Rh7CG229900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0020610
Physical Location & Seq
Forward (+)
21497298 .. 21499280
1983 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG229900.1

Sequence Viewer

Length: 345 bp
ATGACCTCATCGATGCCAAATTCGTACTCCGTTGACAAAGACTACGACGAGCATTCCTATGTTAGGCGCCACGAATTTCAACTCCTTCGTTATTCCTCATCTTCTCTTCGAGGAGTTGAGCTCTTTATCACTAAAGCATATTGTGAAAATTCTGACATTCTTGGAGTTCATGAGCTCGGGGCTGCTGGCTTGGATTTCAAAGGGAGGTGGAGAGTCTGTGTGTTCCGTCAGGGCGAGATTCCATGGGGAGCGGTTTTCTTCAACTTGGGCGGCGATGGTGCTTCGTTGGCGGGTGGGCGTCAGACTGGGTCGATGGGGGCGGATTCTACGGTGGCGTTGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.5

Weight (kDa)

5.85

Isoelectric Point (pI)

34.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020610)

Species Orthologous Gene IDs
rosa_laevigata RLG00000003429 RLG00000007759
rosa_multiflora Rmu_sc0000210.1_g000013
rosa_samantha Rh2DG285300 Rh7AG216400 Rh7CG229900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 66
AccBSI CCGCTC 1 cut(s) 251
AciI CCGC 4 cut(s) 251, 270, 290, 320
AcsI RAATTY 3 cut(s) 19, 74, 148
AcyI GRCGYC 2 cut(s) 67, 298
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 63
AgsI TTSAA 3 cut(s) 80, 199, 262
AluBI AGCT 2 cut(s) 121, 175
AluI AGCT 2 cut(s) 121, 175
Alw21I GWGCWC 2 cut(s) 123, 177
Ama87I CYCGRG 1 cut(s) 176
ApeKI GCWGC 1 cut(s) 182
ApoI RAATTY 3 cut(s) 19, 74, 148
AspLEI GCGC 1 cut(s) 69
AvaI CYCGRG 1 cut(s) 176
BanI GGYRCC 1 cut(s) 66
BanII GRGCYC 2 cut(s) 123, 177
Bbv12I GWGCWC 2 cut(s) 123, 177
BbvI GCAGC 1 cut(s) 169
BccI CCATC 2 cut(s) 269, 307
BfoI RGCGCY 1 cut(s) 70
BisI GCNGC 2 cut(s) 183, 271
BlsI GCNGC 2 cut(s) 184, 272
BmeT110I CYCGRG 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 68
BmrI ACTGGG 1 cut(s) 315
BmsI GCATC 1 cut(s) 3
BmuI ACTGGG 1 cut(s) 315
BplI GAGNNNNNCTC 2 cut(s) 105, 137
Bsa29I ATCGAT 1 cut(s) 11
BsaHI GRCGYC 2 cut(s) 67, 298
BsaJI CCNNGG 1 cut(s) 242
BsaXI ACNNNNNCTCC 2 cut(s) 202, 232
Bsc4I CCNNNNNNNGG 1 cut(s) 63
Bse1I ACTGG 1 cut(s) 310
BseCI ATCGAT 1 cut(s) 11
BseDI CCNNGG 1 cut(s) 242
BseLI CCNNNNNNNGG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 310
BseRI GAGGAG 1 cut(s) 126
BseXI GCAGC 1 cut(s) 169
BshNI GGYRCC 1 cut(s) 66
BshVI ATCGAT 1 cut(s) 11
BsiHKAI GWGCWC 2 cut(s) 123, 177
BsiHKCI CYCGRG 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 63
BsmI GAATGC 1 cut(s) 52
BsoBI CYCGRG 1 cut(s) 176
Bsp1286I GDGCHC 2 cut(s) 123, 177
Bsp19I CCATGG 1 cut(s) 242
BspACI CCGC 4 cut(s) 251, 270, 290, 320
BspDI ATCGAT 1 cut(s) 11
BspHI TCATGA 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 68
BspT107I GGYRCC 1 cut(s) 66
BsrBI CCGCTC 1 cut(s) 251
BsrI ACTGG 1 cut(s) 310
BssECI CCNNGG 1 cut(s) 242
BssNI GRCGYC 2 cut(s) 67, 298
BssT1I CCWWGG 1 cut(s) 242
Bst4CI ACNGT 1 cut(s) 331
Bst6I CTCTTC 1 cut(s) 111
BstACI GRCGYC 2 cut(s) 67, 298
BstC8I GCNNGC 1 cut(s) 187
BstDSI CCRYGG 1 cut(s) 242
BstENI CCTNNNNNAGG 1 cut(s) 61
BstH2I RGCGCY 1 cut(s) 70
BstHHI GCGC 1 cut(s) 69
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstV1I GCAGC 1 cut(s) 169
Bsu15I ATCGAT 1 cut(s) 11
BsuTUI ATCGAT 1 cut(s) 11
BtgI CCRYGG 1 cut(s) 242
BtgZI GCGATG 1 cut(s) 288
Cac8I GCNNGC 1 cut(s) 187
CciI TCATGA 1 cut(s) 169
CfoI GCGC 1 cut(s) 69
ClaI ATCGAT 1 cut(s) 11
CseI GACGC 1 cut(s) 287
Csp6I GTAC 1 cut(s) 25
CviAII CATG 2 cut(s) 170, 243
CviJI RGCY 4 cut(s) 121, 175, 182, 189
CviKI_1 RGCY 4 cut(s) 121, 175, 182, 189
CviQI GTAC 1 cut(s) 25
DinI GGCGCC 1 cut(s) 68
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
EciI GGCGGA 1 cut(s) 335
Ecl136II GAGCTC 2 cut(s) 121, 175
Eco130I CCWWGG 1 cut(s) 242
Eco24I GRGCYC 2 cut(s) 123, 177
Eco53kI GAGCTC 2 cut(s) 121, 175
Eco88I CYCGRG 1 cut(s) 176
EcoICRI GAGCTC 2 cut(s) 121, 175
EcoNI CCTNNNNNAGG 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 242
EcoT38I GRGCYC 2 cut(s) 123, 177
EgeI GGCGCC 1 cut(s) 68
EheI GGCGCC 1 cut(s) 68
ErhI CCWWGG 1 cut(s) 242
FaeI CATG 2 cut(s) 173, 246
FaiI YATR 4 cut(s) 60, 139, 171, 244
FatI CATG 2 cut(s) 169, 242
FauI CCCGC 1 cut(s) 283
Fnu4HI GCNGC 2 cut(s) 183, 271
FriOI GRGCYC 2 cut(s) 123, 177
Fsp4HI GCNGC 2 cut(s) 183, 271
GlaI GCGC 1 cut(s) 68
GluI GCNGC 2 cut(s) 183, 271
HaeII RGCGCY 1 cut(s) 70
HgaI GACGC 1 cut(s) 287
HhaI GCGC 1 cut(s) 69
Hin1I GRCGYC 2 cut(s) 67, 298
Hin1II CATG 2 cut(s) 173, 246
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HinfI GANTC 3 cut(s) 213, 238, 323
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 2 cut(s) 154, 303
Hpy188III TCNNGA 1 cut(s) 170
Hpy8I GTNNAC 1 cut(s) 34
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 1 cut(s) 331
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
Hsp92I GRCGYC 2 cut(s) 67, 298
Hsp92II CATG 2 cut(s) 173, 246
HspAI GCGC 1 cut(s) 67
KasI GGCGCC 1 cut(s) 66
LmnI GCTCC 1 cut(s) 248
LpnPI CCDG 3 cut(s) 171, 215, 291
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 1 cut(s) 3
MbiI CCGCTC 1 cut(s) 251
MboII GAAGA 3 cut(s) 93, 98, 250
MhlI GDGCHC 2 cut(s) 123, 177
MluCI AATT 3 cut(s) 19, 74, 148
Mly113I GGCGCC 1 cut(s) 67
MlyI GAGTC 1 cut(s) 222
MnlI CCTC 4 cut(s) 16, 104, 106, 198
MslI CAYNNNNRTG 1 cut(s) 57
Mva1269I GAATGC 1 cut(s) 52
MwoI GCNNNNNNNGC 1 cut(s) 287
NarI GGCGCC 1 cut(s) 67
NcoI CCATGG 1 cut(s) 242
NlaIII CATG 2 cut(s) 173, 246
NlaIV GGNNCC 1 cut(s) 68
PagI TCATGA 1 cut(s) 169
PctI GAATGC 1 cut(s) 52
PfeI GAWTC 2 cut(s) 238, 323
PflFI GACNNNGTC 1 cut(s) 307
PkrI GCNGC 2 cut(s) 184, 272
PleI GAGTC 1 cut(s) 221
PluTI GGCGCC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 221
Psp124BI GAGCTC 2 cut(s) 123, 177
PspN4I GGNNCC 1 cut(s) 68
PsyI GACNNNGTC 1 cut(s) 307
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 57
SacI GAGCTC 2 cut(s) 123, 177
SatI GCNGC 2 cut(s) 183, 271
SchI GAGTC 1 cut(s) 222
SduI GDGCHC 2 cut(s) 123, 177
SetI ASST 4 cut(s) 8, 123, 177, 209
SfaNI GCATC 1 cut(s) 3
SfoI GGCGCC 1 cut(s) 68
SmiMI CAYNNNNRTG 1 cut(s) 57
Sse9I AATT 3 cut(s) 19, 74, 148
SsiI CCGC 4 cut(s) 251, 270, 290, 320
SspDI GGCGCC 1 cut(s) 66
SstI GAGCTC 2 cut(s) 123, 177
StyI CCWWGG 1 cut(s) 242
TaaI ACNGT 1 cut(s) 331
TaqI TCGA 3 cut(s) 11, 109, 311
TasI AATT 3 cut(s) 19, 74, 148
TauI GCSGC 1 cut(s) 273
TfiI GAWTC 2 cut(s) 238, 323
TseI GCWGC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 158
TspGWI ACGGA 2 cut(s) 19, 215
Tth111I GACNNNGTC 1 cut(s) 307
XagI CCTNNNNNAGG 1 cut(s) 61
XapI RAATTY 3 cut(s) 19, 74, 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.