Rh7AG216400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Forward (+)
20151198 .. 20151469
272 bp
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UTR
Exon/CDS
Intron
Rh7AG216400.1

Sequence Viewer

Length: 225 bp
ATGCTTGGCTCGTTTTGGATCTGTTTGGATTCGTTTTGGGGAGGAGTTCATGAACTCGGGGCTGCTCGCTTGGATTTCAAAGGGAGGTGGAGAGGCTGTGTGTTCCGTCAGGGCGAGATTCCATGGGGAGCGGCTTTCTTCAACTTGGGCGGCGATGGTGCTTCGTTGGCGTGTGGGAGTCAGACTGGGTCGATGGGGGCGGCTTCTACGGTGGCGTTGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

7.76

Weight (kDa)

6.51

Isoelectric Point (pI)

23.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020610)

Species Orthologous Gene IDs
rosa_laevigata RLG00000003429 RLG00000007759
rosa_multiflora Rmu_sc0000210.1_g000013
rosa_samantha Rh2DG285300 Rh7AG216400 Rh7CG229900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 131
AciI CCGC 3 cut(s) 131, 150, 200
AclWI GGATC 1 cut(s) 26
AgsI TTSAA 2 cut(s) 79, 142
AlwI GGATC 1 cut(s) 26
Ama87I CYCGRG 1 cut(s) 56
ApeKI GCWGC 1 cut(s) 62
AvaI CYCGRG 1 cut(s) 56
BbvI GCAGC 1 cut(s) 49
BccI CCATC 2 cut(s) 149, 187
BisI GCNGC 4 cut(s) 63, 132, 151, 201
BlsI GCNGC 4 cut(s) 64, 133, 152, 202
BmeT110I CYCGRG 1 cut(s) 56
BmrI ACTGGG 1 cut(s) 195
BmuI ACTGGG 1 cut(s) 195
BsaJI CCNNGG 1 cut(s) 122
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
Bse1I ACTGG 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 122
BseNI ACTGG 1 cut(s) 190
BseRI GAGGAG 1 cut(s) 57
BseXI GCAGC 1 cut(s) 49
BsiHKCI CYCGRG 1 cut(s) 56
BsoBI CYCGRG 1 cut(s) 56
Bsp143I GATC 1 cut(s) 18
Bsp19I CCATGG 1 cut(s) 122
BspACI CCGC 3 cut(s) 131, 150, 200
BspHI TCATGA 1 cut(s) 49
BspPI GGATC 1 cut(s) 26
BsrBI CCGCTC 1 cut(s) 131
BsrI ACTGG 1 cut(s) 190
BssECI CCNNGG 1 cut(s) 122
BssMI GATC 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 122
Bst4CI ACNGT 1 cut(s) 211
BstC8I GCNNGC 1 cut(s) 67
BstDSI CCRYGG 1 cut(s) 122
BstKTI GATC 1 cut(s) 21
BstMBI GATC 1 cut(s) 18
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstV1I GCAGC 1 cut(s) 49
BstX2I RGATCY 1 cut(s) 18
BstYI RGATCY 1 cut(s) 18
BtgI CCRYGG 1 cut(s) 122
BtgZI GCGATG 1 cut(s) 168
Cac8I GCNNGC 1 cut(s) 67
CciI TCATGA 1 cut(s) 49
CviAII CATG 2 cut(s) 50, 123
CviJI RGCY 5 cut(s) 9, 62, 96, 134, 203
CviKI_1 RGCY 5 cut(s) 9, 62, 96, 134, 203
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
Eco130I CCWWGG 1 cut(s) 122
Eco88I CYCGRG 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 122
ErhI CCWWGG 1 cut(s) 122
FaeI CATG 2 cut(s) 53, 126
FaiI YATR 2 cut(s) 51, 124
FatI CATG 2 cut(s) 49, 122
Fnu4HI GCNGC 4 cut(s) 63, 132, 151, 201
Fsp4HI GCNGC 4 cut(s) 63, 132, 151, 201
GluI GCNGC 4 cut(s) 63, 132, 151, 201
Hin1II CATG 2 cut(s) 53, 126
HinfI GANTC 3 cut(s) 29, 118, 178
Hpy188I TCNGA 1 cut(s) 183
Hpy188III TCNNGA 1 cut(s) 50
HpyCH4III ACNGT 1 cut(s) 211
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
Hsp92II CATG 2 cut(s) 53, 126
Kzo9I GATC 1 cut(s) 18
LmnI GCTCC 1 cut(s) 128
LpnPI CCDG 2 cut(s) 95, 171
Lsp1109I GCAGC 1 cut(s) 49
MalI GATC 1 cut(s) 20
MbiI CCGCTC 1 cut(s) 131
MboI GATC 1 cut(s) 18
MboII GAAGA 1 cut(s) 130
MflI RGATCY 1 cut(s) 18
MlyI GAGTC 1 cut(s) 187
MnlI CCTC 3 cut(s) 35, 78, 86
MwoI GCNNNNNNNGC 1 cut(s) 167
NcoI CCATGG 1 cut(s) 122
NdeII GATC 1 cut(s) 18
NlaIII CATG 2 cut(s) 53, 126
PagI TCATGA 1 cut(s) 49
PfeI GAWTC 2 cut(s) 29, 118
PflFI GACNNNGTC 1 cut(s) 187
PkrI GCNGC 4 cut(s) 64, 133, 152, 202
PleI GAGTC 1 cut(s) 186
PpsI GAGTC 1 cut(s) 186
PsuI RGATCY 1 cut(s) 18
PsyI GACNNNGTC 1 cut(s) 187
SatI GCNGC 4 cut(s) 63, 132, 151, 201
Sau3AI GATC 1 cut(s) 18
SchI GAGTC 1 cut(s) 187
SetI ASST 1 cut(s) 89
SsiI CCGC 3 cut(s) 131, 150, 200
StyI CCWWGG 1 cut(s) 122
TaaI ACNGT 1 cut(s) 211
TaqI TCGA 1 cut(s) 191
TauI GCSGC 3 cut(s) 134, 153, 203
TfiI GAWTC 2 cut(s) 29, 118
TseI GCWGC 1 cut(s) 62
TspDTI ATGAA 2 cut(s) 38, 66
TspGWI ACGGA 1 cut(s) 95
Tth111I GACNNNGTC 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.