RLG00000008095

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0019005
Physical Location & Seq
Reverse (-)
25528524 .. 25529267
744 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008095

Sequence Viewer

Length: 744 bp
ATGGTTGAGGCAGGAATCTTCTCCAAACTACCGAAAGACATCAACAGTCTCGATGAGCCAACAAGGCATCAATTTGCAGAGCTGCTCATGTTGTTATCTTCACTTGCAAATACCCCATTTCCTCTGCCCTCATCTGAAATTGTCCCTTTTCTAGTTGGCATTCTAGAGTCAGATTCGAGCAATGTCGAAACCAAACAGTCATGTTTGGGTGCACTTCACAACCTATCCACCATGTTGGACAATGCAGGAGATTTAGTCTCCAATGGGGTAGTGGACACACTCTTGAAATTGTCCTCCGATAAAGAAATCTCCGAGAAAGCTCTTGCAACATTGGGGAACTTGGTTGTGACCTTAACTTGGGATGAAGTCCCTGGAATCCATGTTGAAGAGCGAGGAGTATCAAGAGAAGTGAAACAGTTGCGAGAGCAATTGGAAGAGCAAGCGAAAAAGGCACAAGAGAGAGAAGCACACATGATGGAGGAACTACAAAGCAAAATGGCTGAGCAAACAAAACGGATGGAACAAATGTTTGAAGTGAGGTGCGTAGAGATGGCACTCCAAAAAATGGGAGAGATGTTTAAACAATGCGGAATATCAGTGGATACACAAGAAGATGTCATGCAAACGATGTCTCAGTTTGCTCGTGACATGTCTCAAAGGCCATCGACTGTTGCTTTTTCACCAGATGATGATGTCTACCGTCCCACAATGCCATTTGATTGCCCCAATATACAAATTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

248

Amino Acids

27.69

Weight (kDa)

4.61

Isoelectric Point (pI)

56.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019005)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0431701
rosa_laevigata RLG00000008095
rosa_roxburghii Rroxscaffold_1G00025470 Rroxscaffold_5G00342860
rosa_samantha Rh1BG238100 Rh1DG266200 Rh5CG426600 Rh6CG103700 Rh6DG094600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 565
AccI GTMKAC 1 cut(s) 696
AciI CCGC 1 cut(s) 588
AfiI CCNNNNNNNGG 2 cut(s) 357, 565
AflIII ACRYGT 1 cut(s) 648
AgsI TTSAA 3 cut(s) 286, 386, 533
AjnI CCWGG 1 cut(s) 370
AluBI AGCT 2 cut(s) 82, 320
AluI AGCT 2 cut(s) 82, 320
Alw21I GWGCWC 1 cut(s) 214
Alw26I GTCTC 4 cut(s) 53, 262, 636, 657
Alw44I GTGCAC 1 cut(s) 210
AoxI GGCC 1 cut(s) 659
ApaLI GTGCAC 1 cut(s) 210
ApeKI GCWGC 1 cut(s) 82
AsuHPI GGTGA 1 cut(s) 672
BaeGI GKGCMC 1 cut(s) 214
BauI CACGAG 1 cut(s) 642
Bbv12I GWGCWC 1 cut(s) 214
BbvI GCAGC 1 cut(s) 69
BccI CCATC 4 cut(s) 469, 511, 544, 670
BciT130I CCWGG 1 cut(s) 372
BciVI GTATCC 1 cut(s) 595
BcoDI GTCTC 4 cut(s) 53, 262, 636, 657
BfaI CTAG 2 cut(s) 152, 164
BfuI GTATCC 1 cut(s) 595
BglI GCCNNNNNGGC 1 cut(s) 64
BisI GCNGC 1 cut(s) 83
BlpI GCTNAGC 1 cut(s) 501
BlsI GCNGC 1 cut(s) 84
Bme1390I CCNGG 1 cut(s) 372
BmrFI CCNGG 1 cut(s) 372
BmsI GCATC 1 cut(s) 76
Bpu1102I GCTNAGC 1 cut(s) 501
BsaJI CCNNGG 1 cut(s) 370
BsaXI ACNNNNNCTCC 2 cut(s) 240, 270
Bsc4I CCNNNNNNNGG 2 cut(s) 357, 565
Bse3DI GCAATG 1 cut(s) 187
BseBI CCWGG 1 cut(s) 372
BseDI CCNNGG 1 cut(s) 370
BseGI GGATG 2 cut(s) 367, 522
BseLI CCNNNNNNNGG 2 cut(s) 357, 565
BseMI GCAATG 1 cut(s) 187
BseMII CTCAG 2 cut(s) 492, 647
BseRI GAGGAG 1 cut(s) 408
BseSI GKGCMC 1 cut(s) 214
BseXI GCAGC 1 cut(s) 69
BshFI GGCC 1 cut(s) 661
BsiHKAI GWGCWC 1 cut(s) 214
BslFI GGGAC 3 cut(s) 128, 353, 687
BslI CCNNNNNNNGG 2 cut(s) 357, 565
BsmAI GTCTC 4 cut(s) 53, 262, 636, 657
BsmFI GGGAC 3 cut(s) 128, 353, 687
BsmI GAATGC 1 cut(s) 159
BsnI GGCC 1 cut(s) 661
Bsp1286I GDGCHC 1 cut(s) 214
Bsp1720I GCTNAGC 1 cut(s) 501
BspACI CCGC 1 cut(s) 588
BspANI GGCC 1 cut(s) 661
BspCNI CTCAG 2 cut(s) 493, 646
BspQI GCTCTTC 2 cut(s) 381, 429
BsrDI GCAATG 1 cut(s) 187
BssECI CCNNGG 1 cut(s) 370
BssSI CACGAG 1 cut(s) 642
Bst2BI CACGAG 1 cut(s) 642
Bst2UI CCWGG 1 cut(s) 372
Bst4CI ACNGT 5 cut(s) 47, 198, 417, 670, 701
Bst6I CTCTTC 2 cut(s) 381, 429
BstC8I GCNNGC 1 cut(s) 441
BstDEI CTNAG 2 cut(s) 501, 633
BstF5I GGATG 2 cut(s) 367, 522
BstMAI GTCTC 4 cut(s) 53, 262, 636, 657
BstMWI GCNNNNNNNGC 2 cut(s) 64, 449
BstNI CCWGG 1 cut(s) 372
BstNSI RCATGY 1 cut(s) 652
BstSCI CCNGG 1 cut(s) 370
BstSLI GKGCMC 1 cut(s) 214
BstV1I GCAGC 1 cut(s) 69
BstXI CCANNNNNNTGG 1 cut(s) 235
BsuI GTATCC 1 cut(s) 595
BsuRI GGCC 1 cut(s) 661
BtsCI GGATG 2 cut(s) 367, 522
BtsIMutI CAGTG 1 cut(s) 603
Cac8I GCNNGC 1 cut(s) 441
CviAII CATG 7 cut(s) 88, 201, 232, 380, 472, 619, 649
CviJI RGCY 5 cut(s) 58, 82, 320, 500, 661
CviKI_1 RGCY 5 cut(s) 58, 82, 320, 500, 661
DdeI CTNAG 2 cut(s) 501, 633
DraI TTTAAA 1 cut(s) 580
Eam1104I CTCTTC 2 cut(s) 381, 429
EarI CTCTTC 2 cut(s) 381, 429
EcoRII CCWGG 1 cut(s) 370
FaeI CATG 7 cut(s) 91, 204, 235, 383, 475, 622, 652
FaiI YATR 8 cut(s) 89, 202, 233, 381, 473, 620, 650, 731
FaqI GGGAC 3 cut(s) 128, 353, 687
FatI CATG 7 cut(s) 87, 200, 231, 379, 471, 618, 648
FblI GTMKAC 1 cut(s) 696
Fnu4HI GCNGC 1 cut(s) 83
FokI GGATG 2 cut(s) 374, 529
Fsp4HI GCNGC 1 cut(s) 83
FspBI CTAG 2 cut(s) 152, 164
GluI GCNGC 1 cut(s) 83
HaeIII GGCC 1 cut(s) 661
Hin1II CATG 7 cut(s) 91, 204, 235, 383, 475, 622, 652
HinfI GANTC 4 cut(s) 15, 167, 173, 375
HphI GGTGA 1 cut(s) 672
Hpy166II GTNNAC 3 cut(s) 212, 274, 697
Hpy188I TCNGA 4 cut(s) 136, 172, 298, 313
Hpy188III TCNNGA 5 cut(s) 50, 164, 283, 402, 644
Hpy8I GTNNAC 3 cut(s) 212, 274, 697
HpyCH4III ACNGT 5 cut(s) 47, 198, 417, 670, 701
HpyCH4V TGCA 6 cut(s) 77, 107, 212, 245, 326, 622
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 449
HpyF3I CTNAG 2 cut(s) 501, 633
Hsp92II CATG 7 cut(s) 91, 204, 235, 383, 475, 622, 652
LguI GCTCTTC 2 cut(s) 381, 429
LpnPI CCDG 4 cut(s) 231, 357, 384, 696
Lsp1109I GCAGC 1 cut(s) 69
LweI GCATC 1 cut(s) 76
MaeI CTAG 2 cut(s) 152, 164
MaeIII GTNAC 2 cut(s) 346, 644
MboII GAAGA 5 cut(s) 10, 90, 398, 446, 623
MfeI CAATTG 1 cut(s) 428
MhlI GDGCHC 1 cut(s) 214
MluCI AATT 5 cut(s) 71, 138, 287, 428, 735
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 6 cut(s) 132, 139, 304, 386, 472, 531
MseI TTAA 3 cut(s) 353, 579, 742
MspR9I CCNGG 1 cut(s) 372
MssI GTTTAAAC 1 cut(s) 580
MunI CAATTG 1 cut(s) 428
Mva1269I GAATGC 1 cut(s) 159
MvaI CCWGG 1 cut(s) 372
MwoI GCNNNNNNNGC 2 cut(s) 64, 449
NlaIII CATG 7 cut(s) 91, 204, 235, 383, 475, 622, 652
NmuCI GTSAC 2 cut(s) 346, 644
NspI RCATGY 1 cut(s) 652
PciI ACATGT 1 cut(s) 648
PciSI GCTCTTC 2 cut(s) 381, 429
PctI GAATGC 1 cut(s) 159
PfeI GAWTC 3 cut(s) 15, 173, 375
PflMI CCANNNNNTGG 1 cut(s) 565
PkrI GCNGC 1 cut(s) 84
PleI GAGTC 1 cut(s) 175
PmeI GTTTAAAC 1 cut(s) 580
PpsI GAGTC 1 cut(s) 175
PscI ACATGT 1 cut(s) 648
Psp6I CCWGG 1 cut(s) 370
PspGI CCWGG 1 cut(s) 370
SapI GCTCTTC 2 cut(s) 381, 429
SaqAI TTAA 3 cut(s) 353, 579, 742
SatI GCNGC 1 cut(s) 83
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 372
SduI GDGCHC 1 cut(s) 214
SetI ASST 5 cut(s) 84, 225, 322, 353, 542
SfaNI GCATC 1 cut(s) 76
Sse9I AATT 5 cut(s) 71, 138, 287, 428, 735
SsiI CCGC 1 cut(s) 588
SspMI CTAG 2 cut(s) 152, 164
StyD4I CCNGG 1 cut(s) 370
TaaI ACNGT 5 cut(s) 47, 198, 417, 670, 701
TaqI TCGA 4 cut(s) 51, 176, 186, 665
TasI AATT 5 cut(s) 71, 138, 287, 428, 735
TfiI GAWTC 3 cut(s) 15, 173, 375
Tru1I TTAA 3 cut(s) 353, 579, 742
Tru9I TTAA 3 cut(s) 353, 579, 742
TscAI CASTG 1 cut(s) 603
TseFI GTSAC 2 cut(s) 346, 644
TseI GCWGC 1 cut(s) 82
Tsp45I GTSAC 2 cut(s) 346, 644
TspDTI ATGAA 1 cut(s) 378
TspGWI ACGGA 1 cut(s) 529
TspRI CASTG 1 cut(s) 603
Van91I CCANNNNNTGG 1 cut(s) 565
VneI GTGCAC 1 cut(s) 210
XbaI TCTAGA 1 cut(s) 163
XceI RCATGY 1 cut(s) 652
XcmI CCANNNNNNNNNTGG 1 cut(s) 268
XmiI GTMKAC 1 cut(s) 696
XspI CTAG 2 cut(s) 152, 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.