Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0020001

Physical Location & Seq

Genomic Coordinates Forward (+)

28849565 .. 28850170

Gene Structure 606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008319

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTTGGCAATGGCGTCGACTTCCCCTCCTTCAACTTCCGCAACCTCACCTTCCTCGGCAACTCCCACATCTGCAACGGCGTCGTCGGCCTCGCTAATGACCTCCCCGTCCCCGCCTCTTCCGCTGACTCCGTCCTCTACAACTCCCCCATCCGCTTCTTCGACCATGGGCTCTCTCCTCCCAATTCTTAACCTCAATGCCTCTCCTCAATCCTTCCCCAATTCAACCGTAGCCACTTCCACAATAGCCCCCAGATCTCGATATATCGTCGTCATTGCACCGGACAACGTCTACTCCAAGTTCCACCGCATTTCGGAGCTCTTCCACACCGCGTTTGCGAAAGGGATTCAGAATTGCGACGATGATGGCGGCGACGAGGACAACGTCATTTTGGACCTGGAGTCCGGTGTGATTGTTCTGGTGGAGGAAAATAGCAGGCAACAGCAGCTGACAGAGGACGGAAGAAGTACCCGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000775 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0009292 GO:0009294 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019222 GO:0019538 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0034641 GO:0036211 GO:0040029 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0044764 GO:0046483 GO:0048519 GO:0050789 GO:0051276 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080188 GO:0090304 GO:0098687 GO:0140096 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

160

Amino Acids

16.56

Weight (kDa)

4.64

Isoelectric Point (pI)

71.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020001)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008319
rosa_multiflora	Rmu_sc0001336.1_g000011
rosa_samantha	Rh2AG524300 Rh2CG509000 Rh2DG370200 Rh5AG431400 Rh6AG298200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	106
AccI	GTMKAC	2 cut(s)	17, 291
AccII	CGCG	1 cut(s)	332
AciI	CCGC	8 cut(s)	39, 113, 122, 153, 307, 330, 369, 472
AcyI	GRCGYC	2 cut(s)	14, 80
AfaI	GTAC	1 cut(s)	469
AfiI	CCNNNNNNNGG	1 cut(s)	313
AgsI	TTSAA	2 cut(s)	33, 225
AhdI	GACNNNNNGTC	1 cut(s)	400
AjnI	CCWGG	1 cut(s)	396
AluBI	AGCT	3 cut(s)	319, 448, 477
AluI	AGCT	3 cut(s)	319, 448, 477
Alw21I	GWGCWC	1 cut(s)	321
AlwNI	CAGNNNCTG	1 cut(s)	448
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	2 cut(s)	445, 474
AspS9I	GGNCC	1 cut(s)	394
AsuHPI	GGTGA	1 cut(s)	39
AvaII	GGWCC	1 cut(s)	394
BanII	GRGCYC	2 cut(s)	173, 321
Bbv12I	GWGCWC	1 cut(s)	321
BbvI	GCAGC	1 cut(s)	457
BccI	CCATC	2 cut(s)	157, 359
BceAI	ACGGC	1 cut(s)	93
BcgI	CGANNNNNNTGC	3 cut(s)	31, 63, 97
BciT130I	CCWGG	1 cut(s)	398
BfaI	CTAG	1 cut(s)	478
BglII	AGATCT	1 cut(s)	254
BisI	GCNGC	3 cut(s)	370, 446, 475
BlsI	GCNGC	3 cut(s)	371, 447, 476
Bme1390I	CCNGG	1 cut(s)	398
Bme18I	GGWCC	1 cut(s)	394
BmeRI	GACNNNNNGTC	1 cut(s)	400
BmgT120I	GGNCC	1 cut(s)	394
BmrFI	CCNGG	1 cut(s)	398
BpmI	CTGGAG	1 cut(s)	419
BsaHI	GRCGYC	2 cut(s)	14, 80
BsaJI	CCNNGG	2 cut(s)	54, 165
BsaWI	WCCGGW	2 cut(s)	280, 404
BsaXI	ACNNNNNCTCC	4 cut(s)	10, 40, 278, 308
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
Bse3DI	GCAATG	2 cut(s)	15, 273
BseBI	CCWGG	1 cut(s)	398
BseDI	CCNNGG	2 cut(s)	54, 165
BseGI	GGATG	1 cut(s)	149
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseMI	GCAATG	2 cut(s)	15, 273
BseRI	GAGGAG	2 cut(s)	167, 195
BseXI	GCAGC	1 cut(s)	457
Bsh1236I	CGCG	1 cut(s)	332
BshFI	GGCC	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	321
BsiSI	CCGG	2 cut(s)	281, 405
BslFI	GGGAC	1 cut(s)	94
BslI	CCNNNNNNNGG	1 cut(s)	313
BsmFI	GGGAC	1 cut(s)	94
BsnI	GGCC	1 cut(s)	89
Bsp1286I	GDGCHC	2 cut(s)	173, 321
Bsp143I	GATC	1 cut(s)	254
Bsp19I	CCATGG	1 cut(s)	165
BspACI	CCGC	8 cut(s)	39, 113, 122, 153, 307, 330, 369, 472
BspANI	GGCC	1 cut(s)	89
BspFNI	CGCG	1 cut(s)	332
BspQI	GCTCTTC	1 cut(s)	326
BsrDI	GCAATG	2 cut(s)	15, 273
BssECI	CCNNGG	2 cut(s)	54, 165
BssMI	GATC	1 cut(s)	254
BssNI	GRCGYC	2 cut(s)	14, 80
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	398
Bst4CI	ACNGT	1 cut(s)	229
Bst6I	CTCTTC	2 cut(s)	123, 326
BstACI	GRCGYC	2 cut(s)	14, 80
BstC8I	GCNNGC	1 cut(s)	437
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	1 cut(s)	149
BstFNI	CGCG	1 cut(s)	332
BstKTI	GATC	1 cut(s)	257
BstMBI	GATC	1 cut(s)	254
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 121, 445
BstNI	CCWGG	1 cut(s)	398
BstSCI	CCNGG	1 cut(s)	396
BstUI	CGCG	1 cut(s)	332
BstV1I	GCAGC	1 cut(s)	457
BstX2I	RGATCY	1 cut(s)	254
BstYI	RGATCY	1 cut(s)	254
BsuRI	GGCC	1 cut(s)	89
BtgI	CCRYGG	1 cut(s)	165
BtsCI	GGATG	1 cut(s)	149
Cac8I	GCNNGC	1 cut(s)	437
CaiI	CAGNNNCTG	1 cut(s)	448
Cfr13I	GGNCC	1 cut(s)	394
CseI	GACGC	2 cut(s)	3, 69
Csp6I	GTAC	1 cut(s)	468
CviAII	CATG	1 cut(s)	166
CviJI	RGCY	7 cut(s)	89, 171, 233, 248, 319, 448, 477
CviKI_1	RGCY	7 cut(s)	89, 171, 233, 248, 319, 448, 477
CviQI	GTAC	1 cut(s)	468
DpnI	GATC	1 cut(s)	256
DpnII	GATC	1 cut(s)	254
DrdI	GACNNNNNNGTC	1 cut(s)	106
DriI	GACNNNNNGTC	1 cut(s)	400
DseDI	GACNNNNNNGTC	1 cut(s)	106
Eam1104I	CTCTTC	2 cut(s)	123, 326
Eam1105I	GACNNNNNGTC	1 cut(s)	400
EarI	CTCTTC	2 cut(s)	123, 326
Ecl136II	GAGCTC	1 cut(s)	319
Eco130I	CCWWGG	1 cut(s)	165
Eco24I	GRGCYC	2 cut(s)	173, 321
Eco47I	GGWCC	1 cut(s)	394
Eco53kI	GAGCTC	1 cut(s)	319
EcoICRI	GAGCTC	1 cut(s)	319
EcoRII	CCWGG	1 cut(s)	396
EcoT14I	CCWWGG	1 cut(s)	165
EcoT38I	GRGCYC	2 cut(s)	173, 321
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	1 cut(s)	169
FaiI	YATR	2 cut(s)	167, 264
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	1 cut(s)	165
FauI	CCCGC	1 cut(s)	120
FblI	GTMKAC	2 cut(s)	17, 291
Fnu4HI	GCNGC	3 cut(s)	370, 446, 475
FokI	GGATG	1 cut(s)	136
FriOI	GRGCYC	2 cut(s)	173, 321
Fsp4HI	GCNGC	3 cut(s)	370, 446, 475
FspBI	CTAG	1 cut(s)	478
GluI	GCNGC	3 cut(s)	370, 446, 475
GsuI	CTGGAG	1 cut(s)	419
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	2 cut(s)	281, 405
HgaI	GACGC	2 cut(s)	3, 69
Hin1I	GRCGYC	2 cut(s)	14, 80
Hin1II	CATG	1 cut(s)	169
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HinfI	GANTC	3 cut(s)	127, 346, 401
HpaII	CCGG	2 cut(s)	281, 405
HphI	GGTGA	1 cut(s)	39
Hpy166II	GTNNAC	2 cut(s)	18, 292
Hpy188I	TCNGA	2 cut(s)	316, 351
Hpy188III	TCNNGA	1 cut(s)	258
Hpy8I	GTNNAC	2 cut(s)	18, 292
Hpy99I	CGWCG	6 cut(s)	19, 85, 88, 272, 362, 377
HpyAV	CCTTC	3 cut(s)	39, 60, 223
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4IV	ACGT	2 cut(s)	288, 384
HpyCH4V	TGCA	2 cut(s)	74, 278
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 121, 445
HpySE526I	ACGT	2 cut(s)	288, 384
Hsp92I	GRCGYC	2 cut(s)	14, 80
Hsp92II	CATG	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	254
LguI	GCTCTTC	1 cut(s)	326
LmnI	GCTCC	1 cut(s)	316
LpnPI	CCDG	7 cut(s)	265, 294, 383, 404, 410, 418, 421
Lsp1109I	GCAGC	1 cut(s)	457
MaeI	CTAG	1 cut(s)	478
MaeII	ACGT	2 cut(s)	288, 384
MalI	GATC	1 cut(s)	256
MboI	GATC	1 cut(s)	254
MboII	GAAGA	4 cut(s)	110, 150, 313, 474
MflI	RGATCY	1 cut(s)	254
MhlI	GDGCHC	2 cut(s)	173, 321
MluCI	AATT	3 cut(s)	183, 220, 352
MlyI	GAGTC	2 cut(s)	121, 410
MseI	TTAA	1 cut(s)	189
MspA1I	CMGCKG	2 cut(s)	124, 448
MspI	CCGG	2 cut(s)	281, 405
MspR9I	CCNGG	1 cut(s)	398
MvaI	CCWGG	1 cut(s)	398
MvnI	CGCG	1 cut(s)	332
MwoI	GCNNNNNNNGC	3 cut(s)	86, 121, 445
NcoI	CCATGG	1 cut(s)	165
NdeII	GATC	1 cut(s)	254
NlaIII	CATG	1 cut(s)	169
NmeAIII	GCCGAG	1 cut(s)	35
PciSI	GCTCTTC	1 cut(s)	326
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PfeI	GAWTC	1 cut(s)	346
PflFI	GACNNNGTC	3 cut(s)	130, 287, 383
PkrI	GCNGC	3 cut(s)	371, 447, 476
PleI	GAGTC	2 cut(s)	121, 409
PpsI	GAGTC	2 cut(s)	121, 409
Psp124BI	GAGCTC	1 cut(s)	321
Psp6I	CCWGG	1 cut(s)	396
PspGI	CCWGG	1 cut(s)	396
PspPI	GGNCC	1 cut(s)	394
PstNI	CAGNNNCTG	1 cut(s)	448
PsuI	RGATCY	1 cut(s)	254
PsyI	GACNNNGTC	3 cut(s)	130, 287, 383
PvuII	CAGCTG	1 cut(s)	448
RsaI	GTAC	1 cut(s)	469
RsaNI	GTAC	1 cut(s)	468
SacI	GAGCTC	1 cut(s)	321
SalI	GTCGAC	1 cut(s)	16
SapI	GCTCTTC	1 cut(s)	326
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	3 cut(s)	370, 446, 475
Sau3AI	GATC	1 cut(s)	254
Sau96I	GGNCC	1 cut(s)	394
SchI	GAGTC	2 cut(s)	121, 410
ScrFI	CCNGG	1 cut(s)	398
SduI	GDGCHC	2 cut(s)	173, 321
SinI	GGWCC	1 cut(s)	394
Sse9I	AATT	3 cut(s)	183, 220, 352
SsiI	CCGC	8 cut(s)	39, 113, 122, 153, 307, 330, 369, 472
SspMI	CTAG	1 cut(s)	478
SstI	GAGCTC	1 cut(s)	321
StyD4I	CCNGG	1 cut(s)	396
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	229
TaiI	ACGT	2 cut(s)	291, 387
TaqI	TCGA	3 cut(s)	17, 161, 259
TasI	AATT	3 cut(s)	183, 220, 352
TauI	GCSGC	1 cut(s)	372
TfiI	GAWTC	1 cut(s)	346
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TseI	GCWGC	2 cut(s)	445, 474
TspGWI	ACGGA	2 cut(s)	120, 474
Tth111I	GACNNNGTC	3 cut(s)	130, 287, 383
VpaK11BI	GGWCC	1 cut(s)	394
XmiI	GTMKAC	2 cut(s)	17, 291
XspI	CTAG	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.