Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002772

Physical Location & Seq

Genomic Coordinates Reverse (-)

50085681 .. 50086790

Gene Structure 1110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG300100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGTCGGCAACTTCTTCGAGCTCGGTCCCTGGCGCGTCAATTTCCACAAACACCCCTCTGATCCCCTCACCTTGGAACCCAACTCCGGTTCCTGGAACCGCATCTTCGGCTTGGTTTTTCTCGACAATCCCATCGGAACCGGGTTCAGTATAGCTTCCACACCCGAAGAGATTCCGAGAAACCAGTTTGCGGTGGCACAACACCTGTTCGCTGCAATTACCGAGTTCATTGAGCTTGATCCTGTGTTTAGGTCGAGGCCTGTTTACATCACTGGGGAGAGCTATGCAGGCAAGTATATTCCGGCAATTGGGTACTACATTTTGCAGAGGAATATTGATGCTGAGAGTTCTGGGTCCGATCGGCATGTGAATTTAGCTGGGGTTGCTATAGGAAATGGGGAGACAGACCCGGTGATCCAAGTGAAAACTCATGCTGTAAATGCTTACTTTTCGGGTTTGATCAATGAGAGGCAGAAGAGGGAGGTAGAGGAGCTTCAATTTGAGGCAGTGGATTTGTCTAGAGCTGGGAAATGGAGCGAGGCGAAAATTGCAAGAAGCAGAGTGTTGGATAGGTTGCAAGACATGACCGGGTTGCCCACTTTGTATGATATCAGAAGGAATGCTAGCTATGAAACGCATTTGGTTGGGGAGTTATTGAGGAATGAGGAGGTGAGGAAGGCTTTGGGGGTGTCGAATGAGTCCATAGTTTTCGAGGAATGTAGCCATTTGGTGGGGGAGGTATTGCATGAGGATATGATGAAGAGTGTGAAGTACATGGTGGAAGAGTTGGTGAGGAAGAGCAAGGTTTTGTTGTACCAGGGGCAGTTTGATATGAGATGTGGCGTGGTTGCGAATGAGGCTTGGGTGAAGACCATGAAATGGGAGGGGATAGAGAGGTTTCTGTCGGCGGATAGGAGAGTTTGGAGATTGGGTGGAGAGGTTGCTGGTTATGTTCAGAAATGGGGGAGTCTGAGCTTTGTTTTGGTCTCAGGGGCTGGTCATCTTGTGCCTGCTGACCAGCCATTAAGAGCTCAAGCAATGATTGAAGACTGGGTTTTGGGTAAAGGGTTGTTTGCCAATGTGGAGGAGGATAACCTGTCATCAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

369

Amino Acids

41.49

Weight (kDa)

5.5

Isoelectric Point (pI)

41.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	2 - 353	6.1e-81	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15000
fragaria_vesca	FvH4_2g21150 FvH4_2g21240 FvH4_4g32480
malus_domestica	MD13G1025000.v1.1 MD16G1027500.v1.1
prunus_persica	Prupe.1G325200_v2.0.a1
pyrus_communis	pycom16g02330
rosa_chinensis	RchiOBHm_Chr4g0441341 RchiOBHm_Chr6g0287751 RchiOBHm_Chr6g0287771 RchiOBHm_Chr6g0287801
rosa_laevigata	RLG00000006100 RLG00000012469
rosa_multiflora	Rmu_sc0003335.1_g000006 Rmu_sc0003335.1_g000008 Rmu_sc0003877.1_g000008 Rmu_sc0003877.1_g000010 Rmu_sc0008122.1_g000001 Rmu_sc0012909.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382230 Rroxscaffold_7G00181130 Rroxscaffold_7G00181230
rosa_rugosa	Rorug04G0332500 Rorug06G0191600
rosa_samantha	Rh4AG384500 Rh4BG398600 Rh4CG413700 Rh4DG391200 Rh6AG301600 Rh6BG307400 Rh6BG307500 Rh6CG315400 Rh6DG299300 Rh6DG299500 Rh6DG299800 Rh6DG300100
rosa_wichuraiana	Rw4G033190 Rw6G026050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	730, 879
AccII	CGCG	1 cut(s)	36
AciI	CCGC	3 cut(s)	100, 191, 908
AclWI	GGATC	3 cut(s)	56, 233, 409
AcsI	RAATTY	1 cut(s)	370
AfaI	GTAC	3 cut(s)	314, 773, 815
AfiI	CCNNNNNNNGG	7 cut(s)	73, 86, 93, 190, 308, 730, 879
AgsI	TTSAA	2 cut(s)	497, 1046
AjnI	CCWGG	3 cut(s)	29, 92, 816
Alw21I	GWGCWC	2 cut(s)	24, 1033
Alw26I	GTCTC	2 cut(s)	395, 991
AlwI	GGATC	3 cut(s)	56, 233, 409
AlwNI	CAGNNNCTG	1 cut(s)	995
AoxI	GGCC	1 cut(s)	257
ApeKI	GCWGC	1 cut(s)	212
ApoI	RAATTY	1 cut(s)	370
Asp700I	GAANNNNTTC	1 cut(s)	171
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	2 cut(s)	26, 354
AsuC2I	CCSGG	3 cut(s)	142, 410, 589
AsuHPI	GGTGA	5 cut(s)	61, 424, 682, 802, 877
AsuNHI	GCTAGC	1 cut(s)	623
AvaII	GGWCC	2 cut(s)	26, 354
BanII	GRGCYC	2 cut(s)	24, 1033
BarI	GAAGNNNNNNTAC	2 cut(s)	477, 509
BbsI	GAAGAC	2 cut(s)	875, 1053
Bbv12I	GWGCWC	2 cut(s)	24, 1033
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	1 cut(s)	140
BcgI	CGANNNNNNTGC	1 cut(s)	32
BciT130I	CCWGG	3 cut(s)	31, 94, 818
BclI	TGATCA	1 cut(s)	459
BcnI	CCSGG	3 cut(s)	142, 410, 589
BcoDI	GTCTC	2 cut(s)	395, 991
BfaI	CTAG	2 cut(s)	519, 624
BfmI	CTRYAG	1 cut(s)	387
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
Bme1390I	CCNGG	6 cut(s)	31, 94, 142, 410, 589, 818
Bme18I	GGWCC	2 cut(s)	26, 354
BmgT120I	GGNCC	2 cut(s)	26, 354
BmiI	GGNNCC	6 cut(s)	28, 78, 91, 98, 139, 355
BmrFI	CCNGG	6 cut(s)	31, 94, 142, 410, 589, 818
BmrI	ACTGGG	2 cut(s)	282, 1060
BmsI	GCATC	2 cut(s)	111, 328
BmtI	GCTAGC	1 cut(s)	627
BmuI	ACTGGG	2 cut(s)	282, 1060
BpiI	GAAGAC	2 cut(s)	875, 1053
BpuEI	CTTGAG	1 cut(s)	1017
BpuMI	CCSGG	3 cut(s)	142, 410, 589
BsaI	GGTCTC	1 cut(s)	991
BsaJI	CCNNGG	3 cut(s)	29, 72, 817
BsaWI	WCCGGW	1 cut(s)	86
BsaXI	ACNNNNNCTCC	2 cut(s)	916, 946
Bsc4I	CCNNNNNNNGG	7 cut(s)	73, 86, 93, 190, 308, 730, 879
Bse1I	ACTGG	3 cut(s)	184, 277, 1055
Bse3DI	GCAATG	1 cut(s)	1044
BseBI	CCWGG	3 cut(s)	31, 94, 818
BseDI	CCNNGG	3 cut(s)	29, 72, 817
BseLI	CCNNNNNNNGG	7 cut(s)	73, 86, 93, 190, 308, 730, 879
BseMI	GCAATG	1 cut(s)	1044
BseMII	CTCAG	3 cut(s)	333, 962, 1002
BseNI	ACTGG	3 cut(s)	184, 277, 1055
BseRI	GAGGAG	3 cut(s)	503, 680, 1100
BseXI	GCAGC	1 cut(s)	199
BseYI	CCCAGC	2 cut(s)	377, 524
Bsh1236I	CGCG	1 cut(s)	36
Bsh1285I	CGRYCG	1 cut(s)	361
BshFI	GGCC	1 cut(s)	259
BsiEI	CGRYCG	1 cut(s)	361
BsiHKAI	GWGCWC	2 cut(s)	24, 1033
BsiSI	CCGG	5 cut(s)	87, 141, 302, 410, 588
BslFI	GGGAC	1 cut(s)	12
BslI	CCNNNNNNNGG	7 cut(s)	73, 86, 93, 190, 308, 730, 879
BsmAI	GTCTC	2 cut(s)	395, 991
BsmFI	GGGAC	1 cut(s)	12
BsmI	GAATGC	1 cut(s)	625
BsnI	GGCC	1 cut(s)	259
Bso31I	GGTCTC	1 cut(s)	991
Bsp1286I	GDGCHC	2 cut(s)	24, 1033
Bsp143I	GATC	5 cut(s)	61, 238, 358, 414, 459
BspACI	CCGC	3 cut(s)	100, 191, 908
BspANI	GGCC	1 cut(s)	259
BspCNI	CTCAG	3 cut(s)	334, 963, 1001
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	6 cut(s)	28, 78, 91, 98, 139, 355
BspOI	GCTAGC	1 cut(s)	627
BspPI	GGATC	3 cut(s)	56, 233, 409
BspQI	GCTCTTC	1 cut(s)	791
BspTNI	GGTCTC	1 cut(s)	991
BsrDI	GCAATG	1 cut(s)	1044
BsrI	ACTGG	3 cut(s)	184, 277, 1055
BssECI	CCNNGG	3 cut(s)	29, 72, 817
BssMI	GATC	5 cut(s)	61, 238, 358, 414, 459
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	3 cut(s)	31, 94, 818
Bst6I	CTCTTC	5 cut(s)	162, 470, 755, 777, 791
BstC8I	GCNNGC	3 cut(s)	289, 625, 1011
BstDEI	CTNAG	3 cut(s)	342, 971, 988
BstFNI	CGCG	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	5 cut(s)	64, 241, 361, 417, 462
BstMAI	GTCTC	2 cut(s)	395, 991
BstMBI	GATC	5 cut(s)	61, 238, 358, 414, 459
BstMCI	CGRYCG	1 cut(s)	361
BstMWI	GCNNNNNNNGC	6 cut(s)	108, 288, 383, 440, 548, 857
BstNI	CCWGG	3 cut(s)	31, 94, 818
BstNSI	RCATGY	1 cut(s)	368
BstSCI	CCNGG	6 cut(s)	29, 92, 140, 408, 587, 816
BstSFI	CTRYAG	1 cut(s)	387
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	199
BstV2I	GAAGAC	2 cut(s)	875, 1053
BsuRI	GGCC	1 cut(s)	259
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	2 cut(s)	270, 513
Cac8I	GCNNGC	3 cut(s)	289, 625, 1011
CaiI	CAGNNNCTG	1 cut(s)	995
CfoI	GCGC	1 cut(s)	36
Cfr13I	GGNCC	2 cut(s)	26, 354
CseI	GACGC	1 cut(s)	25
Csp6I	GTAC	3 cut(s)	313, 772, 814
CviAII	CATG	6 cut(s)	365, 431, 583, 746, 775, 874
CviQI	GTAC	3 cut(s)	313, 772, 814
DdeI	CTNAG	3 cut(s)	342, 971, 988
DpnI	GATC	5 cut(s)	63, 240, 360, 416, 461
DpnII	GATC	5 cut(s)	61, 238, 358, 414, 459
Eam1104I	CTCTTC	5 cut(s)	162, 470, 755, 777, 791
EarI	CTCTTC	5 cut(s)	162, 470, 755, 777, 791
EciI	GGCGGA	1 cut(s)	923
Ecl136II	GAGCTC	2 cut(s)	22, 1031
Eco130I	CCWWGG	1 cut(s)	72
Eco147I	AGGCCT	1 cut(s)	259
Eco24I	GRGCYC	2 cut(s)	24, 1033
Eco31I	GGTCTC	1 cut(s)	991
Eco32I	GATATC	1 cut(s)	610
Eco47I	GGWCC	2 cut(s)	26, 354
Eco53kI	GAGCTC	2 cut(s)	22, 1031
EcoICRI	GAGCTC	2 cut(s)	22, 1031
EcoRII	CCWGG	3 cut(s)	29, 92, 816
EcoRV	GATATC	1 cut(s)	610
EcoT14I	CCWWGG	1 cut(s)	72
EcoT38I	GRGCYC	2 cut(s)	24, 1033
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	6 cut(s)	368, 434, 586, 749, 778, 877
FaqI	GGGAC	1 cut(s)	12
FatI	CATG	6 cut(s)	364, 430, 582, 745, 774, 873
FbaI	TGATCA	1 cut(s)	459
Fnu4HI	GCNGC	1 cut(s)	213
FriOI	GRGCYC	2 cut(s)	24, 1033
Fsp4HI	GCNGC	1 cut(s)	213
FspBI	CTAG	2 cut(s)	519, 624
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	1 cut(s)	213
GsaI	CCCAGC	2 cut(s)	381, 528
HaeIII	GGCC	1 cut(s)	259
HapII	CCGG	5 cut(s)	87, 141, 302, 410, 588
HgaI	GACGC	1 cut(s)	25
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	6 cut(s)	368, 434, 586, 749, 778, 877
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HinfI	GANTC	3 cut(s)	172, 698, 967
HpaII	CCGG	5 cut(s)	87, 141, 302, 410, 588
HphI	GGTGA	5 cut(s)	61, 424, 682, 802, 877
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	7 cut(s)	61, 137, 177, 358, 614, 957, 972
Hpy188III	TCNNGA	2 cut(s)	122, 519
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	2 cut(s)	609, 670
HpyCH4V	TGCA	6 cut(s)	215, 287, 325, 551, 577, 745
HpyF10VI	GCNNNNNNNGC	6 cut(s)	108, 288, 383, 440, 548, 857
HpyF3I	CTNAG	3 cut(s)	342, 971, 988
Hsp92II	CATG	6 cut(s)	368, 434, 586, 749, 778, 877
HspAI	GCGC	1 cut(s)	34
Ksp22I	TGATCA	1 cut(s)	459
Kzo9I	GATC	5 cut(s)	61, 238, 358, 414, 459
LguI	GCTCTTC	1 cut(s)	791
LmnI	GCTCC	2 cut(s)	490, 534
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	2 cut(s)	111, 328
MaeI	CTAG	2 cut(s)	519, 624
MalI	GATC	5 cut(s)	63, 240, 360, 416, 461
MboI	GATC	5 cut(s)	61, 238, 358, 414, 459
MboII	GAAGA	9 cut(s)	7, 97, 179, 487, 772, 794, 808, 880, 1058
MfeI	CAATTG	1 cut(s)	306
MhlI	GDGCHC	2 cut(s)	24, 1033
MluCI	AATT	6 cut(s)	40, 216, 306, 370, 497, 546
MlyI	GAGTC	2 cut(s)	707, 976
MmeI	TCCRAC	1 cut(s)	546
MroXI	GAANNNNTTC	1 cut(s)	171
MseI	TTAA	1 cut(s)	1025
MslI	CAYNNNNRTG	1 cut(s)	1105
MspI	CCGG	5 cut(s)	87, 141, 302, 410, 588
MspR9I	CCNGG	6 cut(s)	31, 94, 142, 410, 589, 818
MunI	CAATTG	1 cut(s)	306
Mva1269I	GAATGC	1 cut(s)	625
MvaI	CCWGG	3 cut(s)	31, 94, 818
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	6 cut(s)	108, 288, 383, 440, 548, 857
NciI	CCSGG	3 cut(s)	142, 410, 589
NdeII	GATC	5 cut(s)	61, 238, 358, 414, 459
NheI	GCTAGC	1 cut(s)	623
NlaIII	CATG	6 cut(s)	368, 434, 586, 749, 778, 877
NlaIV	GGNNCC	6 cut(s)	28, 78, 91, 98, 139, 355
NspI	RCATGY	1 cut(s)	368
PceI	AGGCCT	1 cut(s)	259
PciSI	GCTCTTC	1 cut(s)	791
PctI	GAATGC	1 cut(s)	625
PdmI	GAANNNNTTC	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	172
PflMI	CCANNNNNTGG	2 cut(s)	730, 879
PfoI	TCCNGGA	1 cut(s)	92
PkrI	GCNGC	1 cut(s)	214
Ple19I	CGATCG	1 cut(s)	361
PleI	GAGTC	2 cut(s)	706, 975
PpsI	GAGTC	2 cut(s)	706, 975
Psp124BI	GAGCTC	2 cut(s)	24, 1033
Psp6I	CCWGG	3 cut(s)	29, 92, 816
PspFI	CCCAGC	2 cut(s)	377, 524
PspGI	CCWGG	3 cut(s)	29, 92, 816
PspN4I	GGNNCC	6 cut(s)	28, 78, 91, 98, 139, 355
PspPI	GGNCC	2 cut(s)	26, 354
PstNI	CAGNNNCTG	1 cut(s)	995
PvuI	CGATCG	1 cut(s)	361
RsaI	GTAC	3 cut(s)	314, 773, 815
RsaNI	GTAC	3 cut(s)	313, 772, 814
RseI	CAYNNNNRTG	1 cut(s)	1105
SacI	GAGCTC	2 cut(s)	24, 1033
SapI	GCTCTTC	1 cut(s)	791
SaqAI	TTAA	1 cut(s)	1025
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	5 cut(s)	61, 238, 358, 414, 459
Sau96I	GGNCC	2 cut(s)	26, 354
SchI	GAGTC	2 cut(s)	707, 976
ScrFI	CCNGG	6 cut(s)	31, 94, 142, 410, 589, 818
SduI	GDGCHC	2 cut(s)	24, 1033
SfaNI	GCATC	2 cut(s)	111, 328
SfcI	CTRYAG	1 cut(s)	387
SinI	GGWCC	2 cut(s)	26, 354
SmiMI	CAYNNNNRTG	1 cut(s)	1105
SmlI	CTYRAG	1 cut(s)	1032
SmoI	CTYRAG	1 cut(s)	1032
Sse9I	AATT	6 cut(s)	40, 216, 306, 370, 497, 546
SseBI	AGGCCT	1 cut(s)	259
SsiI	CCGC	3 cut(s)	100, 191, 908
SspI	AATATT	1 cut(s)	334
SspMI	CTAG	2 cut(s)	519, 624
SstI	GAGCTC	2 cut(s)	24, 1033
StuI	AGGCCT	1 cut(s)	259
StyD4I	CCNGG	6 cut(s)	29, 92, 140, 408, 587, 816
StyI	CCWWGG	1 cut(s)	72
TaqI	TCGA	5 cut(s)	18, 123, 254, 692, 711
TaqII	GACCGA	1 cut(s)	14
TasI	AATT	6 cut(s)	40, 216, 306, 370, 497, 546
TatI	WGTACW	1 cut(s)	771
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	1 cut(s)	1025
Tru9I	TTAA	1 cut(s)	1025
TscAI	CASTG	2 cut(s)	277, 513
TseI	GCWGC	1 cut(s)	212
TspDTI	ATGAA	4 cut(s)	217, 645, 773, 890
TspRI	CASTG	2 cut(s)	277, 513
Van91I	CCANNNNNTGG	2 cut(s)	730, 879
VpaK11BI	GGWCC	2 cut(s)	26, 354
XapI	RAATTY	1 cut(s)	370
XbaI	TCTAGA	1 cut(s)	518
XceI	RCATGY	1 cut(s)	368
XmnI	GAANNNNTTC	1 cut(s)	171
XspI	CTAG	2 cut(s)	519, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.