Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0019010

Physical Location & Seq

Genomic Coordinates Reverse (-)

59684770 .. 59688257

Gene Structure 3488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG378800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGACTATGCCCACCACCTGTTCCACCAAATTCCCCACCCGGACATTGTCGTCTTCAACACCATGGCACGTGGTTACTCACGCTCCGATACCCCATTTCGCGCTATTTCACTCTTTTCCCAGGTTCTATCCTCAGGTCTCCTCCCAGATGACTACACATTCCCGGCTCTTCTCAAGGCTTGCGCCGGCTCTAAAGCCTTAGAAGAAGGGAAGCAGTTGCATTGCTATGTTATCAAATATGGAATGCAACTTAACATATTTGTGTGCCCTGCTCTTATAAATATGTACACTGAGTGCGGTGATGTGGATGCAGCTCGCCGGGCTTTTGATAAGATACTGGACCCTTGTGTTGTTGTGCATAATGCTATGATCACAGGGTATGCTAGAAACAGTCGGCCCAATGAGGCATTGGCATTGTTTCGAGAGTTGCAAGCGAGTGGTCTTAAGCCAACCGAGGTTACTATGCTTAGTGCTCTTTCGTCGTGCGCTTTGTTAGGTGCATTGGACTTGGGGAAGTGGATTCATGAGCTGATCGAGTGGCCAGGATCCTACGGTGGCCCTCAGCACAATATTTGCTATCCAACTACAGGAAAACCTGCACAAAGTTTCATTATCGGGGGCTTTCGGCCAGGTTTTAACAATGGTTCAATCCCAACCTACTGCGATCCCAACAACCCCTTCAATGAAACAAAGGTGTCAGGGATAATCGACGATTTGCAAAAATATTGGCCATCGGCTGGCCTGCCCGAGCAGCAACGAGATATATTGAAAGACATCCACGGATACCTCCAAGATTATGGAATCCGACCAGATGGGACAGCGTACAACCTAAACACCCAAATATTATCTGAGAAAATCATTTCTTGGCCTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

291

Amino Acids

32.3

Weight (kDa)

5.97

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	14 - 62	1.4e-07	PPR repeat family
PPR_2	PF13041	115 - 162	2.6e-09	PPR repeat family
PPR	PF01535	118 - 148	2.9e-06	PPR repeat
Ribonuclease_T2	PF00445	179 - 247	1.3e-09	Ribonuclease T2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019010)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0439751
rosa_laevigata	RLG00000006239
rosa_rugosa	Rorug04G0321400
rosa_samantha	Rh4AG372300 Rh4BG384600 Rh4CG399100 Rh4DG378800
rosa_wichuraiana	Rw4G031790 Rw4G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	278
AasI	GACNNNNNNGTC	1 cut(s)	50
Acc36I	ACCTGC	1 cut(s)	604
AccB7I	CCANNNNNTGG	1 cut(s)	737
AccII	CGCG	1 cut(s)	102
AciI	CCGC	1 cut(s)	297
AclWI	GGATC	3 cut(s)	540, 553, 659
AcoI	YGGCCR	3 cut(s)	539, 626, 728
AcsI	RAATTY	1 cut(s)	30
AcvI	CACGTG	1 cut(s)	71
AdeI	CACNNNGTG	1 cut(s)	294
AfaI	GTAC	2 cut(s)	287, 824
AfiI	CCNNNNNNNGG	2 cut(s)	587, 737
AflII	CTTAAG	1 cut(s)	443
AgsI	TTSAA	4 cut(s)	58, 648, 682, 769
AjnI	CCWGG	3 cut(s)	120, 541, 628
AjuI	GAANNNNNNNTTGG	2 cut(s)	662, 694
AluBI	AGCT	2 cut(s)	314, 529
AluI	AGCT	2 cut(s)	314, 529
Alw21I	GWGCWC	1 cut(s)	475
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	3 cut(s)	540, 553, 659
Ama87I	CYCGRG	1 cut(s)	746
AoxI	GGCC	7 cut(s)	395, 539, 556, 626, 728, 739, 866
ApeKI	GCWGC	2 cut(s)	311, 751
ApoI	RAATTY	1 cut(s)	30
AspLEI	GCGC	3 cut(s)	104, 185, 488
AspS9I	GGNCC	3 cut(s)	340, 396, 557
AsuC2I	CCSGG	3 cut(s)	41, 164, 320
AsuHPI	GGTGA	1 cut(s)	311
AvaI	CYCGRG	1 cut(s)	746
AvaII	GGWCC	1 cut(s)	340
AxyI	CCTNAGG	1 cut(s)	133
BaeGI	GKGCMC	1 cut(s)	269
BalI	TGGCCA	2 cut(s)	541, 730
BamHI	GGATCC	1 cut(s)	545
BbrPI	CACGTG	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	46
Bbv12I	GWGCWC	1 cut(s)	475
BbvCI	CCTCAGC	1 cut(s)	561
BbvI	GCAGC	2 cut(s)	323, 763
BccI	CCATC	2 cut(s)	739, 806
BciT130I	CCWGG	3 cut(s)	122, 543, 630
BciVI	GTATCC	1 cut(s)	776
BclI	TGATCA	1 cut(s)	369
BcnI	CCSGG	3 cut(s)	41, 164, 320
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	1 cut(s)	384
BfmI	CTRYAG	1 cut(s)	585
BfrI	CTTAAG	1 cut(s)	443
BfuAI	ACCTGC	1 cut(s)	604
BfuI	GTATCC	1 cut(s)	776
BisI	GCNGC	2 cut(s)	312, 752
BlsI	GCNGC	2 cut(s)	313, 753
Bme1390I	CCNGG	6 cut(s)	41, 122, 164, 320, 543, 630
Bme18I	GGWCC	1 cut(s)	340
BmeT110I	CYCGRG	1 cut(s)	746
BmgT120I	GGNCC	3 cut(s)	340, 396, 557
BmiI	GGNNCC	2 cut(s)	342, 547
BmrFI	CCNGG	6 cut(s)	41, 122, 164, 320, 543, 630
BmsI	GCATC	1 cut(s)	298
BpiI	GAAGAC	1 cut(s)	46
Bpu10I	CCTNAGC	1 cut(s)	561
BpuEI	CTTGAG	1 cut(s)	158
BpuMI	CCSGG	3 cut(s)	41, 164, 320
BsaAI	YACGTR	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	4 cut(s)	63, 120, 453, 778
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	2 cut(s)	587, 737
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	1 cut(s)	342
Bse21I	CCTNAGG	1 cut(s)	133
Bse3DI	GCAATG	1 cut(s)	220
BseBI	CCWGG	3 cut(s)	122, 543, 630
BseDI	CCNNGG	4 cut(s)	63, 120, 453, 778
BseGI	GGATG	2 cut(s)	313, 774
BseLI	CCNNNNNNNGG	2 cut(s)	587, 737
BseMI	GCAATG	1 cut(s)	220
BseMII	CTCAG	4 cut(s)	147, 282, 575, 840
BseNI	ACTGG	1 cut(s)	342
BseRI	GAGGAG	1 cut(s)	131
BseSI	GKGCMC	1 cut(s)	269
BseXI	GCAGC	2 cut(s)	323, 763
BsgI	GTGCAG	1 cut(s)	582
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	7 cut(s)	397, 541, 558, 628, 730, 741, 868
BsiHKAI	GWGCWC	1 cut(s)	475
BsiHKCI	CYCGRG	1 cut(s)	746
BsiSI	CCGG	4 cut(s)	41, 164, 186, 319
BslFI	GGGAC	1 cut(s)	829
BslI	CCNNNNNNNGG	2 cut(s)	587, 737
BsmAI	GTCTC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	829
BsmI	GAATGC	1 cut(s)	249
BsnI	GGCC	7 cut(s)	397, 541, 558, 628, 730, 741, 868
Bso31I	GGTCTC	1 cut(s)	143
BsoBI	CYCGRG	1 cut(s)	746
Bsp1286I	GDGCHC	2 cut(s)	269, 475
Bsp1407I	TGTACA	1 cut(s)	285
Bsp143I	GATC	4 cut(s)	369, 531, 545, 664
Bsp19I	CCATGG	1 cut(s)	63
BspACI	CCGC	1 cut(s)	297
BspANI	GGCC	7 cut(s)	397, 541, 558, 628, 730, 741, 868
BspCNI	CTCAG	4 cut(s)	146, 283, 574, 841
BspFNI	CGCG	1 cut(s)	102
BspHI	TCATGA	1 cut(s)	523
BspLI	GGNNCC	2 cut(s)	342, 547
BspMI	ACCTGC	1 cut(s)	604
BspPI	GGATC	3 cut(s)	540, 553, 659
BspQI	GCTCTTC	1 cut(s)	174
BspTI	CTTAAG	1 cut(s)	443
BspTNI	GGTCTC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	220
BsrFI	RCCGGY	1 cut(s)	185
BsrGI	TGTACA	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	342
BssAI	RCCGGY	1 cut(s)	185
BssECI	CCNNGG	4 cut(s)	63, 120, 453, 778
BssMI	GATC	4 cut(s)	369, 531, 545, 664
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	3 cut(s)	122, 543, 630
Bst4CI	ACNGT	2 cut(s)	392, 554
Bst6I	CTCTTC	1 cut(s)	174
BstAFI	CTTAAG	1 cut(s)	443
BstAUI	TGTACA	1 cut(s)	285
BstBAI	YACGTR	1 cut(s)	71
BstC8I	GCNNGC	6 cut(s)	181, 187, 316, 432, 739, 743
BstDEI	CTNAG	6 cut(s)	133, 199, 291, 467, 561, 849
BstDSI	CCRYGG	2 cut(s)	63, 778
BstF5I	GGATG	2 cut(s)	313, 774
BstFNI	CGCG	1 cut(s)	102
BstHHI	GCGC	3 cut(s)	104, 185, 488
BstKTI	GATC	4 cut(s)	372, 534, 548, 667
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	4 cut(s)	369, 531, 545, 664
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 751
BstNI	CCWGG	3 cut(s)	122, 543, 630
BstSCI	CCNGG	6 cut(s)	39, 120, 162, 318, 541, 628
BstSFI	CTRYAG	1 cut(s)	585
BstSLI	GKGCMC	1 cut(s)	269
BstUI	CGCG	1 cut(s)	102
BstV1I	GCAGC	2 cut(s)	323, 763
BstV2I	GAAGAC	1 cut(s)	46
BstX2I	RGATCY	1 cut(s)	545
BstXI	CCANNNNNNTGG	1 cut(s)	797
BstYI	RGATCY	1 cut(s)	545
Bsu36I	CCTNAGG	1 cut(s)	133
BsuI	GTATCC	1 cut(s)	776
BsuRI	GGCC	7 cut(s)	397, 541, 558, 628, 730, 741, 868
BtgI	CCRYGG	2 cut(s)	63, 778
BtsCI	GGATG	2 cut(s)	313, 774
BtsIMutI	CAGTG	1 cut(s)	288
BveI	ACCTGC	1 cut(s)	604
Cac8I	GCNNGC	6 cut(s)	181, 187, 316, 432, 739, 743
CciI	TCATGA	1 cut(s)	523
CfoI	GCGC	3 cut(s)	104, 185, 488
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	3 cut(s)	340, 396, 557
Csp6I	GTAC	2 cut(s)	286, 823
CviAII	CATG	2 cut(s)	64, 524
CviQI	GTAC	2 cut(s)	286, 823
DdeI	CTNAG	6 cut(s)	133, 199, 291, 467, 561, 849
DpnI	GATC	4 cut(s)	371, 533, 547, 666
DpnII	GATC	4 cut(s)	369, 531, 545, 664
DraIII	CACNNNGTG	1 cut(s)	294
DrdI	GACNNNNNNGTC	1 cut(s)	50
DseDI	GACNNNNNNGTC	1 cut(s)	50
EaeI	YGGCCR	3 cut(s)	539, 626, 728
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	63
Eco31I	GGTCTC	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	340
Eco72I	CACGTG	1 cut(s)	71
Eco81I	CCTNAGG	1 cut(s)	133
Eco88I	CYCGRG	1 cut(s)	746
EcoRII	CCWGG	3 cut(s)	120, 541, 628
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	2 cut(s)	67, 527
FaqI	GGGAC	1 cut(s)	829
FatI	CATG	2 cut(s)	63, 523
FbaI	TGATCA	1 cut(s)	369
Fnu4HI	GCNGC	2 cut(s)	312, 752
FokI	GGATG	2 cut(s)	320, 761
Fsp4HI	GCNGC	2 cut(s)	312, 752
FspBI	CTAG	1 cut(s)	384
GlaI	GCGC	3 cut(s)	103, 184, 487
GluI	GCNGC	2 cut(s)	312, 752
HaeIII	GGCC	7 cut(s)	397, 541, 558, 628, 730, 741, 868
HapII	CCGG	4 cut(s)	41, 164, 186, 319
HhaI	GCGC	3 cut(s)	104, 185, 488
Hin1II	CATG	2 cut(s)	67, 527
Hin6I	GCGC	3 cut(s)	102, 183, 486
HinP1I	GCGC	3 cut(s)	102, 183, 486
HinfI	GANTC	2 cut(s)	520, 801
HpaII	CCGG	4 cut(s)	41, 164, 186, 319
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	3 cut(s)	88, 806, 850
Hpy188III	TCNNGA	2 cut(s)	422, 524
Hpy8I	GTNNAC	1 cut(s)	288
Hpy99I	CGWCG	2 cut(s)	484, 713
HpyAV	CCTTC	2 cut(s)	200, 688
HpyCH4III	ACNGT	2 cut(s)	392, 554
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	8 cut(s)	220, 247, 311, 358, 430, 500, 599, 718
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 751
HpyF3I	CTNAG	6 cut(s)	133, 199, 291, 467, 561, 849
HpySE526I	ACGT	1 cut(s)	70
Hsp92II	CATG	2 cut(s)	67, 527
HspAI	GCGC	3 cut(s)	102, 183, 486
KroI	GCCGGC	1 cut(s)	185
KroNI	GCCGGC	1 cut(s)	187
Ksp22I	TGATCA	1 cut(s)	369
Kzo9I	GATC	4 cut(s)	369, 531, 545, 664
LguI	GCTCTTC	1 cut(s)	174
LmnI	GCTCC	1 cut(s)	89
Lsp1109I	GCAGC	2 cut(s)	323, 763
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	1 cut(s)	384
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	2 cut(s)	74, 457
MalI	GATC	4 cut(s)	371, 533, 547, 666
MboI	GATC	4 cut(s)	369, 531, 545, 664
MboII	GAAGA	3 cut(s)	46, 161, 215
MflI	RGATCY	1 cut(s)	545
MhlI	GDGCHC	2 cut(s)	269, 475
MlsI	TGGCCA	2 cut(s)	541, 730
MluCI	AATT	1 cut(s)	30
MluNI	TGGCCA	2 cut(s)	541, 730
MmeI	TCCRAC	2 cut(s)	605, 829
MnlI	CCTC	6 cut(s)	142, 152, 397, 448, 570, 797
Mox20I	TGGCCA	2 cut(s)	541, 730
MroNI	GCCGGC	1 cut(s)	185
MscI	TGGCCA	2 cut(s)	541, 730
MseI	TTAA	3 cut(s)	252, 444, 636
MslI	CAYNNNNRTG	2 cut(s)	225, 260
Msp20I	TGGCCA	2 cut(s)	541, 730
MspCI	CTTAAG	1 cut(s)	443
MspI	CCGG	4 cut(s)	41, 164, 186, 319
MspR9I	CCNGG	6 cut(s)	41, 122, 164, 320, 543, 630
Mva1269I	GAATGC	1 cut(s)	249
MvaI	CCWGG	3 cut(s)	122, 543, 630
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	2 cut(s)	320, 751
NaeI	GCCGGC	1 cut(s)	187
NciI	CCSGG	3 cut(s)	41, 164, 320
NcoI	CCATGG	1 cut(s)	63
NdeII	GATC	4 cut(s)	369, 531, 545, 664
NgoMIV	GCCGGC	1 cut(s)	185
NlaIII	CATG	2 cut(s)	67, 527
NlaIV	GGNNCC	2 cut(s)	342, 547
PagI	TCATGA	1 cut(s)	523
PciSI	GCTCTTC	1 cut(s)	174
PctI	GAATGC	1 cut(s)	249
PdiI	GCCGGC	1 cut(s)	187
PfeI	GAWTC	2 cut(s)	520, 801
PflFI	GACNNNGTC	1 cut(s)	47
PflMI	CCANNNNNTGG	1 cut(s)	737
PkrI	GCNGC	2 cut(s)	313, 753
PmaCI	CACGTG	1 cut(s)	71
PmlI	CACGTG	1 cut(s)	71
Ppu21I	YACGTR	1 cut(s)	71
PsiI	TTATAA	1 cut(s)	278
Psp6I	CCWGG	3 cut(s)	120, 541, 628
PspCI	CACGTG	1 cut(s)	71
PspGI	CCWGG	3 cut(s)	120, 541, 628
PspN4I	GGNNCC	2 cut(s)	342, 547
PspPI	GGNCC	3 cut(s)	340, 396, 557
PsuI	RGATCY	1 cut(s)	545
PsyI	GACNNNGTC	1 cut(s)	47
RsaI	GTAC	2 cut(s)	287, 824
RsaNI	GTAC	2 cut(s)	286, 823
RseI	CAYNNNNRTG	2 cut(s)	225, 260
SapI	GCTCTTC	1 cut(s)	174
SaqAI	TTAA	3 cut(s)	252, 444, 636
SatI	GCNGC	2 cut(s)	312, 752
Sau3AI	GATC	4 cut(s)	369, 531, 545, 664
Sau96I	GGNCC	3 cut(s)	340, 396, 557
ScrFI	CCNGG	6 cut(s)	41, 122, 164, 320, 543, 630
SduI	GDGCHC	2 cut(s)	269, 475
SfaNI	GCATC	1 cut(s)	298
SfcI	CTRYAG	1 cut(s)	585
SinI	GGWCC	1 cut(s)	340
SmiMI	CAYNNNNRTG	2 cut(s)	225, 260
SmlI	CTYRAG	2 cut(s)	173, 443
SmoI	CTYRAG	2 cut(s)	173, 443
Sse9I	AATT	1 cut(s)	30
SsiI	CCGC	1 cut(s)	297
SspI	AATATT	3 cut(s)	571, 725, 843
SspMI	CTAG	1 cut(s)	384
StyD4I	CCNGG	6 cut(s)	39, 120, 162, 318, 541, 628
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	2 cut(s)	392, 554
TaiI	ACGT	1 cut(s)	73
TaqI	TCGA	3 cut(s)	421, 534, 708
TasI	AATT	1 cut(s)	30
TatI	WGTACW	1 cut(s)	285
TfiI	GAWTC	2 cut(s)	520, 801
Tru1I	TTAA	3 cut(s)	252, 444, 636
Tru9I	TTAA	3 cut(s)	252, 444, 636
TscAI	CASTG	1 cut(s)	295
TseI	GCWGC	2 cut(s)	311, 751
TspDTI	ATGAA	3 cut(s)	512, 598, 699
TspGWI	ACGGA	1 cut(s)	795
TspRI	CASTG	1 cut(s)	295
Tth111I	GACNNNGTC	1 cut(s)	47
Van91I	CCANNNNNTGG	1 cut(s)	737
Vha464I	CTTAAG	1 cut(s)	443
VpaK11BI	GGWCC	1 cut(s)	340
XapI	RAATTY	1 cut(s)	30
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406
XspI	CTAG	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.