RLG00000007372

Glycine-rich cell wall structural protein-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
16196067 .. 16196903
837 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007372

Sequence Viewer

Length: 837 bp
ATGGGGAAGTTTTCTAAGTTTGTTGGAGTTTTTGCTTTGATGCTTGTAGTGGTGGTAGCCATAGCCGAGTGTAGGACGAGGCTTGAGAAAGAAACGTTTTCGGAAGGTGGTGTTGGAGGTGGCGCTGGAGGTGGTGCAGGTGGAGGCTTTGGCGGTGGTAAAGGTGGCGGCGTTGGAGTAGGAGGTGGTGCTGGAGGTGGAGTTGGTGGTGGAGGAGGAGCGGGTGGTGGTGCAGGTGGAGGCTTTGGGGGTGGTAAAGGTGGTGGTGCTGGGGGAGGAAGTGGTAAAGGTGGAGGTGTTGGTGGAGGCTCCGGAGGAGGAAGCGGTGCTGGTGGAGGCTTTGGGGGTGGTAAAGGTGGTGGTGCTGGGGGAGGAGTTGGTGGAGGAAGTGGTAAAGGGGGAGGTGTTGGTGGAGGAAGCGGTGCTGGTGGAGGCTTTGGGGGTGGTAAAGGTGGTGGTGCTGGGGGAGGAGTTGGTGGAGGAAGTGGTAAAGGGGGAGGTGTTGGTGGAGGCTCTGGAGGAGGAGTTGGTGGAGGAAGCGGTGCTGGTGGAGGCTTTGGGGGTGGTAAAGGAGGTGGTGTTGGGGGAGGAGTTGGTGGAGGAGCAGGTGGTGGAGGCGGTGTCGGTGGAGGCTCTGGAGGTGGTGTTGGGGGAGGAGCAGGTGGTGGAGGCGGTGTCGGTGGAGGTGCTGGCGGAGGCGCTGGGGGCGGTTTTGGAGGAGGAGCCGGTGGTGGTTTTGGAGGAGGAGCCGGTGGCGGTGCTGGTGGAGGTGCTGGTGGAGGATTCGGAGGAGGCGGTGGAGCTGGTGGTGGTGGGGGAATTGGTGGTGGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

279

Amino Acids

20.42

Weight (kDa)

10.25

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018484)

Species Orthologous Gene IDs
malus_domestica MD13G1153100.v1.1 MD16G1153500.v1.1
rosa_chinensis RchiOBHm_Chr4g0425401
rosa_laevigata RLG00000007372
rosa_roxburghii Rroxscaffold_5G00367360
rosa_rugosa Rorug04G0202600
rosa_samantha Rh4AG259800 Rh4BG265700 Rh4CG277000
rosa_wichuraiana Rw4G022490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 4 cut(s) 128, 224, 596, 650
Acc36I ACCTGC 4 cut(s) 128, 224, 596, 650
AccBSI CCGCTC 1 cut(s) 221
AccIII TCCGGA 1 cut(s) 311
AclI AACGTT 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 72
AjuI GAANNNNNNNTTGG 2 cut(s) 96, 128
AluBI AGCT 1 cut(s) 803
AluI AGCT 1 cut(s) 803
Aor13HI TCCGGA 1 cut(s) 311
AspLEI GCGC 2 cut(s) 125, 701
BfoI RGCGCY 2 cut(s) 126, 702
BfuAI ACCTGC 4 cut(s) 128, 224, 596, 650
BisI GCNGC 1 cut(s) 169
BlsI GCNGC 1 cut(s) 170
BmiI GGNNCC 3 cut(s) 310, 724, 748
BmsI GCATC 1 cut(s) 30
BpmI CTGGAG 4 cut(s) 147, 213, 537, 657
BpuEI CTTGAG 1 cut(s) 104
BsaWI WCCGGW 1 cut(s) 311
Bsc4I CCNNNNNNNGG 1 cut(s) 72
Bse118I RCCGGY 2 cut(s) 725, 749
BseAI TCCGGA 1 cut(s) 311
BseLI CCNNNNNNNGG 1 cut(s) 72
BseYI CCCAGC 4 cut(s) 269, 365, 461, 701
BsgI GTGCAG 2 cut(s) 156, 252
BsiSI CCGG 3 cut(s) 312, 726, 750
BslI CCNNNNNNNGG 1 cut(s) 72
Bsp13I TCCGGA 1 cut(s) 311
BspEI TCCGGA 1 cut(s) 311
BspLI GGNNCC 3 cut(s) 310, 724, 748
BspMI ACCTGC 4 cut(s) 128, 224, 596, 650
BsrBI CCGCTC 1 cut(s) 221
BsrFI RCCGGY 2 cut(s) 725, 749
BssAI RCCGGY 2 cut(s) 725, 749
BstC8I GCNNGC 1 cut(s) 691
BstDEI CTNAG 1 cut(s) 15
BstH2I RGCGCY 2 cut(s) 126, 702
BstHHI GCGC 2 cut(s) 125, 701
BstMWI GCNNNNNNNGC 1 cut(s) 705
BveI ACCTGC 4 cut(s) 128, 224, 596, 650
Cac8I GCNNGC 1 cut(s) 691
CfoI GCGC 2 cut(s) 125, 701
Cfr10I RCCGGY 2 cut(s) 725, 749
DdeI CTNAG 1 cut(s) 15
EciI GGCGGA 1 cut(s) 708
FaiI YATR 1 cut(s) 62
FauI CCCGC 1 cut(s) 214
Fnu4HI GCNGC 1 cut(s) 169
Fsp4HI GCNGC 1 cut(s) 169
GlaI GCGC 2 cut(s) 124, 700
GluI GCNGC 1 cut(s) 169
GsaI CCCAGC 4 cut(s) 273, 369, 465, 705
GsuI CTGGAG 4 cut(s) 147, 213, 537, 657
HaeII RGCGCY 2 cut(s) 126, 702
HapII CCGG 3 cut(s) 312, 726, 750
HhaI GCGC 2 cut(s) 125, 701
Hin6I GCGC 2 cut(s) 123, 699
HinP1I GCGC 2 cut(s) 123, 699
HinfI GANTC 1 cut(s) 783
HpaII CCGG 3 cut(s) 312, 726, 750
Hpy188I TCNGA 2 cut(s) 103, 788
Hpy188III TCNNGA 3 cut(s) 312, 516, 636
HpyAV CCTTC 1 cut(s) 98
HpyCH4IV ACGT 1 cut(s) 95
HpyCH4V TGCA 2 cut(s) 137, 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 705
HpyF3I CTNAG 1 cut(s) 15
HpySE526I ACGT 1 cut(s) 95
HspAI GCGC 2 cut(s) 123, 699
Kpn2I TCCGGA 1 cut(s) 311
LmnI GCTCC 7 cut(s) 218, 314, 602, 656, 722, 746, 800
LweI GCATC 1 cut(s) 30
MaeII ACGT 1 cut(s) 95
MbiI CCGCTC 1 cut(s) 221
MluCI AATT 1 cut(s) 819
MmeI TCCRAC 3 cut(s) 4, 94, 154
MroI TCCGGA 1 cut(s) 311
MseI TTAA 1 cut(s) 835
MspI CCGG 3 cut(s) 312, 726, 750
MwoI GCNNNNNNNGC 1 cut(s) 705
NlaIV GGNNCC 3 cut(s) 310, 724, 748
NmeAIII GCCGAG 1 cut(s) 91
PaqCI CACCTGC 4 cut(s) 128, 224, 596, 650
PfeI GAWTC 1 cut(s) 783
PkrI GCNGC 1 cut(s) 170
Psp1406I AACGTT 1 cut(s) 95
PspFI CCCAGC 4 cut(s) 269, 365, 461, 701
PspN4I GGNNCC 3 cut(s) 310, 724, 748
SaqAI TTAA 1 cut(s) 835
SatI GCNGC 1 cut(s) 169
SfaNI GCATC 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 1 cut(s) 819
TaiI ACGT 1 cut(s) 98
TasI AATT 1 cut(s) 819
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 1 cut(s) 783
Tru1I TTAA 1 cut(s) 835
Tru9I TTAA 1 cut(s) 835
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.