RLG00000007759

exocyst complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0020610
Physical Location & Seq
Forward (+)
20717728 .. 20720147
2420 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007759

Sequence Viewer

Length: 612 bp
ATGCTTGACTTGTTTCATATCTGTTTGGATTCATTTTGGGGAGGAGTTTATGCTCTCGAGGTTGCTGGCTTGGATTTCAAGGAGAGGTGGAGAGGTTGTGTGTTCCGTCAATGTGGGAATTCCATGGGGAGCTCGAGTTTTGTCAATTGGGCGGCTCAGATCTTGATGGATCCGGTTTTGGCGTGTGTGCAACTTTCTTCAACGTGGGCTGCGATGGTGCTTCATTGGGTTGACCACGGCGGATGCTATGGCGGCGTTGGTGCAAGTTTATGGGGTCTGTCATCTTCATTGAAGCATTGGCTTGGGATTCTTGTGGTGGACTCGACTCCCTCGCCAATCCCAGCTCCTCCTCCTCCAACCATCACTTCTCCGTTGACCACAGAAACGACCACAGCTCCGAATTCGATCGAAGTCGACGACTTCTCCGCAGATGATGACTGCGATTTGCCGAACACCTCGAACTACAGGTCCACCAGTAGCATCCGGAAGCTCGATCTCATCCCCTCCGATGTAGTTATTGACCTCGGCAACATCGCCGACCGGATGATCACCGAGATTGGAGAAGCTTCTCGGGACGCCTTGCCGGAAGCCGAGATTGGCGTCTTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006887 GO:0008150 GO:0009987 GO:0016192 GO:0032940 GO:0046903 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
ko04910 map04910
Pfam Domains
Protein Families
Exo70

Protein Analysis

204

Amino Acids

21.87

Weight (kDa)

4.28

Isoelectric Point (pI)

44.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020610)

Species Orthologous Gene IDs
rosa_laevigata RLG00000003429 RLG00000007759
rosa_multiflora Rmu_sc0000210.1_g000013
rosa_samantha Rh2DG285300 Rh7AG216400 Rh7CG229900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 414
AccIII TCCGGA 1 cut(s) 483
AciI CCGC 4 cut(s) 152, 240, 252, 426
AclWI GGATC 2 cut(s) 164, 177
AcsI RAATTY 2 cut(s) 118, 400
AcyI GRCGYC 2 cut(s) 576, 600
AgsI TTSAA 3 cut(s) 79, 201, 292
AjuI GAANNNNNNNTTGG 4 cut(s) 349, 381, 579, 611
AloI GAACNNNNNNTCC 2 cut(s) 452, 484
AluBI AGCT 5 cut(s) 132, 344, 395, 490, 566
AluI AGCT 5 cut(s) 132, 344, 395, 490, 566
Alw21I GWGCWC 1 cut(s) 134
AlwI GGATC 2 cut(s) 164, 177
Ama87I CYCGRG 3 cut(s) 56, 133, 570
Aor13HI TCCGGA 1 cut(s) 483
ApeKI GCWGC 1 cut(s) 209
ApoI RAATTY 2 cut(s) 118, 400
ArsI GACNNNNNNTTYG 2 cut(s) 452, 484
AspS9I GGNCC 1 cut(s) 468
AsuHPI GGTGA 1 cut(s) 541
AvaI CYCGRG 3 cut(s) 56, 133, 570
AvaII GGWCC 1 cut(s) 468
BamHI GGATCC 1 cut(s) 169
BanII GRGCYC 1 cut(s) 134
Bbv12I GWGCWC 1 cut(s) 134
BbvI GCAGC 1 cut(s) 196
BccI CCATC 3 cut(s) 160, 208, 368
BceAI ACGGC 1 cut(s) 253
BclI TGATCA 1 cut(s) 546
BfmI CTRYAG 1 cut(s) 463
BglII AGATCT 1 cut(s) 159
BisI GCNGC 3 cut(s) 153, 210, 253
BlsI GCNGC 3 cut(s) 154, 211, 254
Bme18I GGWCC 1 cut(s) 468
BmeT110I CYCGRG 3 cut(s) 56, 133, 570
BmgT120I GGNCC 1 cut(s) 468
BmiI GGNNCC 1 cut(s) 171
BmsI GCATC 2 cut(s) 233, 489
BsaHI GRCGYC 2 cut(s) 576, 600
BsaJI CCNNGG 3 cut(s) 123, 235, 523
BsaWI WCCGGW 3 cut(s) 172, 483, 540
BsaXI ACNNNNNCTCC 8 cut(s) 82, 112, 121, 151, 379, 407, 409, 437
Bse1I ACTGG 1 cut(s) 474
BseAI TCCGGA 1 cut(s) 483
BseDI CCNNGG 3 cut(s) 123, 235, 523
BseGI GGATG 4 cut(s) 248, 480, 498, 549
BseMII CTCAG 1 cut(s) 170
BseNI ACTGG 1 cut(s) 474
BseRI GAGGAG 4 cut(s) 57, 336, 339, 342
BseXI GCAGC 1 cut(s) 196
BseYI CCCAGC 1 cut(s) 340
Bsh1285I CGRYCG 2 cut(s) 408, 541
BsiEI CGRYCG 2 cut(s) 408, 541
BsiHKAI GWGCWC 1 cut(s) 134
BsiHKCI CYCGRG 3 cut(s) 56, 133, 570
BsiSI CCGG 4 cut(s) 173, 484, 541, 584
BslFI GGGAC 1 cut(s) 587
BsmFI GGGAC 1 cut(s) 587
BsoBI CYCGRG 3 cut(s) 56, 133, 570
Bsp1286I GDGCHC 1 cut(s) 134
Bsp13I TCCGGA 1 cut(s) 483
Bsp143I GATC 5 cut(s) 159, 169, 405, 493, 546
Bsp19I CCATGG 1 cut(s) 123
BspACI CCGC 4 cut(s) 152, 240, 252, 426
BspCNI CTCAG 1 cut(s) 169
BspEI TCCGGA 1 cut(s) 483
BspLI GGNNCC 1 cut(s) 171
BspPI GGATC 2 cut(s) 164, 177
BsrI ACTGG 1 cut(s) 474
BssECI CCNNGG 3 cut(s) 123, 235, 523
BssMI GATC 5 cut(s) 159, 169, 405, 493, 546
BssNI GRCGYC 2 cut(s) 576, 600
BssT1I CCWWGG 1 cut(s) 123
BstACI GRCGYC 2 cut(s) 576, 600
BstC8I GCNNGC 1 cut(s) 67
BstDEI CTNAG 1 cut(s) 156
BstDSI CCRYGG 2 cut(s) 123, 235
BstF5I GGATG 4 cut(s) 248, 480, 498, 549
BstKTI GATC 5 cut(s) 162, 172, 408, 496, 549
BstMBI GATC 5 cut(s) 159, 169, 405, 493, 546
BstMCI CGRYCG 2 cut(s) 408, 541
BstMWI GCNNNNNNNGC 1 cut(s) 252
BstSFI CTRYAG 1 cut(s) 463
BstV1I GCAGC 1 cut(s) 196
BstX2I RGATCY 2 cut(s) 159, 169
BstYI RGATCY 2 cut(s) 159, 169
BtgI CCRYGG 2 cut(s) 123, 235
BtgZI GCGATG 2 cut(s) 227, 517
BtsCI GGATG 4 cut(s) 248, 480, 498, 549
Cac8I GCNNGC 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 468
CseI GACGC 2 cut(s) 584, 589
CviAII CATG 1 cut(s) 124
DdeI CTNAG 1 cut(s) 156
DpnI GATC 5 cut(s) 161, 171, 407, 495, 548
DpnII GATC 5 cut(s) 159, 169, 405, 493, 546
EciI GGCGGA 1 cut(s) 255
Ecl136II GAGCTC 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 123
Eco24I GRGCYC 1 cut(s) 134
Eco47I GGWCC 1 cut(s) 468
Eco53kI GAGCTC 1 cut(s) 132
Eco88I CYCGRG 3 cut(s) 56, 133, 570
EcoICRI GAGCTC 1 cut(s) 132
EcoRI GAATTC 2 cut(s) 118, 400
EcoT14I CCWWGG 1 cut(s) 123
EcoT38I GRGCYC 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 1 cut(s) 127
FaiI YATR 5 cut(s) 18, 51, 125, 249, 271
FaqI GGGAC 1 cut(s) 587
FatI CATG 1 cut(s) 123
FbaI TGATCA 1 cut(s) 546
FblI GTMKAC 1 cut(s) 414
Fnu4HI GCNGC 3 cut(s) 153, 210, 253
FokI GGATG 4 cut(s) 255, 467, 485, 556
FriOI GRGCYC 1 cut(s) 134
Fsp4HI GCNGC 3 cut(s) 153, 210, 253
GluI GCNGC 3 cut(s) 153, 210, 253
GsaI CCCAGC 1 cut(s) 344
HapII CCGG 4 cut(s) 173, 484, 541, 584
HgaI GACGC 2 cut(s) 584, 589
Hin1I GRCGYC 2 cut(s) 576, 600
Hin1II CATG 1 cut(s) 127
HincII GTYRAC 3 cut(s) 232, 375, 415
HindII GTYRAC 3 cut(s) 232, 375, 415
HindIII AAGCTT 1 cut(s) 564
HinfI GANTC 4 cut(s) 29, 307, 320, 325
HpaII CCGG 4 cut(s) 173, 484, 541, 584
HphI GGTGA 1 cut(s) 541
Hpy166II GTNNAC 5 cut(s) 232, 319, 375, 415, 471
Hpy188I TCNGA 3 cut(s) 159, 399, 508
Hpy188III TCNNGA 4 cut(s) 56, 163, 484, 572
Hpy8I GTNNAC 5 cut(s) 232, 319, 375, 415, 471
Hpy99I CGWCG 1 cut(s) 419
HpyCH4IV ACGT 1 cut(s) 203
HpyCH4V TGCA 2 cut(s) 190, 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 252
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 1 cut(s) 203
Hsp92I GRCGYC 2 cut(s) 576, 600
Hsp92II CATG 1 cut(s) 127
Kpn2I TCCGGA 1 cut(s) 483
Ksp22I TGATCA 1 cut(s) 546
Kzo9I GATC 5 cut(s) 159, 169, 405, 493, 546
LmnI GCTCC 3 cut(s) 129, 349, 400
LpnPI CCDG 8 cut(s) 51, 186, 354, 451, 487, 497, 554, 597
Lsp1109I GCAGC 1 cut(s) 196
LweI GCATC 2 cut(s) 233, 489
MaeII ACGT 1 cut(s) 203
MalI GATC 5 cut(s) 161, 171, 407, 495, 548
MboI GATC 5 cut(s) 159, 169, 405, 493, 546
MboII GAAGA 2 cut(s) 189, 276
MfeI CAATTG 1 cut(s) 145
MflI RGATCY 2 cut(s) 159, 169
MhlI GDGCHC 1 cut(s) 134
MluCI AATT 3 cut(s) 118, 145, 400
MlyI GAGTC 2 cut(s) 314, 319
MmeI TCCRAC 1 cut(s) 380
MroI TCCGGA 1 cut(s) 483
MspI CCGG 4 cut(s) 173, 484, 541, 584
MunI CAATTG 1 cut(s) 145
MwoI GCNNNNNNNGC 1 cut(s) 252
NcoI CCATGG 1 cut(s) 123
NdeII GATC 5 cut(s) 159, 169, 405, 493, 546
NlaIII CATG 1 cut(s) 127
NlaIV GGNNCC 1 cut(s) 171
NmeAIII GCCGAG 1 cut(s) 504
PaeR7I CTCGAG 2 cut(s) 56, 133
PcsI WCGNNNNNNNCGW 2 cut(s) 209, 414
PfeI GAWTC 2 cut(s) 29, 307
PkrI GCNGC 3 cut(s) 154, 211, 254
Ple19I CGATCG 1 cut(s) 408
PleI GAGTC 2 cut(s) 314, 319
PpsI GAGTC 2 cut(s) 314, 319
Psp124BI GAGCTC 1 cut(s) 134
PspFI CCCAGC 1 cut(s) 340
PspN4I GGNNCC 1 cut(s) 171
PspPI GGNCC 1 cut(s) 468
PspXI VCTCGAGB 1 cut(s) 133
PsuI RGATCY 2 cut(s) 159, 169
PvuI CGATCG 1 cut(s) 408
SacI GAGCTC 1 cut(s) 134
SalI GTCGAC 1 cut(s) 413
SatI GCNGC 3 cut(s) 153, 210, 253
Sau3AI GATC 5 cut(s) 159, 169, 405, 493, 546
Sau96I GGNCC 1 cut(s) 468
SchI GAGTC 2 cut(s) 314, 319
SduI GDGCHC 1 cut(s) 134
SfaNI GCATC 2 cut(s) 233, 489
SfcI CTRYAG 1 cut(s) 463
Sfr274I CTCGAG 2 cut(s) 56, 133
SinI GGWCC 1 cut(s) 468
SlaI CTCGAG 2 cut(s) 56, 133
SmlI CTYRAG 2 cut(s) 56, 133
SmoI CTYRAG 2 cut(s) 56, 133
Sse9I AATT 3 cut(s) 118, 145, 400
SsiI CCGC 4 cut(s) 152, 240, 252, 426
SstI GAGCTC 1 cut(s) 134
StyI CCWWGG 1 cut(s) 123
TaiI ACGT 1 cut(s) 206
TaqI TCGA 8 cut(s) 57, 134, 323, 404, 408, 414, 458, 492
TasI AATT 3 cut(s) 118, 145, 400
TauI GCSGC 2 cut(s) 155, 255
TfiI GAWTC 2 cut(s) 29, 307
TseI GCWGC 1 cut(s) 209
TspDTI ATGAA 4 cut(s) 5, 21, 212, 276
TspGWI ACGGA 2 cut(s) 95, 360
VpaK11BI GGWCC 1 cut(s) 468
XapI RAATTY 2 cut(s) 118, 400
XhoI CTCGAG 2 cut(s) 56, 133
XmiI GTMKAC 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.