Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0019010

Physical Location & Seq

Genomic Coordinates Reverse (-)

58991841 .. 58992820

Gene Structure 980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G031810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGATGACCTTTTTCTATCTCGTACAACAGTGGCCAGGATCCTACGGTGGCCCTCAGCACAATATTTGCTATCCAACTACAGGAAAATCTGTACAAAGTTTCATTATTGGGGGCTTTCGGCCAGGTTTTAACAATGGTTCAATCCCAACCTACTGCGATCCCAACAACCCCTTCAATGAAACAAAGTTTGTTAGTGCCGATGATGATAATGCAGCTGTCAGGGATAATCGACGATTTGCAAAAATATTGGCCATTGGCTGGCCTGCCCTAGCAGCAACGGTACGCAGCTTTGGGCCGAAGAATGGGAAAAACATGCATGTCACTTGCTCGCAGTCTGTCCTTGATCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004540 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0005886 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009605 GO:0009611 GO:0009718 GO:0009812 GO:0009813 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016070 GO:0016787 GO:0016788 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034641 GO:0042440 GO:0042594 GO:0043170 GO:0044237 GO:0044238 GO:0044464 GO:0046148 GO:0046283 GO:0046483 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0071944 GO:0090304 GO:0090305 GO:0090501 GO:0140098 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_T2

Protein Analysis

116

Amino Acids

12.82

Weight (kDa)

9.18

Isoelectric Point (pI)

49.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuclease_T2	PF00445	3 - 63	1.4e-08	Ribonuclease T2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019010)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0439751
rosa_laevigata	RLG00000006239
rosa_rugosa	Rorug04G0321400
rosa_samantha	Rh4AG372300 Rh4BG384600 Rh4CG399100 Rh4DG378800
rosa_wichuraiana	Rw4G031790 Rw4G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	258
AclWI	GGATC	3 cut(s)	33, 46, 152
AcoI	YGGCCR	3 cut(s)	32, 119, 249
AfaI	GTAC	3 cut(s)	24, 93, 282
AfiI	CCNNNNNNNGG	3 cut(s)	80, 258, 302
AgsI	TTSAA	2 cut(s)	141, 175
AjnI	CCWGG	2 cut(s)	34, 121
AjuI	GAANNNNNNNTTGG	2 cut(s)	155, 187
AluBI	AGCT	2 cut(s)	215, 288
AluI	AGCT	2 cut(s)	215, 288
AlwI	GGATC	3 cut(s)	33, 46, 152
AoxI	GGCC	6 cut(s)	32, 49, 119, 249, 260, 293
ApeKI	GCWGC	3 cut(s)	212, 272, 285
AspS9I	GGNCC	2 cut(s)	50, 293
BalI	TGGCCA	2 cut(s)	34, 251
BamHI	GGATCC	1 cut(s)	38
BbvCI	CCTCAGC	1 cut(s)	54
BbvI	GCAGC	3 cut(s)	224, 284, 297
BciT130I	CCWGG	2 cut(s)	36, 123
BfaI	CTAG	1 cut(s)	269
BfmI	CTRYAG	1 cut(s)	78
BisI	GCNGC	3 cut(s)	213, 273, 286
BlsI	GCNGC	3 cut(s)	214, 274, 287
Bme1390I	CCNGG	2 cut(s)	36, 123
BmgT120I	GGNCC	2 cut(s)	50, 293
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	2 cut(s)	36, 123
Bpu10I	CCTNAGC	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 258, 302
BseBI	CCWGG	2 cut(s)	36, 123
BseLI	CCNNNNNNNGG	3 cut(s)	80, 258, 302
BseMII	CTCAG	1 cut(s)	68
BseXI	GCAGC	3 cut(s)	224, 284, 297
BshFI	GGCC	6 cut(s)	34, 51, 121, 251, 262, 295
BslI	CCNNNNNNNGG	3 cut(s)	80, 258, 302
BsnI	GGCC	6 cut(s)	34, 51, 121, 251, 262, 295
Bsp1407I	TGTACA	1 cut(s)	91
Bsp143I	GATC	3 cut(s)	38, 157, 343
BspANI	GGCC	6 cut(s)	34, 51, 121, 251, 262, 295
BspCNI	CTCAG	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	40
BspPI	GGATC	3 cut(s)	33, 46, 152
BsrGI	TGTACA	1 cut(s)	91
BssMI	GATC	3 cut(s)	38, 157, 343
Bst2UI	CCWGG	2 cut(s)	36, 123
Bst4CI	ACNGT	3 cut(s)	30, 47, 280
BstAUI	TGTACA	1 cut(s)	91
BstC8I	GCNNGC	3 cut(s)	260, 264, 329
BstDEI	CTNAG	1 cut(s)	54
BstKTI	GATC	3 cut(s)	41, 160, 346
BstMBI	GATC	3 cut(s)	38, 157, 343
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstNI	CCWGG	2 cut(s)	36, 123
BstNSI	RCATGY	2 cut(s)	316, 320
BstSCI	CCNGG	2 cut(s)	34, 121
BstSFI	CTRYAG	1 cut(s)	78
BstV1I	GCAGC	3 cut(s)	224, 284, 297
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
BsuRI	GGCC	6 cut(s)	34, 51, 121, 251, 262, 295
BtsIMutI	CAGTG	1 cut(s)	35
Cac8I	GCNNGC	3 cut(s)	260, 264, 329
Cfr13I	GGNCC	2 cut(s)	50, 293
Csp6I	GTAC	3 cut(s)	23, 92, 281
CviAII	CATG	2 cut(s)	313, 317
CviQI	GTAC	3 cut(s)	23, 92, 281
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	3 cut(s)	40, 159, 345
DpnII	GATC	3 cut(s)	38, 157, 343
EaeI	YGGCCR	3 cut(s)	32, 119, 249
EcoRII	CCWGG	2 cut(s)	34, 121
EcoT22I	ATGCAT	1 cut(s)	318
FaeI	CATG	2 cut(s)	316, 320
FaiI	YATR	2 cut(s)	314, 318
FatI	CATG	2 cut(s)	312, 316
Fnu4HI	GCNGC	3 cut(s)	213, 273, 286
Fsp4HI	GCNGC	3 cut(s)	213, 273, 286
FspBI	CTAG	1 cut(s)	269
GluI	GCNGC	3 cut(s)	213, 273, 286
HaeIII	GGCC	6 cut(s)	34, 51, 121, 251, 262, 295
Hin1II	CATG	2 cut(s)	316, 320
Hpy99I	CGWCG	1 cut(s)	234
HpyAV	CCTTC	1 cut(s)	181
HpyCH4III	ACNGT	3 cut(s)	30, 47, 280
HpyCH4V	TGCA	3 cut(s)	212, 239, 316
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	1 cut(s)	54
Hsp92II	CATG	2 cut(s)	316, 320
Kzo9I	GATC	3 cut(s)	38, 157, 343
LpnPI	CCDG	8 cut(s)	21, 48, 66, 108, 135, 205, 244, 276
Lsp1109I	GCAGC	3 cut(s)	224, 284, 297
MaeI	CTAG	1 cut(s)	269
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	3 cut(s)	40, 159, 345
MboI	GATC	3 cut(s)	38, 157, 343
MboII	GAAGA	1 cut(s)	310
MflI	RGATCY	1 cut(s)	38
MlsI	TGGCCA	2 cut(s)	34, 251
MluNI	TGGCCA	2 cut(s)	34, 251
MmeI	TCCRAC	1 cut(s)	98
MnlI	CCTC	1 cut(s)	63
Mox20I	TGGCCA	2 cut(s)	34, 251
Mph1103I	ATGCAT	1 cut(s)	318
MscI	TGGCCA	2 cut(s)	34, 251
MseI	TTAA	1 cut(s)	129
Msp20I	TGGCCA	2 cut(s)	34, 251
MspA1I	CMGCKG	1 cut(s)	215
MspR9I	CCNGG	2 cut(s)	36, 123
MvaI	CCWGG	2 cut(s)	36, 123
MwoI	GCNNNNNNNGC	1 cut(s)	272
NdeII	GATC	3 cut(s)	38, 157, 343
NlaIII	CATG	2 cut(s)	316, 320
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	319
NsiI	ATGCAT	1 cut(s)	318
NspI	RCATGY	2 cut(s)	316, 320
PflMI	CCANNNNNTGG	1 cut(s)	258
PkrI	GCNGC	3 cut(s)	214, 274, 287
Psp6I	CCWGG	2 cut(s)	34, 121
PspGI	CCWGG	2 cut(s)	34, 121
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	2 cut(s)	50, 293
PsuI	RGATCY	1 cut(s)	38
PvuII	CAGCTG	1 cut(s)	215
RsaI	GTAC	3 cut(s)	24, 93, 282
RsaNI	GTAC	3 cut(s)	23, 92, 281
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	3 cut(s)	213, 273, 286
Sau3AI	GATC	3 cut(s)	38, 157, 343
Sau96I	GGNCC	2 cut(s)	50, 293
ScrFI	CCNGG	2 cut(s)	36, 123
SetI	ASST	5 cut(s)	11, 127, 152, 217, 290
SfcI	CTRYAG	1 cut(s)	78
SspI	AATATT	2 cut(s)	64, 246
SspMI	CTAG	1 cut(s)	269
StyD4I	CCNGG	2 cut(s)	34, 121
TaaI	ACNGT	3 cut(s)	30, 47, 280
TaqI	TCGA	1 cut(s)	229
TatI	WGTACW	1 cut(s)	91
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	1 cut(s)	35
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	3 cut(s)	212, 272, 285
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	2 cut(s)	91, 192
TspRI	CASTG	1 cut(s)	35
Van91I	CCANNNNNTGG	1 cut(s)	258
XceI	RCATGY	2 cut(s)	316, 320
XspI	CTAG	1 cut(s)	269
Zsp2I	ATGCAT	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.