Rw4G022490

Glycine-rich cell wall structural protein-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
47871952 .. 47873252
1301 bp
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UTR
Exon/CDS
Intron
Rw4G022490.1

Sequence Viewer

Length: 990 bp
ATGGGGAAGTTTTCTAAGTTTGTTGGAGTTTTTGCTGTGATGCTTGTAGTGGTGGTAGCCATAGCCGAGTGTAGGAAGCTTGAGAAAGAAACGTTTTCGGAAGGTGGTGTTGGAGGTGGCGCTGGAGGTGGTGCAGGTGGAGGCTTTGGCGGTGGTAAAGGTGGCGGCGTTGGAGTAGGAGGTGGTGCTGGAGGTGGAGTTGGTGGTGGTGCAGGTGGAGGCTTTGGGGGTGGTAAAGGTGGTGGTGTTGGAGGAGGAAGCGGTGGCGGCGGAGGTGTTGGTGGAGGAAGCGGTGCTGGTGGAGGCTTTGGGGGTGGTAAAGGTGGTGGTGCTGGGGGAGGAGTTGGTGGAGGCTCTGGAGGAGGTGTTGGTGGAGGCTTTGGGGGTGGTAAAGGTGGTGGTGCTGGGGGAGGAGTTGGTGGAGGAAGTGGTAAAGGTGGAGGTGTTGGTGGAGGCTCCGGAGGAGGAGTTGGTGGAGGAAGCGGGGCTGGTGGAGGCTTTGGGGGTGGTAAAGGTGGTGGTGCTGGGGGAGGAGTTGGTGGAGGAAGTGGTAAAGGTGGAGGTTCTGGAGGAGGAGTTGGTGGAGGAAGCGGTGCTGGGGGAGGAGTTGGTGGAGGAAGTGGTAAAGGTGGAGGAAGCGGTGCTGGTGGAGGCTTCGGAGGTGGTAAAGGTGGTGGTGTTGGGGGAGGAGTTGGTGGAGGAAGCGGTGGTGGCGGAGGTGTTGGTGGAGGCTCTGGAGGTGGTGTTGGGGGAGGAGCGGGTGGTGGAGGCGGTGTCGGTGGAGGTGCTGGCGGAGGCGCTGGGGGCGGTTTTGGTGGAGGAGCCGGTGGCGGTATTGGGGGAGGAGCGGGTGGTGGAGGTGGTGTCGGTGGAGGTGCTGGGGGCGGTTTTGGAGGAGGAGCCGGTGGTGGTGCTGGTGGAGGTGCTGGTGGAGGATTCGGAGGAGGCGGTGGAGCTGGTGGTGGTGGGGGAATTGGTGGTGGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

329

Amino Acids

23.8

Weight (kDa)

10.21

Isoelectric Point (pI)

50.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018484)

Species Orthologous Gene IDs
malus_domestica MD13G1153100.v1.1 MD16G1153500.v1.1
rosa_chinensis RchiOBHm_Chr4g0425401
rosa_laevigata RLG00000007372
rosa_roxburghii Rroxscaffold_5G00367360
rosa_rugosa Rorug04G0202600
rosa_samantha Rh4AG259800 Rh4BG265700 Rh4CG277000
rosa_wichuraiana Rw4G022490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 125, 203
Acc36I ACCTGC 2 cut(s) 125, 203
AccBSI CCGCTC 2 cut(s) 758, 848
AccIII TCCGGA 1 cut(s) 458
AclI AACGTT 1 cut(s) 92
AfiI CCNNNNNNNGG 1 cut(s) 72
AjuI GAANNNNNNNTTGG 2 cut(s) 93, 125
AluBI AGCT 2 cut(s) 79, 956
AluI AGCT 2 cut(s) 79, 956
Aor13HI TCCGGA 1 cut(s) 458
AspLEI GCGC 2 cut(s) 122, 800
BfoI RGCGCY 2 cut(s) 123, 801
BfuAI ACCTGC 2 cut(s) 125, 203
BisI GCNGC 2 cut(s) 166, 268
BlsI GCNGC 2 cut(s) 167, 269
BmiI GGNNCC 3 cut(s) 457, 823, 901
BmsI GCATC 1 cut(s) 30
BpmI CTGGAG 5 cut(s) 144, 210, 378, 588, 756
BpuEI CTTGAG 1 cut(s) 101
BsaWI WCCGGW 1 cut(s) 458
Bsc4I CCNNNNNNNGG 1 cut(s) 72
Bse118I RCCGGY 2 cut(s) 824, 902
BseAI TCCGGA 1 cut(s) 458
BseLI CCNNNNNNNGG 1 cut(s) 72
BseYI CCCAGC 6 cut(s) 332, 404, 524, 596, 800, 878
BsgI GTGCAG 2 cut(s) 153, 231
BsiSI CCGG 3 cut(s) 459, 825, 903
BslI CCNNNNNNNGG 1 cut(s) 72
Bsp13I TCCGGA 1 cut(s) 458
BspEI TCCGGA 1 cut(s) 458
BspLI GGNNCC 3 cut(s) 457, 823, 901
BspMI ACCTGC 2 cut(s) 125, 203
BsrBI CCGCTC 2 cut(s) 758, 848
BsrFI RCCGGY 2 cut(s) 824, 902
BssAI RCCGGY 2 cut(s) 824, 902
BstC8I GCNNGC 1 cut(s) 790
BstDEI CTNAG 1 cut(s) 15
BstH2I RGCGCY 2 cut(s) 123, 801
BstHHI GCGC 2 cut(s) 122, 800
BstMWI GCNNNNNNNGC 3 cut(s) 267, 711, 804
BveI ACCTGC 2 cut(s) 125, 203
Cac8I GCNNGC 1 cut(s) 790
CfoI GCGC 2 cut(s) 122, 800
Cfr10I RCCGGY 2 cut(s) 824, 902
DdeI CTNAG 1 cut(s) 15
EciI GGCGGA 3 cut(s) 285, 729, 807
FaiI YATR 1 cut(s) 62
FauI CCCGC 3 cut(s) 476, 751, 841
Fnu4HI GCNGC 2 cut(s) 166, 268
Fsp4HI GCNGC 2 cut(s) 166, 268
GlaI GCGC 2 cut(s) 121, 799
GluI GCNGC 2 cut(s) 166, 268
GsaI CCCAGC 6 cut(s) 336, 408, 528, 600, 804, 882
GsuI CTGGAG 5 cut(s) 144, 210, 378, 588, 756
HaeII RGCGCY 2 cut(s) 123, 801
HapII CCGG 3 cut(s) 459, 825, 903
HhaI GCGC 2 cut(s) 122, 800
Hin6I GCGC 2 cut(s) 120, 798
HinP1I GCGC 2 cut(s) 120, 798
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 1 cut(s) 936
HpaII CCGG 3 cut(s) 459, 825, 903
Hpy188I TCNGA 3 cut(s) 100, 659, 941
Hpy188III TCNNGA 4 cut(s) 357, 459, 567, 735
HpyAV CCTTC 1 cut(s) 95
HpyCH4IV ACGT 1 cut(s) 92
HpyCH4V TGCA 2 cut(s) 134, 212
HpyF10VI GCNNNNNNNGC 3 cut(s) 267, 711, 804
HpyF3I CTNAG 1 cut(s) 15
HpySE526I ACGT 1 cut(s) 92
HspAI GCGC 2 cut(s) 120, 798
Kpn2I TCCGGA 1 cut(s) 458
LmnI GCTCC 6 cut(s) 461, 755, 821, 845, 899, 953
LweI GCATC 1 cut(s) 30
MaeII ACGT 1 cut(s) 92
MbiI CCGCTC 2 cut(s) 758, 848
MluCI AATT 1 cut(s) 972
MmeI TCCRAC 4 cut(s) 4, 91, 151, 229
MroI TCCGGA 1 cut(s) 458
MseI TTAA 1 cut(s) 988
MspI CCGG 3 cut(s) 459, 825, 903
MwoI GCNNNNNNNGC 3 cut(s) 267, 711, 804
NlaIV GGNNCC 3 cut(s) 457, 823, 901
NmeAIII GCCGAG 1 cut(s) 91
PaqCI CACCTGC 2 cut(s) 125, 203
PfeI GAWTC 1 cut(s) 936
PkrI GCNGC 2 cut(s) 167, 269
Psp1406I AACGTT 1 cut(s) 92
PspFI CCCAGC 6 cut(s) 332, 404, 524, 596, 800, 878
PspN4I GGNNCC 3 cut(s) 457, 823, 901
SaqAI TTAA 1 cut(s) 988
SatI GCNGC 2 cut(s) 166, 268
SfaNI GCATC 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
Sse9I AATT 1 cut(s) 972
TaiI ACGT 1 cut(s) 95
TasI AATT 1 cut(s) 972
TauI GCSGC 2 cut(s) 168, 270
TfiI GAWTC 1 cut(s) 936
Tru1I TTAA 1 cut(s) 988
Tru9I TTAA 1 cut(s) 988
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.