Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0019010

Physical Location & Seq

Genomic Coordinates Forward (+)

5471465 .. 5475331

Gene Structure 3867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006239

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGCAGGTTTTCATCTTCAAATCAATAGCAGCTTGCATAGAAAACTCTTCTCAAGGTTTTCATCTTAGTATGTCTCGAATCGTCTTCCGCACTCTCGCCTTCAAGGGCATGCTCAACAGCGTCAAGCAAGGTCTTGGTAGCCCGTCCCCAAAACGATTTGGAGCCAGTAGCAGTAGCAGTAGCGGCTGGAATAAGGGAAACTATCGATTGGCCAGGAGCCCGGGATCGTACACTGGCACTCAGCACATTCGTTGCTATCCAACTACAGGAAAACCTGCGCAAAGTTTCATTATCAGTGGCTTTTGGCCCAGTTTTAACAATGGTTCAATCCCAACCTACTGCGATCCCAACAACCACTTCAATGAAACAAATTATAGGTGTGTCAGTGCTAATCGACGAATTGCAAACAGATTGGCCATCGCTGGCCTGCCCGAGCAGCAACAGTACGCAGCTTTGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004540 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0005886 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009605 GO:0009611 GO:0009718 GO:0009812 GO:0009813 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016070 GO:0016787 GO:0016788 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034641 GO:0042440 GO:0042594 GO:0043170 GO:0044237 GO:0044238 GO:0044464 GO:0046148 GO:0046283 GO:0046483 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0071944 GO:0090304 GO:0090305 GO:0090501 GO:0140098 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_T2

Protein Analysis

154

Amino Acids

16.78

Weight (kDa)

10.16

Isoelectric Point (pI)

54.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019010)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0439751
rosa_laevigata	RLG00000006239
rosa_rugosa	Rorug04G0321400
rosa_samantha	Rh4AG372300 Rh4BG384600 Rh4CG399100 Rh4DG378800
rosa_wichuraiana	Rw4G031790 Rw4G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	279
Acc36I	ACCTGC	1 cut(s)	283
AciI	CCGC	2 cut(s)	88, 183
AclWI	GGATC	2 cut(s)	232, 338
AcoI	YGGCCR	2 cut(s)	210, 414
AfaI	GTAC	2 cut(s)	230, 446
AfiI	CCNNNNNNNGG	1 cut(s)	266
AgsI	TTSAA	4 cut(s)	19, 103, 327, 361
AjnI	CCWGG	1 cut(s)	212
AjuI	GAANNNNNNNTTGG	2 cut(s)	341, 373
AluBI	AGCT	2 cut(s)	32, 452
AluI	AGCT	2 cut(s)	32, 452
Alw26I	GTCTC	1 cut(s)	78
AlwI	GGATC	2 cut(s)	232, 338
Ama87I	CYCGRG	2 cut(s)	220, 431
AoxI	GGCC	4 cut(s)	210, 305, 414, 424
ApeKI	GCWGC	3 cut(s)	29, 436, 449
AspLEI	GCGC	1 cut(s)	280
AspS9I	GGNCC	1 cut(s)	306
AsuC2I	CCSGG	2 cut(s)	221, 222
AvaI	CYCGRG	2 cut(s)	220, 431
BalI	TGGCCA	2 cut(s)	212, 416
BanII	GRGCYC	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	76
BbvI	GCAGC	2 cut(s)	41, 448
BccI	CCATC	1 cut(s)	425
BciT130I	CCWGG	1 cut(s)	214
BcnI	CCSGG	2 cut(s)	221, 222
BcoDI	GTCTC	1 cut(s)	78
BfmI	CTRYAG	1 cut(s)	264
BfuAI	ACCTGC	1 cut(s)	283
BisI	GCNGC	4 cut(s)	30, 184, 437, 450
BlsI	GCNGC	4 cut(s)	31, 185, 438, 451
Bme1390I	CCNGG	3 cut(s)	214, 221, 222
BmeT110I	CYCGRG	2 cut(s)	220, 431
BmgT120I	GGNCC	1 cut(s)	306
BmiI	GGNNCC	2 cut(s)	163, 218
BmrFI	CCNGG	3 cut(s)	214, 221, 222
BmrI	ACTGGG	1 cut(s)	303
BmuI	ACTGGG	1 cut(s)	303
BpiI	GAAGAC	1 cut(s)	76
BpuEI	CTTGAG	1 cut(s)	36
BpuMI	CCSGG	2 cut(s)	221, 222
Bsa29I	ATCGAT	1 cut(s)	205
BsaJI	CCNNGG	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse1I	ACTGG	3 cut(s)	165, 238, 309
BseBI	CCWGG	1 cut(s)	214
BseCI	ATCGAT	1 cut(s)	205
BseDI	CCNNGG	1 cut(s)	220
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMII	CTCAG	1 cut(s)	254
BseNI	ACTGG	3 cut(s)	165, 238, 309
BseXI	GCAGC	2 cut(s)	41, 448
BshFI	GGCC	4 cut(s)	212, 307, 416, 426
BshVI	ATCGAT	1 cut(s)	205
BsiHKCI	CYCGRG	2 cut(s)	220, 431
BsiSI	CCGG	1 cut(s)	221
BslFI	GGGAC	1 cut(s)	130
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmAI	GTCTC	1 cut(s)	78
BsmFI	GGGAC	1 cut(s)	130
BsnI	GGCC	4 cut(s)	212, 307, 416, 426
BsoBI	CYCGRG	2 cut(s)	220, 431
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp143I	GATC	2 cut(s)	224, 343
BspACI	CCGC	2 cut(s)	88, 183
BspANI	GGCC	4 cut(s)	212, 307, 416, 426
BspCNI	CTCAG	1 cut(s)	253
BspDI	ATCGAT	1 cut(s)	205
BspLI	GGNNCC	2 cut(s)	163, 218
BspMI	ACCTGC	1 cut(s)	283
BspPI	GGATC	2 cut(s)	232, 338
BsrI	ACTGG	3 cut(s)	165, 238, 309
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	2 cut(s)	224, 343
Bst2UI	CCWGG	1 cut(s)	214
Bst4CI	ACNGT	1 cut(s)	444
Bst6I	CTCTTC	1 cut(s)	52
BstC8I	GCNNGC	4 cut(s)	34, 110, 424, 428
BstDEI	CTNAG	2 cut(s)	65, 240
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	2 cut(s)	227, 346
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	2 cut(s)	224, 343
BstMWI	GCNNNNNNNGC	2 cut(s)	183, 436
BstNI	CCWGG	1 cut(s)	214
BstNSI	RCATGY	1 cut(s)	112
BstSCI	CCNGG	3 cut(s)	212, 219, 220
BstSFI	CTRYAG	1 cut(s)	264
BstV1I	GCAGC	2 cut(s)	41, 448
BstV2I	GAAGAC	1 cut(s)	76
Bsu15I	ATCGAT	1 cut(s)	205
BsuRI	GGCC	4 cut(s)	212, 307, 416, 426
BsuTUI	ATCGAT	1 cut(s)	205
BtgZI	GCGATG	1 cut(s)	403
BtsIMutI	CAGTG	3 cut(s)	231, 301, 391
BveI	ACCTGC	1 cut(s)	283
Cac8I	GCNNGC	4 cut(s)	34, 110, 424, 428
CfoI	GCGC	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	306
Cfr9I	CCCGGG	1 cut(s)	220
ClaI	ATCGAT	1 cut(s)	205
CseI	GACGC	1 cut(s)	109
Csp6I	GTAC	2 cut(s)	229, 445
CviAII	CATG	1 cut(s)	109
CviQI	GTAC	2 cut(s)	229, 445
DdeI	CTNAG	2 cut(s)	65, 240
DpnI	GATC	2 cut(s)	226, 345
DpnII	GATC	2 cut(s)	224, 343
EaeI	YGGCCR	2 cut(s)	210, 414
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	221
Eco88I	CYCGRG	2 cut(s)	220, 431
EcoRII	CCWGG	1 cut(s)	212
EcoT38I	GRGCYC	1 cut(s)	221
FaeI	CATG	1 cut(s)	112
FaiI	YATR	4 cut(s)	38, 71, 110, 375
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	1 cut(s)	108
Fnu4HI	GCNGC	4 cut(s)	30, 184, 437, 450
FriOI	GRGCYC	1 cut(s)	221
Fsp4HI	GCNGC	4 cut(s)	30, 184, 437, 450
FspI	TGCGCA	1 cut(s)	279
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	4 cut(s)	30, 184, 437, 450
HaeIII	GGCC	4 cut(s)	212, 307, 416, 426
HapII	CCGG	1 cut(s)	221
HgaI	GACGC	1 cut(s)	109
HhaI	GCGC	1 cut(s)	280
Hin1II	CATG	1 cut(s)	112
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HinfI	GANTC	1 cut(s)	78
HpaII	CCGG	1 cut(s)	221
Hpy166II	GTNNAC	1 cut(s)	231
Hpy188III	TCNNGA	1 cut(s)	75
Hpy8I	GTNNAC	1 cut(s)	231
Hpy99I	CGWCG	1 cut(s)	399
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	1 cut(s)	444
HpyCH4V	TGCA	3 cut(s)	4, 36, 404
HpyF10VI	GCNNNNNNNGC	2 cut(s)	183, 436
HpyF3I	CTNAG	2 cut(s)	65, 240
Hsp92II	CATG	1 cut(s)	112
HspAI	GCGC	1 cut(s)	278
Kzo9I	GATC	2 cut(s)	224, 343
LmnI	GCTCC	2 cut(s)	161, 216
Lsp1109I	GCAGC	2 cut(s)	41, 448
MalI	GATC	2 cut(s)	226, 345
MboI	GATC	2 cut(s)	224, 343
MboII	GAAGA	3 cut(s)	7, 39, 76
MhlI	GDGCHC	1 cut(s)	221
MlsI	TGGCCA	2 cut(s)	212, 416
MluCI	AATT	2 cut(s)	370, 399
MluNI	TGGCCA	2 cut(s)	212, 416
MmeI	TCCRAC	1 cut(s)	284
Mox20I	TGGCCA	2 cut(s)	212, 416
MscI	TGGCCA	2 cut(s)	212, 416
MseI	TTAA	1 cut(s)	315
MslI	CAYNNNNRTG	1 cut(s)	360
Msp20I	TGGCCA	2 cut(s)	212, 416
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	3 cut(s)	214, 221, 222
MvaI	CCWGG	1 cut(s)	214
MwoI	GCNNNNNNNGC	2 cut(s)	183, 436
NciI	CCSGG	2 cut(s)	221, 222
NdeII	GATC	2 cut(s)	224, 343
NlaIII	CATG	1 cut(s)	112
NlaIV	GGNNCC	2 cut(s)	163, 218
NsbI	TGCGCA	1 cut(s)	279
NspI	RCATGY	1 cut(s)	112
PaeI	GCATGC	1 cut(s)	112
PfeI	GAWTC	1 cut(s)	78
PkrI	GCNGC	4 cut(s)	31, 185, 438, 451
Psp6I	CCWGG	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	212
PspN4I	GGNNCC	2 cut(s)	163, 218
PspPI	GGNCC	1 cut(s)	306
RsaI	GTAC	2 cut(s)	230, 446
RsaNI	GTAC	2 cut(s)	229, 445
RseI	CAYNNNNRTG	1 cut(s)	360
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	4 cut(s)	30, 184, 437, 450
Sau3AI	GATC	2 cut(s)	224, 343
Sau96I	GGNCC	1 cut(s)	306
ScrFI	CCNGG	3 cut(s)	214, 221, 222
SduI	GDGCHC	1 cut(s)	221
SetI	ASST	8 cut(s)	9, 34, 58, 133, 277, 338, 380, 454
SfcI	CTRYAG	1 cut(s)	264
SmaI	CCCGGG	1 cut(s)	222
SmiMI	CAYNNNNRTG	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	51
SmoI	CTYRAG	1 cut(s)	51
SphI	GCATGC	1 cut(s)	112
Sse9I	AATT	2 cut(s)	370, 399
SsiI	CCGC	2 cut(s)	88, 183
StyD4I	CCNGG	3 cut(s)	212, 219, 220
TaaI	ACNGT	1 cut(s)	444
TaqI	TCGA	3 cut(s)	76, 205, 394
TasI	AATT	2 cut(s)	370, 399
TauI	GCSGC	1 cut(s)	186
TfiI	GAWTC	1 cut(s)	78
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	3 cut(s)	238, 301, 391
TseI	GCWGC	3 cut(s)	29, 436, 449
TspDTI	ATGAA	3 cut(s)	50, 277, 378
TspMI	CCCGGG	1 cut(s)	220
TspRI	CASTG	3 cut(s)	238, 301, 391
XceI	RCATGY	1 cut(s)	112
XmaI	CCCGGG	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.