Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002772

Physical Location & Seq

Genomic Coordinates Reverse (-)

53671677 .. 53672030

Gene Structure 354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG307500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAAGAGTGTGAAGTACATGGTGGAAGAGTTGGTGAGGAAGAGCAAGGTTTTGTTGTACCAGGGGCAATTTGATATGAGATGTGGTGTGGTTACGAATGAGGCTTGGGTGAAGACCATGAAATGGGAGGGGATAGAGAGGTTTCTGTCGGCGGATAGGAGAGTTTGGAGATTGGGTGGAGAGGTTGCTGGTTATGTTCAGAAATGGGGGAGTCTGAGCTTTGTTTTGGTCTCAGGGGCTGGTCATCTTGTGCCTACTGACCAGCCATTAAGAGCTCAAGCAATGATTGAAGACTGGGTTTTGGGTAAAGGGTTGTTTGCCAATGTGGAGGAGGATAACCTGTCATCAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

117

Amino Acids

13.27

Weight (kDa)

7.85

Isoelectric Point (pI)

31.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	1 - 101	1.5e-24	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15000
fragaria_vesca	FvH4_2g21150 FvH4_2g21240 FvH4_4g32480
malus_domestica	MD13G1025000.v1.1 MD16G1027500.v1.1
prunus_persica	Prupe.1G325200_v2.0.a1
pyrus_communis	pycom16g02330
rosa_chinensis	RchiOBHm_Chr4g0441341 RchiOBHm_Chr6g0287751 RchiOBHm_Chr6g0287771 RchiOBHm_Chr6g0287801
rosa_laevigata	RLG00000006100 RLG00000012469
rosa_multiflora	Rmu_sc0003335.1_g000006 Rmu_sc0003335.1_g000008 Rmu_sc0003877.1_g000008 Rmu_sc0003877.1_g000010 Rmu_sc0008122.1_g000001 Rmu_sc0012909.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382230 Rroxscaffold_7G00181130 Rroxscaffold_7G00181230
rosa_rugosa	Rorug04G0332500 Rorug06G0191600
rosa_samantha	Rh4AG384500 Rh4BG398600 Rh4CG413700 Rh4DG391200 Rh6AG301600 Rh6BG307400 Rh6BG307500 Rh6CG315400 Rh6DG299300 Rh6DG299500 Rh6DG299800 Rh6DG300100
rosa_wichuraiana	Rw4G033190 Rw6G026050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	123
AciI	CCGC	1 cut(s)	152
AfaI	GTAC	2 cut(s)	17, 59
AfiI	CCNNNNNNNGG	1 cut(s)	123
AgsI	TTSAA	1 cut(s)	290
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	2 cut(s)	219, 275
AluI	AGCT	2 cut(s)	219, 275
Alw21I	GWGCWC	1 cut(s)	277
Alw26I	GTCTC	1 cut(s)	235
AlwNI	CAGNNNCTG	1 cut(s)	239
AsuHPI	GGTGA	2 cut(s)	46, 121
BanII	GRGCYC	1 cut(s)	277
BbsI	GAAGAC	2 cut(s)	119, 297
Bbv12I	GWGCWC	1 cut(s)	277
BciT130I	CCWGG	1 cut(s)	62
BcoDI	GTCTC	1 cut(s)	235
Bme1390I	CCNGG	1 cut(s)	62
BmrFI	CCNGG	1 cut(s)	62
BmrI	ACTGGG	1 cut(s)	304
BmuI	ACTGGG	1 cut(s)	304
BpiI	GAAGAC	2 cut(s)	119, 297
BpuEI	CTTGAG	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	235
BsaJI	CCNNGG	1 cut(s)	61
BsaXI	ACNNNNNCTCC	2 cut(s)	160, 190
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse1I	ACTGG	1 cut(s)	299
Bse3DI	GCAATG	1 cut(s)	288
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	61
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	2 cut(s)	206, 246
BseNI	ACTGG	1 cut(s)	299
BseRI	GAGGAG	1 cut(s)	344
BsiHKAI	GWGCWC	1 cut(s)	277
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	1 cut(s)	235
Bso31I	GGTCTC	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	277
BspACI	CCGC	1 cut(s)	152
BspCNI	CTCAG	2 cut(s)	207, 245
BspQI	GCTCTTC	1 cut(s)	35
BspTNI	GGTCTC	1 cut(s)	235
BsrDI	GCAATG	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	299
BssECI	CCNNGG	1 cut(s)	61
Bst2UI	CCWGG	1 cut(s)	62
Bst6I	CTCTTC	2 cut(s)	21, 35
BstDEI	CTNAG	2 cut(s)	215, 232
BstMAI	GTCTC	1 cut(s)	235
BstNI	CCWGG	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	60
BstV2I	GAAGAC	2 cut(s)	119, 297
CaiI	CAGNNNCTG	1 cut(s)	239
Csp6I	GTAC	2 cut(s)	16, 58
CviAII	CATG	2 cut(s)	19, 118
CviJI	RGCY	5 cut(s)	104, 219, 239, 265, 275
CviKI_1	RGCY	5 cut(s)	104, 219, 239, 265, 275
CviQI	GTAC	2 cut(s)	16, 58
DdeI	CTNAG	2 cut(s)	215, 232
Eam1104I	CTCTTC	2 cut(s)	21, 35
EarI	CTCTTC	2 cut(s)	21, 35
EciI	GGCGGA	1 cut(s)	167
Ecl136II	GAGCTC	1 cut(s)	275
Eco24I	GRGCYC	1 cut(s)	277
Eco31I	GGTCTC	1 cut(s)	235
Eco53kI	GAGCTC	1 cut(s)	275
EcoICRI	GAGCTC	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	60
EcoT38I	GRGCYC	1 cut(s)	277
FaeI	CATG	2 cut(s)	22, 121
FaiI	YATR	5 cut(s)	20, 77, 119, 195, 352
FatI	CATG	2 cut(s)	18, 117
FriOI	GRGCYC	1 cut(s)	277
Hin1II	CATG	2 cut(s)	22, 121
HinfI	GANTC	1 cut(s)	211
HphI	GGTGA	2 cut(s)	46, 121
Hpy188I	TCNGA	2 cut(s)	201, 216
HpyF3I	CTNAG	2 cut(s)	215, 232
Hsp92II	CATG	2 cut(s)	22, 121
LguI	GCTCTTC	1 cut(s)	35
LpnPI	CCDG	7 cut(s)	47, 74, 174, 219, 225, 275, 280
MaeIII	GTNAC	1 cut(s)	91
MboII	GAAGA	5 cut(s)	16, 38, 52, 124, 302
MhlI	GDGCHC	1 cut(s)	277
MluCI	AATT	1 cut(s)	68
MlyI	GAGTC	1 cut(s)	220
MnlI	CCTC	7 cut(s)	30, 94, 121, 132, 175, 322, 325
MseI	TTAA	1 cut(s)	269
MslI	CAYNNNNRTG	1 cut(s)	349
MspR9I	CCNGG	1 cut(s)	62
MvaI	CCWGG	1 cut(s)	62
NlaIII	CATG	2 cut(s)	22, 121
PciSI	GCTCTTC	1 cut(s)	35
PflMI	CCANNNNNTGG	1 cut(s)	123
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
Psp124BI	GAGCTC	1 cut(s)	277
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PstNI	CAGNNNCTG	1 cut(s)	239
RsaI	GTAC	2 cut(s)	17, 59
RsaNI	GTAC	2 cut(s)	16, 58
RseI	CAYNNNNRTG	1 cut(s)	349
SacI	GAGCTC	1 cut(s)	277
SapI	GCTCTTC	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	269
SchI	GAGTC	1 cut(s)	220
ScrFI	CCNGG	1 cut(s)	62
SduI	GDGCHC	1 cut(s)	277
SetI	ASST	6 cut(s)	51, 143, 186, 221, 277, 342
SmiMI	CAYNNNNRTG	1 cut(s)	349
SmlI	CTYRAG	1 cut(s)	276
SmoI	CTYRAG	1 cut(s)	276
Sse9I	AATT	1 cut(s)	68
SsiI	CCGC	1 cut(s)	152
SstI	GAGCTC	1 cut(s)	277
StyD4I	CCNGG	1 cut(s)	60
TasI	AATT	1 cut(s)	68
TatI	WGTACW	1 cut(s)	15
Tru1I	TTAA	1 cut(s)	269
Tru9I	TTAA	1 cut(s)	269
TspDTI	ATGAA	2 cut(s)	17, 134
Van91I	CCANNNNNTGG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.