Rw4G031790

Belongs to the RNase T2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0019010
Physical Location & Seq
Reverse (-)
58963732 .. 58966512
2781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G031790.1

Sequence Viewer

Length: 489 bp
ATGCATTTTAACACAACCACAACAATTAGTGTGTCAAAGATAATCGACAATTTGGAAACAGATTGGCGGTCGCTGGCCTGCCCGAGCCACAACAGTACGCAGCTTTGGGCCGAAGAATGGAAAACACATGGCACTTGCTCACAGTCTGTCCTTCATCAGTACAAGTACTTCGCGAACGGTTCGACCCTCAAAGCCTCGGTAGACATCCTCAAAATGCTACAACTTGCTGTTATCATCAATATTATTCCAACTTGCAGAAATCCAAGCACGCAGATGGGAAAGTTTAACTTAAACAGTCTAATTATAAATAATCTGCAATCATCATTTGGCTTACGCAGTGTAGGGATAGAATGCAATGAAGATGCACATGGTAATAGCCAGTTTTACCAAGTTTATCTTTGTATAGACCCTTCTGGTTATTCTCTCACTGATTGTCCAGTGCTGCCAGATGCAAAATGTTCCGACAGTGTGGTCTTTCCTTCCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribonuclease_T2

Protein Analysis

162

Amino Acids

18.03

Weight (kDa)

5.88

Isoelectric Point (pI)

52.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribonuclease_T2 PF00445 11 - 145 7.3e-21 Ribonuclease T2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019010)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0439751
rosa_laevigata RLG00000006239
rosa_rugosa Rorug04G0321400
rosa_samantha Rh4AG372300 Rh4BG384600 Rh4CG399100 Rh4DG378800
rosa_wichuraiana Rw4G031790 Rw4G031810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 305
AasI GACNNNNNNGTC 1 cut(s) 470
AccI GTMKAC 1 cut(s) 201
AccII CGCG 1 cut(s) 173
AciI CCGC 1 cut(s) 67
AfaI GTAC 3 cut(s) 97, 161, 167
AfiI CCNNNNNNNGG 1 cut(s) 117
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
Ama87I CYCGRG 1 cut(s) 82
AoxI GGCC 2 cut(s) 75, 108
ApeKI GCWGC 2 cut(s) 100, 442
AspS9I GGNCC 1 cut(s) 108
AvaI CYCGRG 1 cut(s) 82
BarI GAAGNNNNNNTAC 4 cut(s) 152, 184, 394, 426
BbvI GCAGC 2 cut(s) 112, 429
BccI CCATC 1 cut(s) 268
BisI GCNGC 2 cut(s) 101, 443
BlsI GCNGC 2 cut(s) 102, 444
BmcAI AGTACT 1 cut(s) 167
BmeT110I CYCGRG 1 cut(s) 82
BmgT120I GGNCC 1 cut(s) 108
BmsI GCATC 2 cut(s) 352, 439
BsaJI CCNNGG 1 cut(s) 195
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse1I ACTGG 2 cut(s) 379, 437
Bse3DI GCAATG 1 cut(s) 361
BseDI CCNNGG 1 cut(s) 195
BseGI GGATG 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 117
BseMI GCAATG 1 cut(s) 361
BseNI ACTGG 2 cut(s) 379, 437
BseXI GCAGC 2 cut(s) 112, 429
Bsh1236I CGCG 1 cut(s) 173
Bsh1285I CGRYCG 1 cut(s) 71
BshFI GGCC 2 cut(s) 77, 110
BsiEI CGRYCG 1 cut(s) 71
BsiHKCI CYCGRG 1 cut(s) 82
BslI CCNNNNNNNGG 1 cut(s) 117
BsmI GAATGC 1 cut(s) 356
BsnI GGCC 2 cut(s) 77, 110
BsoBI CYCGRG 1 cut(s) 82
Bsp68I TCGCGA 1 cut(s) 173
BspACI CCGC 1 cut(s) 67
BspANI GGCC 2 cut(s) 77, 110
BspFNI CGCG 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 361
BsrI ACTGG 2 cut(s) 379, 437
BssECI CCNNGG 1 cut(s) 195
Bst4CI ACNGT 5 cut(s) 95, 144, 179, 296, 467
BstC8I GCNNGC 3 cut(s) 75, 79, 269
BstF5I GGATG 1 cut(s) 204
BstFNI CGCG 1 cut(s) 173
BstMCI CGRYCG 1 cut(s) 71
BstUI CGCG 1 cut(s) 173
BstV1I GCAGC 2 cut(s) 112, 429
BsuRI GGCC 2 cut(s) 77, 110
BtsCI GGATG 1 cut(s) 204
BtsI GCAGTG 1 cut(s) 343
BtsIMutI CAGTG 4 cut(s) 343, 426, 444, 472
BtuMI TCGCGA 1 cut(s) 173
Cac8I GCNNGC 3 cut(s) 75, 79, 269
Cfr13I GGNCC 1 cut(s) 108
Csp6I GTAC 3 cut(s) 96, 160, 166
CviAII CATG 2 cut(s) 128, 368
CviJI RGCY 7 cut(s) 77, 87, 103, 110, 194, 330, 378
CviKI_1 RGCY 7 cut(s) 77, 87, 103, 110, 194, 330, 378
CviQI GTAC 3 cut(s) 96, 160, 166
DrdI GACNNNNNNGTC 1 cut(s) 470
DseDI GACNNNNNNGTC 1 cut(s) 470
Eco88I CYCGRG 1 cut(s) 82
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 131, 371
FaiI YATR 4 cut(s) 129, 305, 369, 404
FalI AAGNNNNNCTT 4 cut(s) 272, 304, 381, 413
FatI CATG 2 cut(s) 127, 367
FblI GTMKAC 1 cut(s) 201
Fnu4HI GCNGC 2 cut(s) 101, 443
FokI GGATG 1 cut(s) 191
Fsp4HI GCNGC 2 cut(s) 101, 443
GluI GCNGC 2 cut(s) 101, 443
HaeIII GGCC 2 cut(s) 77, 110
Hin1II CATG 2 cut(s) 131, 371
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 1 cut(s) 463
Hpy188III TCNNGA 1 cut(s) 172
Hpy8I GTNNAC 1 cut(s) 202
HpyAV CCTTC 3 cut(s) 161, 420, 489
HpyCH4III ACNGT 5 cut(s) 95, 144, 179, 296, 467
HpyCH4V TGCA 6 cut(s) 4, 255, 316, 354, 365, 452
Hsp92II CATG 2 cut(s) 131, 371
LpnPI CCDG 6 cut(s) 59, 91, 392, 399, 450, 459
Lsp1109I GCAGC 2 cut(s) 112, 429
LweI GCATC 2 cut(s) 352, 439
MboII GAAGA 2 cut(s) 125, 371
MluCI AATT 3 cut(s) 24, 49, 300
MmeI TCCRAC 2 cut(s) 272, 486
MnlI CCTC 3 cut(s) 197, 205, 218
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 9, 285, 290
MslI CAYNNNNRTG 1 cut(s) 272
Mva1269I GAATGC 1 cut(s) 356
MvnI CGCG 1 cut(s) 173
NlaIII CATG 2 cut(s) 131, 371
NruI TCGCGA 1 cut(s) 173
NsiI ATGCAT 1 cut(s) 6
PctI GAATGC 1 cut(s) 356
PkrI GCNGC 2 cut(s) 102, 444
PsiI TTATAA 1 cut(s) 305
PspPI GGNCC 1 cut(s) 108
RruI TCGCGA 1 cut(s) 173
RsaI GTAC 3 cut(s) 97, 161, 167
RsaNI GTAC 3 cut(s) 96, 160, 166
RseI CAYNNNNRTG 1 cut(s) 272
SaqAI TTAA 3 cut(s) 9, 285, 290
SatI GCNGC 2 cut(s) 101, 443
Sau96I GGNCC 1 cut(s) 108
ScaI AGTACT 1 cut(s) 167
SetI ASST 1 cut(s) 105
SfaNI GCATC 2 cut(s) 352, 439
SmiMI CAYNNNNRTG 1 cut(s) 272
Sse9I AATT 3 cut(s) 24, 49, 300
SsiI CCGC 1 cut(s) 67
SspI AATATT 1 cut(s) 241
TaaI ACNGT 5 cut(s) 95, 144, 179, 296, 467
TaqI TCGA 2 cut(s) 45, 182
TasI AATT 3 cut(s) 24, 49, 300
TatI WGTACW 2 cut(s) 159, 165
Tru1I TTAA 3 cut(s) 9, 285, 290
Tru9I TTAA 3 cut(s) 9, 285, 290
TscAI CASTG 4 cut(s) 343, 433, 444, 472
TseI GCWGC 2 cut(s) 100, 442
TspDTI ATGAA 2 cut(s) 143, 372
TspRI CASTG 4 cut(s) 343, 433, 444, 472
XmiI GTMKAC 1 cut(s) 201
ZrmI AGTACT 1 cut(s) 167
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.