	1 cut(s)	280
HinP1I	GCGC	1 cut(s)	280
HincII	GTYRAC	2 cut(s)	130, 286
HindII	GTYRAC	2 cut(s)	130, 286
HinfI	GANTC	4 cut(s)	5, 390, 593, 652
HpaII	CCGG	5 cut(s)	234, 387, 548, 647, 1182
HphI	GGTGA	7 cut(s)	63, 180, 457, 661, 757, 919, 1114
Hpy166II	GTNNAC	3 cut(s)	9, 130, 286
Hpy188I	TCNGA	5 cut(s)	307, 412, 629, 1152, 1194
Hpy188III	TCNNGA	2 cut(s)	368, 1322
Hpy8I	GTNNAC	3 cut(s)	9, 130, 286
HpyAV	CCTTC	2 cut(s)	907, 1115
HpyCH4III	ACNGT	1 cut(s)	1079
HpyCH4V	TGCA	4 cut(s)	443, 533, 814, 982
HpyF10VI	GCNNNNNNNGC	5 cut(s)	234, 237, 354, 668, 727
HpyF3I	CTNAG	1 cut(s)	597
Hsp92II	CATG	4 cut(s)	250, 671, 1015, 1114
HspAI	GCGC	1 cut(s)	280
Ksp22I	TGATCA	2 cut(s)	696, 753
Kzo9I	GATC	8 cut(s)	249, 427, 462, 484, 696, 753, 1066, 1147
LmnI	GCTCC	4 cut(s)	225, 245, 322, 727
Lsp1109I	GCAGC	4 cut(s)	224, 388, 445, 658
LweI	GCATC	1 cut(s)	405
MaeIII	GTNAC	1 cut(s)	557
MalI	GATC	8 cut(s)	251, 429, 464, 486, 698, 755, 1068, 1149
MboI	GATC	8 cut(s)	249, 427, 462, 484, 696, 753, 1066, 1147
MhlI	GDGCHC	4 cut(s)	270, 312, 327, 1270
MluCI	AATT	2 cut(s)	607, 766
MlyI	GAGTC	2 cut(s)	14, 602
MseI	TTAA	2 cut(s)	495, 587
MslI	CAYNNNNRTG	1 cut(s)	987
MspI	CCGG	5 cut(s)	234, 387, 548, 647, 1182
MspR9I	CCNGG	4 cut(s)	224, 234, 277, 647
Mva1269I	GAATGC	2 cut(s)	583, 862
MvaI	CCWGG	2 cut(s)	224, 277
MvnI	CGCG	2 cut(s)	282, 986
MwoI	GCNNNNNNNGC	5 cut(s)	234, 237, 354, 668, 727
NciI	CCSGG	2 cut(s)	234, 647
NdeII	GATC	8 cut(s)	249, 427, 462, 484, 696, 753, 1066, 1147
NlaIII	CATG	4 cut(s)	250, 671, 1015, 1114
NlaIV	GGNNCC	6 cut(s)	221, 232, 274, 324, 344, 385
NmeAIII	GCCGAG	1 cut(s)	607
PctI	GAATGC	2 cut(s)	583, 862
PfeI	GAWTC	2 cut(s)	390, 652
PflMI	CCANNNNNTGG	1 cut(s)	1116
PkrI	GCNGC	7 cut(s)	78, 230, 239, 403, 460, 673, 742
PleI	GAGTC	2 cut(s)	13, 601
PpsI	GAGTC	2 cut(s)	13, 601
Psp124BI	GAGCTC	2 cut(s)	270, 1270
Psp6I	CCWGG	2 cut(s)	222, 275
PspGI	CCWGG	2 cut(s)	222, 275
PspN4I	GGNNCC	6 cut(s)	221, 232, 274, 324, 344, 385
PspPI	GGNCC	2 cut(s)	230, 272
PstNI	CAGNNNCTG	1 cut(s)	1232
RseI	CAYNNNNRTG	1 cut(s)	987
SacI	GAGCTC	2 cut(s)	270, 1270
SaqAI	TTAA	2 cut(s)	495, 587
SatI	GCNGC	7 cut(s)	77, 229, 238, 402, 459, 672, 741
Sau3AI	GATC	8 cut(s)	249, 427, 462, 484, 696, 753, 1066, 1147
Sau96I	GGNCC	2 cut(s)	230, 272
SchI	GAGTC	2 cut(s)	14, 602
ScrFI	CCNGG	4 cut(s)	224, 234, 277, 647
SduI	GDGCHC	4 cut(s)	270, 312, 327, 1270
SfaNI	GCATC	1 cut(s)	405
SfcI	CTRYAG	1 cut(s)	378
SinI	GGWCC	1 cut(s)	272
SmiMI	CAYNNNNRTG	1 cut(s)	987
SmlI	CTYRAG	1 cut(s)	1269
SmoI	CTYRAG	1 cut(s)	1269
Sse9I	AATT	2 cut(s)	607, 766
SstI	GAGCTC	2 cut(s)	270, 1270
StyD4I	CCNGG	4 cut(s)	222, 232, 275, 645
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	1 cut(s)	1079
TaqI	TCGA	3 cut(s)	264, 500, 929
TaqII	GACCGA	1 cut(s)	260
TasI	AATT	2 cut(s)	607, 766
TauI	GCSGC	3 cut(s)	79, 231, 743
TfiI	GAWTC	2 cut(s)	390, 652
Tru1I	TTAA	2 cut(s)	495, 587
Tru9I	TTAA	2 cut(s)	495, 587
TseI	GCWGC	4 cut(s)	237, 401, 458, 671
TspDTI	ATGAA	3 cut(s)	183, 1010, 1127
Van91I	CCANNNNNTGG	1 cut(s)	1116
VpaK11BI	GGWCC	1 cut(s)	272
XapI	RAATTY	1 cut(s)	607
XcmI	CCANNNNNNNNNTGG	1 cut(s)	213
XmiI	GTMKAC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.