U-box domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0431701 |
| rosa_laevigata | RLG00000008095 |
| rosa_roxburghii | Rroxscaffold_1G00025470 Rroxscaffold_5G00342860 |
| rosa_samantha | Rh1BG238100 Rh1DG266200 Rh5CG426600 Rh6CG103700 Rh6DG094600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 130 |
| AclWI | GGATC | 1 cut(s) | 352 |
| AcsI | RAATTY | 1 cut(s) | 388 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 573 |
| AgsI | TTSAA | 3 cut(s) | 8, 192, 502 |
| AluBI | AGCT | 2 cut(s) | 88, 536 |
| AluI | AGCT | 2 cut(s) | 88, 536 |
| Alw21I | GWGCWC | 3 cut(s) | 55, 90, 430 |
| Alw26I | GTCTC | 2 cut(s) | 269, 478 |
| Alw44I | GTGCAC | 2 cut(s) | 51, 426 |
| AlwI | GGATC | 1 cut(s) | 352 |
| ApaLI | GTGCAC | 2 cut(s) | 51, 426 |
| ApoI | RAATTY | 1 cut(s) | 388 |
| AsuC2I | CCSGG | 1 cut(s) | 529 |
| AsuHPI | GGTGA | 1 cut(s) | 95 |
| BaeGI | GKGCMC | 2 cut(s) | 55, 430 |
| BanII | GRGCYC | 1 cut(s) | 90 |
| Bbv12I | GWGCWC | 3 cut(s) | 55, 90, 430 |
| BccI | CCATC | 1 cut(s) | 151 |
| BcnI | CCSGG | 1 cut(s) | 529 |
| BcoDI | GTCTC | 2 cut(s) | 269, 478 |
| BfaI | CTAG | 3 cut(s) | 63, 368, 380 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 280 |
| Bme1390I | CCNGG | 1 cut(s) | 529 |
| BmrFI | CCNGG | 1 cut(s) | 529 |
| BmsI | GCATC | 2 cut(s) | 292, 602 |
| BpuMI | CCSGG | 1 cut(s) | 529 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 456, 486 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 573 |
| Bse3DI | GCAATG | 1 cut(s) | 403 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 573 |
| BseMI | GCAATG | 1 cut(s) | 403 |
| BseMII | CTCAG | 1 cut(s) | 86 |
| BseSI | GKGCMC | 2 cut(s) | 55, 430 |
| BsiHKAI | GWGCWC | 3 cut(s) | 55, 90, 430 |
| BsiSI | CCGG | 1 cut(s) | 528 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 573 |
| BsmAI | GTCTC | 2 cut(s) | 269, 478 |
| BsmI | GAATGC | 1 cut(s) | 375 |
| Bsp1286I | GDGCHC | 3 cut(s) | 55, 90, 430 |
| Bsp143I | GATC | 1 cut(s) | 357 |
| BspACI | CCGC | 1 cut(s) | 130 |
| BspCNI | CTCAG | 1 cut(s) | 87 |
| BspPI | GGATC | 1 cut(s) | 352 |
| BspQI | GCTCTTC | 2 cut(s) | 33, 95 |
| BsrDI | GCAATG | 1 cut(s) | 403 |
| BssMI | GATC | 1 cut(s) | 357 |
| Bst4CI | ACNGT | 3 cut(s) | 263, 414, 507 |
| Bst6I | CTCTTC | 2 cut(s) | 33, 95 |
| BstDEI | CTNAG | 2 cut(s) | 95, 135 |
| BstKTI | GATC | 1 cut(s) | 360 |
| BstMAI | GTCTC | 2 cut(s) | 269, 478 |
| BstMBI | GATC | 1 cut(s) | 357 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 280 |
| BstNSI | RCATGY | 1 cut(s) | 451 |
| BstSCI | CCNGG | 1 cut(s) | 527 |
| BstSLI | GKGCMC | 2 cut(s) | 55, 430 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 451 |
| CseI | GACGC | 1 cut(s) | 153 |
| CviAII | CATG | 4 cut(s) | 217, 304, 417, 448 |
| CviJI | RGCY | 6 cut(s) | 43, 88, 164, 212, 274, 536 |
| CviKI_1 | RGCY | 6 cut(s) | 43, 88, 164, 212, 274, 536 |
| DdeI | CTNAG | 2 cut(s) | 95, 135 |
| DpnI | GATC | 1 cut(s) | 359 |
| DpnII | GATC | 1 cut(s) | 357 |
| Eam1104I | CTCTTC | 2 cut(s) | 33, 95 |
| EarI | CTCTTC | 2 cut(s) | 33, 95 |
| Ecl136II | GAGCTC | 1 cut(s) | 88 |
| Eco24I | GRGCYC | 1 cut(s) | 90 |
| Eco32I | GATATC | 1 cut(s) | 34 |
| Eco53kI | GAGCTC | 1 cut(s) | 88 |
| EcoICRI | GAGCTC | 1 cut(s) | 88 |
| EcoRV | GATATC | 1 cut(s) | 34 |
| EcoT38I | GRGCYC | 1 cut(s) | 90 |
| FaeI | CATG | 4 cut(s) | 220, 307, 420, 451 |
| FaiI | YATR | 9 cut(s) | 48, 114, 196, 218, 305, 349, 351, 418, 449 |
| FatI | CATG | 4 cut(s) | 216, 303, 416, 447 |
| FauNDI | CATATG | 1 cut(s) | 349 |
| FriOI | GRGCYC | 1 cut(s) | 90 |
| FspBI | CTAG | 3 cut(s) | 63, 368, 380 |
| HapII | CCGG | 1 cut(s) | 528 |
| HgaI | GACGC | 1 cut(s) | 153 |
| Hin1II | CATG | 4 cut(s) | 220, 307, 420, 451 |
| HinfI | GANTC | 2 cut(s) | 231, 383 |
| HpaII | CCGG | 1 cut(s) | 528 |
| HphI | GGTGA | 1 cut(s) | 95 |
| Hpy166II | GTNNAC | 3 cut(s) | 53, 428, 490 |
| Hpy188I | TCNGA | 2 cut(s) | 103, 514 |
| Hpy188III | TCNNGA | 5 cut(s) | 94, 203, 266, 380, 499 |
| Hpy8I | GTNNAC | 3 cut(s) | 53, 428, 490 |
| HpyAV | CCTTC | 1 cut(s) | 574 |
| HpyCH4III | ACNGT | 3 cut(s) | 263, 414, 507 |
| HpyCH4V | TGCA | 6 cut(s) | 53, 293, 323, 428, 461, 542 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 280 |
| HpyF3I | CTNAG | 2 cut(s) | 95, 135 |
| Hsp92II | CATG | 4 cut(s) | 220, 307, 420, 451 |
| Kzo9I | GATC | 1 cut(s) | 357 |
| LguI | GCTCTTC | 2 cut(s) | 33, 95 |
| LpnPI | CCDG | 6 cut(s) | 107, 188, 213, 447, 457, 541 |
| LweI | GCATC | 2 cut(s) | 292, 602 |
| MaeI | CTAG | 3 cut(s) | 63, 368, 380 |
| MaeIII | GTNAC | 2 cut(s) | 107, 562 |
| MalI | GATC | 1 cut(s) | 359 |
| MboI | GATC | 1 cut(s) | 357 |
| MboII | GAAGA | 6 cut(s) | 50, 82, 88, 226, 306, 589 |
| MhlI | GDGCHC | 3 cut(s) | 55, 90, 430 |
| MluCI | AATT | 3 cut(s) | 206, 287, 388 |
| MlyI | GAGTC | 1 cut(s) | 392 |
| MmeI | TCCRAC | 1 cut(s) | 432 |
| MnlI | CCTC | 6 cut(s) | 54, 154, 217, 348, 355, 520 |
| MseI | TTAA | 2 cut(s) | 569, 585 |
| MslI | CAYNNNNRTG | 1 cut(s) | 27 |
| MspA1I | CMGCKG | 1 cut(s) | 130 |
| MspI | CCGG | 1 cut(s) | 528 |
| MspR9I | CCNGG | 1 cut(s) | 529 |
| Mva1269I | GAATGC | 1 cut(s) | 375 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 280 |
| NciI | CCSGG | 1 cut(s) | 529 |
| NdeI | CATATG | 1 cut(s) | 349 |
| NdeII | GATC | 1 cut(s) | 357 |
| NlaIII | CATG | 4 cut(s) | 220, 307, 420, 451 |
| NmuCI | GTSAC | 2 cut(s) | 107, 562 |
| NspI | RCATGY | 1 cut(s) | 451 |
| PciSI | GCTCTTC | 2 cut(s) | 33, 95 |
| PctI | GAATGC | 1 cut(s) | 375 |
| PfeI | GAWTC | 1 cut(s) | 231 |
| PfoI | TCCNGGA | 1 cut(s) | 527 |
| PleI | GAGTC | 1 cut(s) | 391 |
| PpsI | GAGTC | 1 cut(s) | 391 |
| Psp124BI | GAGCTC | 1 cut(s) | 90 |
| RseI | CAYNNNNRTG | 1 cut(s) | 27 |
| SacI | GAGCTC | 1 cut(s) | 90 |
| SapI | GCTCTTC | 2 cut(s) | 33, 95 |
| SaqAI | TTAA | 2 cut(s) | 569, 585 |
| Sau3AI | GATC | 1 cut(s) | 357 |
| SchI | GAGTC | 1 cut(s) | 392 |
| ScrFI | CCNGG | 1 cut(s) | 529 |
| SduI | GDGCHC | 3 cut(s) | 55, 90, 430 |
| SetI | ASST | 6 cut(s) | 90, 441, 538, 569, 585, 635 |
| SfaNI | GCATC | 2 cut(s) | 292, 602 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 27 |
| Sse9I | AATT | 3 cut(s) | 206, 287, 388 |
| SsiI | CCGC | 1 cut(s) | 130 |
| SspMI | CTAG | 3 cut(s) | 63, 368, 380 |
| SstI | GAGCTC | 1 cut(s) | 90 |
| StyD4I | CCNGG | 1 cut(s) | 527 |
| TaaI | ACNGT | 3 cut(s) | 263, 414, 507 |
| TaqI | TCGA | 3 cut(s) | 36, 267, 402 |
| TasI | AATT | 3 cut(s) | 206, 287, 388 |
| TfiI | GAWTC | 1 cut(s) | 231 |
| Tru1I | TTAA | 2 cut(s) | 569, 585 |
| Tru9I | TTAA | 2 cut(s) | 569, 585 |
| TseFI | GTSAC | 2 cut(s) | 107, 562 |
| Tsp45I | GTSAC | 2 cut(s) | 107, 562 |
| TspDTI | ATGAA | 1 cut(s) | 366 |
| VneI | GTGCAC | 2 cut(s) | 51, 426 |
| XapI | RAATTY | 1 cut(s) | 388 |
| XbaI | TCTAGA | 1 cut(s) | 379 |
| XceI | RCATGY | 1 cut(s) | 451 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 484 |
| XspI | CTAG | 3 cut(s) | 63, 368, 380 |