Rorug04G0202600

Glycine-rich cell wall structural protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0018484
Physical Location & Seq
Reverse (-)
35173540 .. 35173938
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0202600.1

Sequence Viewer

Length: 399 bp
ATGCAGCCTATAACATGGTGGGCTGTCCATGGAGCTTCGGCACCATCTCTCCAAGCCATAGCCTTCAAGGTTCTAGGTCAACCTTGTTCTTCTTCATGTTGTGAAAGAAATTGGAGTACTTACAATTTCATTCACTCTGTGAGGAGGAACAAGATAACACCACAAAGAGCGGAAGATTTGGTGTTTGTGCATACCAATCTTCGCCTTTTAGCTAGAAGAAGCCCAAGTTATAATGAGAGTGCAACTCAAATGTGGGATGTTGGAGGTGATGAGTTTGATTCTTTGGAAGAGACTAATGTTGGAAGGCTTGAGATTGCTAACCTTTCACTTGATGAACCACAATTAGAGGGGGTTTTGTTTGAAGATGAAGACCTTGAGGATGTTGTCCAAGTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.95

Weight (kDa)

4.57

Isoelectric Point (pI)

50.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 1 - 67 2.1e-12 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018484)

Species Orthologous Gene IDs
malus_domestica MD13G1153100.v1.1 MD16G1153500.v1.1
rosa_chinensis RchiOBHm_Chr4g0425401
rosa_laevigata RLG00000007372
rosa_roxburghii Rroxscaffold_5G00367360
rosa_rugosa Rorug04G0202600
rosa_samantha Rh4AG259800 Rh4BG265700 Rh4CG277000
rosa_wichuraiana Rw4G022490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 231
AccB1I GGYRCC 1 cut(s) 40
AccBSI CCGCTC 1 cut(s) 170
AciI CCGC 1 cut(s) 170
AdeI CACNNNGTG 1 cut(s) 139
AfaI GTAC 1 cut(s) 118
AgsI TTSAA 3 cut(s) 67, 362, 395
AluBI AGCT 2 cut(s) 35, 212
AluI AGCT 2 cut(s) 35, 212
Alw26I GTCTC 1 cut(s) 284
ApeKI GCWGC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 278
BanI GGYRCC 1 cut(s) 40
BbsI GAAGAC 1 cut(s) 375
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 52
BcoDI GTCTC 1 cut(s) 284
BfaI CTAG 2 cut(s) 74, 213
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
BmcAI AGTACT 1 cut(s) 118
BmiI GGNNCC 1 cut(s) 42
BpiI GAAGAC 1 cut(s) 375
BplI GAGNNNNNCTC 2 cut(s) 229, 261
BpuEI CTTGAG 2 cut(s) 329, 395
BsaJI CCNNGG 1 cut(s) 28
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
BseDI CCNNGG 1 cut(s) 28
BseGI GGATG 2 cut(s) 262, 385
BseRI GAGGAG 1 cut(s) 157
BseXI GCAGC 1 cut(s) 16
BshNI GGYRCC 1 cut(s) 40
BsmAI GTCTC 1 cut(s) 284
Bsp19I CCATGG 1 cut(s) 28
BspACI CCGC 1 cut(s) 170
BspLI GGNNCC 1 cut(s) 42
BspT107I GGYRCC 1 cut(s) 40
BsrBI CCGCTC 1 cut(s) 170
BssECI CCNNGG 1 cut(s) 28
BssT1I CCWWGG 1 cut(s) 28
Bst6I CTCTTC 1 cut(s) 282
BstDSI CCRYGG 1 cut(s) 28
BstF5I GGATG 2 cut(s) 262, 385
BstMAI GTCTC 1 cut(s) 284
BstV1I GCAGC 1 cut(s) 16
BstV2I GAAGAC 1 cut(s) 375
BtgI CCRYGG 1 cut(s) 28
BtsCI GGATG 2 cut(s) 262, 385
Csp6I GTAC 1 cut(s) 117
CviAII CATG 3 cut(s) 15, 29, 96
CviJI RGCY 8 cut(s) 7, 23, 35, 56, 62, 212, 222, 307
CviKI_1 RGCY 8 cut(s) 7, 23, 35, 56, 62, 212, 222, 307
CviQI GTAC 1 cut(s) 117
DraIII CACNNNGTG 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
Eco130I CCWWGG 1 cut(s) 28
EcoT14I CCWWGG 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 28
FaeI CATG 3 cut(s) 18, 32, 99
FaiI YATR 7 cut(s) 11, 16, 30, 59, 97, 192, 231
FatI CATG 3 cut(s) 14, 28, 95
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 2 cut(s) 269, 392
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 2 cut(s) 74, 213
GluI GCNGC 1 cut(s) 5
Hin1II CATG 3 cut(s) 18, 32, 99
HincII GTYRAC 1 cut(s) 80
HindII GTYRAC 1 cut(s) 80
HinfI GANTC 1 cut(s) 278
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 1 cut(s) 80
Hpy8I GTNNAC 1 cut(s) 80
HpyAV CCTTC 2 cut(s) 73, 297
HpyCH4V TGCA 3 cut(s) 4, 190, 242
Hsp92II CATG 3 cut(s) 18, 32, 99
LmnI GCTCC 1 cut(s) 32
Lsp1109I GCAGC 1 cut(s) 16
MaeI CTAG 2 cut(s) 74, 213
MbiI CCGCTC 1 cut(s) 170
MboII GAAGA 8 cut(s) 81, 84, 185, 191, 228, 299, 374, 380
MluCI AATT 3 cut(s) 109, 124, 341
MmeI TCCRAC 2 cut(s) 241, 280
MnlI CCTC 5 cut(s) 135, 138, 257, 340, 370
NcoI CCATGG 1 cut(s) 28
NlaIII CATG 3 cut(s) 18, 32, 99
NlaIV GGNNCC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 278
PkrI GCNGC 1 cut(s) 6
PsiI TTATAA 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 42
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
SatI GCNGC 1 cut(s) 5
ScaI AGTACT 1 cut(s) 118
SetI ASST 8 cut(s) 37, 72, 79, 85, 214, 268, 324, 375
SmlI CTYRAG 2 cut(s) 308, 374
SmoI CTYRAG 2 cut(s) 308, 374
Sse9I AATT 3 cut(s) 109, 124, 341
SsiI CCGC 1 cut(s) 170
SspMI CTAG 2 cut(s) 74, 213
StyI CCWWGG 1 cut(s) 28
TasI AATT 3 cut(s) 109, 124, 341
TatI WGTACW 1 cut(s) 116
TfiI GAWTC 1 cut(s) 278
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 4 cut(s) 84, 118, 348, 381
XspI CTAG 2 cut(s) 74, 213
ZrmI AGTACT 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.