RchiOBHm_Chr6g0287801

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
51075196 .. 51093172
17977 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25820

Sequence Viewer

Length: 1335 bp
ATGGAGTCGACAACAGTCCTCTGCTTCCTCTTCTTCTTCATCATCCACACCATCACAGCCTCACCACCACCTCTCCTCCCAAAACAAGCCCTCCCCACCAAGTCAGGCTACCTTCCAGTCAACCCCACCACAACCTCAGCAATATTCTACACCTTCTATGAAGCCCAGAACCCAACTTCACCTCTCTCCCAAACCCCACTCCTCATTTGGCTGCAGGGCGGCCCCGGCTGCTCCTCCATGGTCGGCAACTTCTTCGAGCTCGGTCCCTGGCGCGTCAATTTCCACAAACACCCCTCTGATCCCCTCACCTTGGAACCCAACTCCGGTTCCTGGAACCGCATCTTCGGCTTGGTTTTTCTCGACAATCCCATCGGAACCGGGTTCAGTATAGCTTCCACACCCGAAGAGATTCCGAGAAACCAGTTTGCGGTGGCACAACACCTGTTCGCTGCAATTACCGAGTTCATTGAGCTTGATCCTGTGTTTAGGTCGAGGCCTGTTTACATCACTGGGGAGAGCTATGCAGGCAAGTATATTCCGGCAATTGGGTACTACATTTTGCAGAGGAATATTGATGCTGAGAGTTCTGGGTCCGATCGGCATGTGAATTTAGCTGGGGTTGCTATAGGAAATGGGGAGACAGACCCGGTGATCCAAGTGAAAACTCATGCTGTAAATGCTTACTTTTCGGGTTTGATCAATGAGAGGCAGAAGAGGGAGGTAGAGGAGCTTCAATTTGAGGCAGTGGATTTGTCTAGAGCTGGGAAATGGAGCGAGGCGAAAATTGCAAGAAGCAGAGTGTTGGATAGGTTGCAAGACATGACCGGGTTGCCCACTTTGTATGATATCAGAAGGAATGCTAGCTATGAAACGCATTTGGTTGGGGAGTTATTGAGGAATGAGGAGGTGAGGAAGGCTTTGGGGTCCATAGTTTTCGAGGAATGTAGCCATTTGGTGGGGGAGGTATTGCATGAGGATATGATGAAGAGTGTGAAGTACATGGTGGAAGAGTTGGTGAGGAAGAGCAAGGTTTTGTTGTACCAGGGGCAGTTTGATATGAGATGTGGCGTGGTTGCGAATGAGGCTTGGGTGAAGACCATGAAATGGGAGGGGATAGAGAGGTTTCTGTCGGCGGATAGGAGAGTTTGGGGATTGGGTGGAGAGGTTGTTGGTTATGTTCAGAAATGGGGGAGTCTGAGCTTTGTTTTGATCTCAGGGGCTGGTCATCTTGTGCCTGCTGACCAGCCATTAAGAGCTCAAGCAATGATTGAAGACTGGGTTTTGGGTAAAGGGTTGTTTGCCAATGTGGAGGAGGATAACTTGTCATCAATATGA

Protein Analysis

444

Amino Acids

49.58

Weight (kDa)

5.57

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 30 - 428 2.5e-99 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 955, 1104
AccI GTMKAC 1 cut(s) 8
AccII CGCG 1 cut(s) 273
AciI CCGC 4 cut(s) 219, 337, 428, 1133
AclWI GGATC 3 cut(s) 293, 470, 646
AcsI RAATTY 1 cut(s) 607
AfaI GTAC 3 cut(s) 551, 998, 1040
AfiI CCNNNNNNNGG 7 cut(s) 310, 323, 330, 427, 545, 955, 1104
AgsI TTSAA 2 cut(s) 734, 1271
AjnI CCWGG 3 cut(s) 266, 329, 1041
Alw21I GWGCWC 2 cut(s) 261, 1258
Alw26I GTCTC 1 cut(s) 632
AlwI GGATC 3 cut(s) 293, 470, 646
AlwNI CAGNNNCTG 1 cut(s) 1220
AoxI GGCC 2 cut(s) 220, 494
ApeKI GCWGC 3 cut(s) 211, 228, 449
ApoI RAATTY 1 cut(s) 607
Asp700I GAANNNNTTC 1 cut(s) 408
AspLEI GCGC 1 cut(s) 273
AspS9I GGNCC 4 cut(s) 221, 263, 591, 924
AsuC2I CCSGG 4 cut(s) 225, 379, 647, 826
AsuHPI GGTGA 7 cut(s) 54, 171, 298, 661, 919, 1027, 1102
AsuNHI GCTAGC 1 cut(s) 860
AvaII GGWCC 3 cut(s) 263, 591, 924
BanII GRGCYC 2 cut(s) 261, 1258
BarI GAAGNNNNNNTAC 2 cut(s) 714, 746
BbsI GAAGAC 2 cut(s) 1100, 1278
Bbv12I GWGCWC 2 cut(s) 261, 1258
BbvCI CCTCAGC 1 cut(s) 136
BbvI GCAGC 3 cut(s) 198, 215, 436
BccI CCATC 2 cut(s) 59, 377
BcgI CGANNNNNNTGC 2 cut(s) 235, 269
BciT130I CCWGG 3 cut(s) 268, 331, 1043
BclI TGATCA 1 cut(s) 696
BcnI CCSGG 4 cut(s) 225, 379, 647, 826
BcoDI GTCTC 1 cut(s) 632
BfaI CTAG 2 cut(s) 756, 861
BfmI CTRYAG 2 cut(s) 212, 624
BisI GCNGC 4 cut(s) 212, 220, 229, 450
BlsI GCNGC 4 cut(s) 213, 221, 230, 451
Bme1390I CCNGG 7 cut(s) 225, 268, 331, 379, 647, 826, 1043
Bme18I GGWCC 3 cut(s) 263, 591, 924
BmgT120I GGNCC 4 cut(s) 221, 263, 591, 924
BmiI GGNNCC 8 cut(s) 223, 265, 315, 328, 335, 376, 592, 925
BmrFI CCNGG 7 cut(s) 225, 268, 331, 379, 647, 826, 1043
BmrI ACTGGG 2 cut(s) 519, 1285
BmsI GCATC 2 cut(s) 348, 565
BmtI GCTAGC 1 cut(s) 864
BmuI ACTGGG 2 cut(s) 519, 1285
BoxI GACNNNNGTC 1 cut(s) 14
BpiI GAAGAC 2 cut(s) 1100, 1278
Bpu10I CCTNAGC 1 cut(s) 136
BpuEI CTTGAG 1 cut(s) 1242
BpuMI CCSGG 4 cut(s) 225, 379, 647, 826
BsaJI CCNNGG 5 cut(s) 223, 237, 266, 309, 1042
BsaWI WCCGGW 1 cut(s) 323
BsaXI ACNNNNNCTCC 8 cut(s) 57, 60, 75, 87, 90, 105, 1152, 1182
Bsc4I CCNNNNNNNGG 7 cut(s) 310, 323, 330, 427, 545, 955, 1104
Bse1I ACTGG 4 cut(s) 116, 421, 514, 1280
Bse3DI GCAATG 1 cut(s) 1269
BseBI CCWGG 3 cut(s) 268, 331, 1043
BseDI CCNNGG 5 cut(s) 223, 237, 266, 309, 1042
BseGI GGATG 1 cut(s) 42
BseLI CCNNNNNNNGG 7 cut(s) 310, 323, 330, 427, 545, 955, 1104
BseMI GCAATG 1 cut(s) 1269
BseMII CTCAG 4 cut(s) 150, 570, 1187, 1227
BseNI ACTGG 4 cut(s) 116, 421, 514, 1280
BseRI GAGGAG 6 cut(s) 65, 191, 223, 740, 917, 1325
BseXI GCAGC 3 cut(s) 198, 215, 436
BseYI CCCAGC 2 cut(s) 614, 761
Bsh1236I CGCG 1 cut(s) 273
Bsh1285I CGRYCG 1 cut(s) 598
BshFI GGCC 2 cut(s) 222, 496
BsiEI CGRYCG 1 cut(s) 598
BsiHKAI GWGCWC 2 cut(s) 261, 1258
BsiSI CCGG 6 cut(s) 225, 324, 378, 539, 647, 825
BslFI GGGAC 1 cut(s) 249
BslI CCNNNNNNNGG 7 cut(s) 310, 323, 330, 427, 545, 955, 1104
BsmAI GTCTC 1 cut(s) 632
BsmFI GGGAC 1 cut(s) 249
BsmI GAATGC 1 cut(s) 862
BsnI GGCC 2 cut(s) 222, 496
Bsp1286I GDGCHC 2 cut(s) 261, 1258
Bsp143I GATC 6 cut(s) 298, 475, 595, 651, 696, 1209
Bsp19I CCATGG 1 cut(s) 237
BspACI CCGC 4 cut(s) 219, 337, 428, 1133
BspANI GGCC 2 cut(s) 222, 496
BspCNI CTCAG 4 cut(s) 149, 571, 1188, 1226
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 8 cut(s) 223, 265, 315, 328, 335, 376, 592, 925
BspMAI CTGCAG 1 cut(s) 216
BspOI GCTAGC 1 cut(s) 864
BspPI GGATC 3 cut(s) 293, 470, 646
BspQI GCTCTTC 1 cut(s) 1016
BsrDI GCAATG 1 cut(s) 1269
BsrI ACTGG 4 cut(s) 116, 421, 514, 1280
BssECI CCNNGG 5 cut(s) 223, 237, 266, 309, 1042
BssMI GATC 6 cut(s) 298, 475, 595, 651, 696, 1209
BssT1I CCWWGG 2 cut(s) 237, 309
Bst2UI CCWGG 3 cut(s) 268, 331, 1043
Bst4CI ACNGT 1 cut(s) 16
Bst6I CTCTTC 6 cut(s) 35, 399, 707, 980, 1002, 1016
BstC8I GCNNGC 3 cut(s) 526, 862, 1236
BstDEI CTNAG 4 cut(s) 136, 579, 1196, 1213
BstDSI CCRYGG 1 cut(s) 237
BstF5I GGATG 1 cut(s) 42
BstFNI CGCG 1 cut(s) 273
BstHHI GCGC 1 cut(s) 273
BstKTI GATC 6 cut(s) 301, 478, 598, 654, 699, 1212
BstMAI GTCTC 1 cut(s) 632
BstMBI GATC 6 cut(s) 298, 475, 595, 651, 696, 1209
BstMCI CGRYCG 1 cut(s) 598
BstMWI GCNNNNNNNGC 8 cut(s) 225, 228, 345, 525, 620, 677, 785, 1082
BstNI CCWGG 3 cut(s) 268, 331, 1043
BstNSI RCATGY 1 cut(s) 605
BstPAI GACNNNNGTC 1 cut(s) 14
BstSCI CCNGG 7 cut(s) 223, 266, 329, 377, 645, 824, 1041
BstSFI CTRYAG 2 cut(s) 212, 624
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 3 cut(s) 198, 215, 436
BstV2I GAAGAC 2 cut(s) 1100, 1278
BsuRI GGCC 2 cut(s) 222, 496
BtgI CCRYGG 1 cut(s) 237
BtsCI GGATG 1 cut(s) 42
BtsI GCAGTG 1 cut(s) 750
BtsIMutI CAGTG 2 cut(s) 507, 750
Cac8I GCNNGC 3 cut(s) 526, 862, 1236
CaiI CAGNNNCTG 1 cut(s) 1220
CfoI GCGC 1 cut(s) 273
Cfr13I GGNCC 4 cut(s) 221, 263, 591, 924
CseI GACGC 1 cut(s) 262
Csp6I GTAC 3 cut(s) 550, 997, 1039
CviAII CATG 7 cut(s) 238, 602, 668, 820, 971, 1000, 1099
CviQI GTAC 3 cut(s) 550, 997, 1039
DdeI CTNAG 4 cut(s) 136, 579, 1196, 1213
DpnI GATC 6 cut(s) 300, 477, 597, 653, 698, 1211
DpnII GATC 6 cut(s) 298, 475, 595, 651, 696, 1209
Eam1104I CTCTTC 6 cut(s) 35, 399, 707, 980, 1002, 1016
EarI CTCTTC 6 cut(s) 35, 399, 707, 980, 1002, 1016
EciI GGCGGA 1 cut(s) 1148
Ecl136II GAGCTC 2 cut(s) 259, 1256
Eco130I CCWWGG 2 cut(s) 237, 309
Eco147I AGGCCT 1 cut(s) 496
Eco24I GRGCYC 2 cut(s) 261, 1258
Eco32I GATATC 1 cut(s) 847
Eco47I GGWCC 3 cut(s) 263, 591, 924
Eco53kI GAGCTC 2 cut(s) 259, 1256
EcoICRI GAGCTC 2 cut(s) 259, 1256
EcoRII CCWGG 3 cut(s) 266, 329, 1041
EcoRV GATATC 1 cut(s) 847
EcoT14I CCWWGG 2 cut(s) 237, 309
EcoT38I GRGCYC 2 cut(s) 261, 1258
ErhI CCWWGG 2 cut(s) 237, 309
FaeI CATG 7 cut(s) 241, 605, 671, 823, 974, 1003, 1102
FaqI GGGAC 1 cut(s) 249
FatI CATG 7 cut(s) 237, 601, 667, 819, 970, 999, 1098
FbaI TGATCA 1 cut(s) 696
FblI GTMKAC 1 cut(s) 8
Fnu4HI GCNGC 4 cut(s) 212, 220, 229, 450
FokI GGATG 1 cut(s) 29
FriOI GRGCYC 2 cut(s) 261, 1258
Fsp4HI GCNGC 4 cut(s) 212, 220, 229, 450
FspBI CTAG 2 cut(s) 756, 861
GlaI GCGC 1 cut(s) 272
GluI GCNGC 4 cut(s) 212, 220, 229, 450
GsaI CCCAGC 2 cut(s) 618, 765
HaeIII GGCC 2 cut(s) 222, 496
HapII CCGG 6 cut(s) 225, 324, 378, 539, 647, 825
HgaI GACGC 1 cut(s) 262
HhaI GCGC 1 cut(s) 273
Hin1II CATG 7 cut(s) 241, 605, 671, 823, 974, 1003, 1102
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HincII GTYRAC 2 cut(s) 9, 121
HindII GTYRAC 2 cut(s) 9, 121
HinfI GANTC 3 cut(s) 5, 409, 1192
HpaII CCGG 6 cut(s) 225, 324, 378, 539, 647, 825
HphI GGTGA 7 cut(s) 54, 171, 298, 661, 919, 1027, 1102
Hpy166II GTNNAC 3 cut(s) 9, 121, 502
Hpy188I TCNGA 7 cut(s) 298, 374, 414, 595, 851, 1182, 1197
Hpy188III TCNNGA 2 cut(s) 359, 756
Hpy8I GTNNAC 3 cut(s) 9, 121, 502
HpyAV CCTTC 4 cut(s) 122, 163, 846, 907
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4V TGCA 7 cut(s) 214, 452, 524, 562, 788, 814, 970
HpyF10VI GCNNNNNNNGC 8 cut(s) 225, 228, 345, 525, 620, 677, 785, 1082
HpyF3I CTNAG 4 cut(s) 136, 579, 1196, 1213
Hsp92II CATG 7 cut(s) 241, 605, 671, 823, 974, 1003, 1102
HspAI GCGC 1 cut(s) 271
Ksp22I TGATCA 1 cut(s) 696
Kzo9I GATC 6 cut(s) 298, 475, 595, 651, 696, 1209
LguI GCTCTTC 1 cut(s) 1016
LmnI GCTCC 3 cut(s) 236, 727, 771
Lsp1109I GCAGC 3 cut(s) 198, 215, 436
LweI GCATC 2 cut(s) 348, 565
MaeI CTAG 2 cut(s) 756, 861
MalI GATC 6 cut(s) 300, 477, 597, 653, 698, 1211
MboI GATC 6 cut(s) 298, 475, 595, 651, 696, 1209
MfeI CAATTG 1 cut(s) 543
MhlI GDGCHC 2 cut(s) 261, 1258
MluCI AATT 6 cut(s) 277, 453, 543, 607, 734, 783
MlyI GAGTC 2 cut(s) 14, 1201
MmeI TCCRAC 1 cut(s) 783
MroXI GAANNNNTTC 1 cut(s) 408
MseI TTAA 1 cut(s) 1250
MslI CAYNNNNRTG 1 cut(s) 1330
MspI CCGG 6 cut(s) 225, 324, 378, 539, 647, 825
MspR9I CCNGG 7 cut(s) 225, 268, 331, 379, 647, 826, 1043
MunI CAATTG 1 cut(s) 543
Mva1269I GAATGC 1 cut(s) 862
MvaI CCWGG 3 cut(s) 268, 331, 1043
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 8 cut(s) 225, 228, 345, 525, 620, 677, 785, 1082
NciI CCSGG 4 cut(s) 225, 379, 647, 826
NcoI CCATGG 1 cut(s) 237
NdeII GATC 6 cut(s) 298, 475, 595, 651, 696, 1209
NheI GCTAGC 1 cut(s) 860
NlaIII CATG 7 cut(s) 241, 605, 671, 823, 974, 1003, 1102
NlaIV GGNNCC 8 cut(s) 223, 265, 315, 328, 335, 376, 592, 925
NspI RCATGY 1 cut(s) 605
PceI AGGCCT 1 cut(s) 496
PciSI GCTCTTC 1 cut(s) 1016
PctI GAATGC 1 cut(s) 862
PdmI GAANNNNTTC 1 cut(s) 408
PfeI GAWTC 1 cut(s) 409
PflMI CCANNNNNTGG 2 cut(s) 955, 1104
PfoI TCCNGGA 1 cut(s) 329
PkrI GCNGC 4 cut(s) 213, 221, 230, 451
Ple19I CGATCG 1 cut(s) 598
PleI GAGTC 2 cut(s) 13, 1200
PpsI GAGTC 2 cut(s) 13, 1200
PshAI GACNNNNGTC 1 cut(s) 14
Psp124BI GAGCTC 2 cut(s) 261, 1258
Psp6I CCWGG 3 cut(s) 266, 329, 1041
PspFI CCCAGC 2 cut(s) 614, 761
PspGI CCWGG 3 cut(s) 266, 329, 1041
PspN4I GGNNCC 8 cut(s) 223, 265, 315, 328, 335, 376, 592, 925
PspPI GGNCC 4 cut(s) 221, 263, 591, 924
PstI CTGCAG 1 cut(s) 216
PstNI CAGNNNCTG 1 cut(s) 1220
PvuI CGATCG 1 cut(s) 598
RsaI GTAC 3 cut(s) 551, 998, 1040
RsaNI GTAC 3 cut(s) 550, 997, 1039
RseI CAYNNNNRTG 1 cut(s) 1330
SacI GAGCTC 2 cut(s) 261, 1258
SalI GTCGAC 1 cut(s) 7
SapI GCTCTTC 1 cut(s) 1016
SaqAI TTAA 1 cut(s) 1250
SatI GCNGC 4 cut(s) 212, 220, 229, 450
Sau3AI GATC 6 cut(s) 298, 475, 595, 651, 696, 1209
Sau96I GGNCC 4 cut(s) 221, 263, 591, 924
SchI GAGTC 2 cut(s) 14, 1201
ScrFI CCNGG 7 cut(s) 225, 268, 331, 379, 647, 826, 1043
SduI GDGCHC 2 cut(s) 261, 1258
SfaNI GCATC 2 cut(s) 348, 565
SfcI CTRYAG 2 cut(s) 212, 624
SinI GGWCC 3 cut(s) 263, 591, 924
SmiMI CAYNNNNRTG 1 cut(s) 1330
SmlI CTYRAG 1 cut(s) 1257
SmoI CTYRAG 1 cut(s) 1257
Sse9I AATT 6 cut(s) 277, 453, 543, 607, 734, 783
SseBI AGGCCT 1 cut(s) 496
SsiI CCGC 4 cut(s) 219, 337, 428, 1133
SspI AATATT 2 cut(s) 144, 571
SspMI CTAG 2 cut(s) 756, 861
SstI GAGCTC 2 cut(s) 261, 1258
StuI AGGCCT 1 cut(s) 496
StyD4I CCNGG 7 cut(s) 223, 266, 329, 377, 645, 824, 1041
StyI CCWWGG 2 cut(s) 237, 309
TaaI ACNGT 1 cut(s) 16
TaqI TCGA 5 cut(s) 8, 255, 360, 491, 936
TaqII GACCGA 1 cut(s) 251
TasI AATT 6 cut(s) 277, 453, 543, 607, 734, 783
TatI WGTACW 1 cut(s) 996
TauI GCSGC 1 cut(s) 222
TfiI GAWTC 1 cut(s) 409
Tru1I TTAA 1 cut(s) 1250
Tru9I TTAA 1 cut(s) 1250
TscAI CASTG 2 cut(s) 514, 750
TseI GCWGC 3 cut(s) 211, 228, 449
TspDTI ATGAA 6 cut(s) 28, 174, 454, 882, 998, 1115
TspRI CASTG 2 cut(s) 514, 750
Van91I CCANNNNNTGG 2 cut(s) 955, 1104
VpaK11BI GGWCC 3 cut(s) 263, 591, 924
XapI RAATTY 1 cut(s) 607
XbaI TCTAGA 1 cut(s) 755
XceI RCATGY 1 cut(s) 605
XcmI CCANNNNNNNNNTGG 1 cut(s) 204
XmiI GTMKAC 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 408
XspI CTAG 2 cut(s) 756, 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.