Rh2DG285300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0020610
Physical Location & Seq
Reverse (-)
32870483 .. 32870791
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG285300.1

Sequence Viewer

Length: 309 bp
ATGCGCTCGGGGCTGCTGGCTTGGATTTCCAGGGGAGGTGGAAAGGTCGTGTGTTCCGTCAGGCGGGAATTCCATGGGGAGCTCGGGTTTTGTCAACTGGGCGGCTTGGATCTTAATGGATTTGGTGTGTGTGCAGCTTTCTTCAAAGTGAGCGGCCATGGTGCTTCATTGGCGGGTGGGAGTCAAACTGGGTCGACAGCGGCGAATGCTATGCCAATGTTAGTGCAAGTTCTAGGGTCTATCATCTTCATCGCAGCATTGGTTTACGATTCTGGTAGTGGACTCGGTGTGTTCGGCTCCTGGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

10.34

Weight (kDa)

8.49

Isoelectric Point (pI)

22.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020610)

Species Orthologous Gene IDs
rosa_laevigata RLG00000003429 RLG00000007759
rosa_multiflora Rmu_sc0000210.1_g000013
rosa_samantha Rh2DG285300 Rh7AG216400 Rh7CG229900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 153
AccI GTMKAC 1 cut(s) 194
AciI CCGC 5 cut(s) 64, 102, 153, 173, 200
AclWI GGATC 1 cut(s) 117
AcoI YGGCCR 1 cut(s) 154
AcsI RAATTY 1 cut(s) 68
AfiI CCNNNNNNNGG 1 cut(s) 63
AgsI TTSAA 1 cut(s) 145
AjnI CCWGG 2 cut(s) 29, 299
AluBI AGCT 2 cut(s) 82, 137
AluI AGCT 2 cut(s) 82, 137
Alw21I GWGCWC 1 cut(s) 84
AlwI GGATC 1 cut(s) 117
Ama87I CYCGRG 2 cut(s) 7, 83
AoxI GGCC 1 cut(s) 154
ApeKI GCWGC 3 cut(s) 13, 134, 254
ApoI RAATTY 1 cut(s) 68
AspLEI GCGC 1 cut(s) 6
AvaI CYCGRG 2 cut(s) 7, 83
BanII GRGCYC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 2 cut(s) 146, 266
BcgI CGANNNNNNTGC 2 cut(s) 193, 227
BciT130I CCWGG 2 cut(s) 31, 301
BfaI CTAG 1 cut(s) 233
BisI GCNGC 6 cut(s) 14, 103, 135, 154, 201, 255
BlsI GCNGC 6 cut(s) 15, 104, 136, 155, 202, 256
Bme1390I CCNGG 2 cut(s) 31, 301
BmeT110I CYCGRG 2 cut(s) 7, 83
BmiI GGNNCC 1 cut(s) 298
BmrFI CCNGG 2 cut(s) 31, 301
BmrI ACTGGG 2 cut(s) 107, 198
BmuI ACTGGG 2 cut(s) 107, 198
BsaJI CCNNGG 3 cut(s) 30, 73, 157
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bsc4I CCNNNNNNNGG 1 cut(s) 63
Bse1I ACTGG 2 cut(s) 102, 193
BseBI CCWGG 2 cut(s) 31, 301
BseDI CCNNGG 3 cut(s) 30, 73, 157
BseLI CCNNNNNNNGG 1 cut(s) 63
BseNI ACTGG 2 cut(s) 102, 193
BseXI GCAGC 2 cut(s) 146, 266
BsgI GTGCAG 1 cut(s) 153
BshFI GGCC 1 cut(s) 156
BsiHKAI GWGCWC 1 cut(s) 84
BsiHKCI CYCGRG 2 cut(s) 7, 83
BslI CCNNNNNNNGG 1 cut(s) 63
BsmI GAATGC 1 cut(s) 211
BsnI GGCC 1 cut(s) 156
BsoBI CYCGRG 2 cut(s) 7, 83
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 1 cut(s) 109
Bsp19I CCATGG 2 cut(s) 73, 157
BspACI CCGC 5 cut(s) 64, 102, 153, 173, 200
BspANI GGCC 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 298
BspPI GGATC 1 cut(s) 117
BsrBI CCGCTC 1 cut(s) 153
BsrI ACTGG 2 cut(s) 102, 193
BssECI CCNNGG 3 cut(s) 30, 73, 157
BssMI GATC 1 cut(s) 109
BssT1I CCWWGG 2 cut(s) 73, 157
Bst2UI CCWGG 2 cut(s) 31, 301
BstC8I GCNNGC 1 cut(s) 18
BstDSI CCRYGG 2 cut(s) 73, 157
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 1 cut(s) 112
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 3 cut(s) 10, 170, 206
BstNI CCWGG 2 cut(s) 31, 301
BstSCI CCNGG 2 cut(s) 29, 299
BstV1I GCAGC 2 cut(s) 146, 266
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BsuRI GGCC 1 cut(s) 156
BtgI CCRYGG 2 cut(s) 73, 157
BtgZI GCGATG 1 cut(s) 235
Cac8I GCNNGC 1 cut(s) 18
CfoI GCGC 1 cut(s) 6
CviAII CATG 2 cut(s) 74, 158
CviJI RGCY 7 cut(s) 13, 20, 82, 105, 137, 156, 297
CviKI_1 RGCY 7 cut(s) 13, 20, 82, 105, 137, 156, 297
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
EaeI YGGCCR 1 cut(s) 154
Ecl136II GAGCTC 1 cut(s) 82
Eco130I CCWWGG 2 cut(s) 73, 157
Eco24I GRGCYC 1 cut(s) 84
Eco53kI GAGCTC 1 cut(s) 82
Eco88I CYCGRG 2 cut(s) 7, 83
EcoICRI GAGCTC 1 cut(s) 82
EcoRI GAATTC 1 cut(s) 68
EcoRII CCWGG 2 cut(s) 29, 299
EcoT14I CCWWGG 2 cut(s) 73, 157
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 2 cut(s) 73, 157
FaeI CATG 2 cut(s) 77, 161
FaiI YATR 3 cut(s) 75, 159, 212
FatI CATG 2 cut(s) 73, 157
FauI CCCGC 2 cut(s) 57, 166
FblI GTMKAC 1 cut(s) 194
Fnu4HI GCNGC 6 cut(s) 14, 103, 135, 154, 201, 255
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 6 cut(s) 14, 103, 135, 154, 201, 255
FspBI CTAG 1 cut(s) 233
GlaI GCGC 1 cut(s) 5
GluI GCNGC 6 cut(s) 14, 103, 135, 154, 201, 255
HaeIII GGCC 1 cut(s) 156
HhaI GCGC 1 cut(s) 6
Hin1II CATG 2 cut(s) 77, 161
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HincII GTYRAC 2 cut(s) 95, 195
HindII GTYRAC 2 cut(s) 95, 195
HinfI GANTC 3 cut(s) 181, 269, 282
Hpy166II GTNNAC 4 cut(s) 95, 195, 265, 281
Hpy8I GTNNAC 4 cut(s) 95, 195, 265, 281
HpyCH4V TGCA 2 cut(s) 134, 226
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 170, 206
Hsp92II CATG 2 cut(s) 77, 161
HspAI GCGC 1 cut(s) 4
Kzo9I GATC 1 cut(s) 109
LmnI GCTCC 2 cut(s) 79, 302
LpnPI CCDG 8 cut(s) 2, 16, 43, 46, 83, 174, 258, 286
Lsp1109I GCAGC 2 cut(s) 146, 266
MaeI CTAG 1 cut(s) 233
MalI GATC 1 cut(s) 111
MbiI CCGCTC 1 cut(s) 153
MboI GATC 1 cut(s) 109
MboII GAAGA 2 cut(s) 133, 238
MflI RGATCY 1 cut(s) 109
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 1 cut(s) 68
MlyI GAGTC 2 cut(s) 190, 276
MnlI CCTC 1 cut(s) 29
MseI TTAA 1 cut(s) 114
MspA1I CMGCKG 1 cut(s) 200
MspR9I CCNGG 2 cut(s) 31, 301
Mva1269I GAATGC 1 cut(s) 211
MvaI CCWGG 2 cut(s) 31, 301
MwoI GCNNNNNNNGC 3 cut(s) 10, 170, 206
NcoI CCATGG 2 cut(s) 73, 157
NdeII GATC 1 cut(s) 109
NlaIII CATG 2 cut(s) 77, 161
NlaIV GGNNCC 1 cut(s) 298
PcsI WCGNNNNNNNCGW 2 cut(s) 54, 200
PctI GAATGC 1 cut(s) 211
PfeI GAWTC 1 cut(s) 269
PkrI GCNGC 6 cut(s) 15, 104, 136, 155, 202, 256
PleI GAGTC 2 cut(s) 189, 276
PpsI GAGTC 2 cut(s) 189, 276
Psp124BI GAGCTC 1 cut(s) 84
Psp6I CCWGG 2 cut(s) 29, 299
PspGI CCWGG 2 cut(s) 29, 299
PspN4I GGNNCC 1 cut(s) 298
PsuI RGATCY 1 cut(s) 109
SacI GAGCTC 1 cut(s) 84
SalI GTCGAC 1 cut(s) 193
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 6 cut(s) 14, 103, 135, 154, 201, 255
Sau3AI GATC 1 cut(s) 109
SchI GAGTC 2 cut(s) 190, 276
ScrFI CCNGG 2 cut(s) 31, 301
SduI GDGCHC 1 cut(s) 84
SetI ASST 4 cut(s) 40, 48, 84, 139
Sse9I AATT 1 cut(s) 68
SsiI CCGC 5 cut(s) 64, 102, 153, 173, 200
SspMI CTAG 1 cut(s) 233
SstI GAGCTC 1 cut(s) 84
StyD4I CCNGG 2 cut(s) 29, 299
StyI CCWWGG 2 cut(s) 73, 157
TaqI TCGA 1 cut(s) 194
TasI AATT 1 cut(s) 68
TauI GCSGC 3 cut(s) 105, 156, 203
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TseI GCWGC 3 cut(s) 13, 134, 254
TspDTI ATGAA 2 cut(s) 156, 238
TspGWI ACGGA 1 cut(s) 46
XapI RAATTY 1 cut(s) 68
XmiI GTMKAC 1 cut(s) 194
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.