Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0020001

Physical Location & Seq

Genomic Coordinates Reverse (-)

52625319 .. 52625645

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG370200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGACCCAACTCCCCAACAGCCCTAACTCCCAAACTACACCTCTCCCCCAGACCTCGACCGTCGCCACCGCGCTTGACAAGTTCTACTCTGAGTTCCACTGCATTTCGGAGTTCTTCCACACCGTGTTAGCGAAGAGGATTCAGAATTGCGAGGGTGGAAGAGGCGACGAGAATGGCGTCGTTTCTGACCCGGAGTCCGGCGTGATTGTTCCCTTGGAGAAGAGCGGCGAGCAGCAGCATCTGGCGGAGGTCGTGCAGCGGAAGAAGTACCCACAGCAATTGAAAGAGCTCGTCCGGGTCACCGATCTCGTTGGGTTTCAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000775 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0009292 GO:0009294 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019222 GO:0019538 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0034641 GO:0036211 GO:0040029 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0044764 GO:0046483 GO:0048519 GO:0050789 GO:0051276 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080188 GO:0090304 GO:0098687 GO:0140096 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

108

Amino Acids

12.05

Weight (kDa)

5.53

Isoelectric Point (pI)

35.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020001)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008319
rosa_multiflora	Rmu_sc0001336.1_g000011
rosa_samantha	Rh2AG524300 Rh2CG509000 Rh2DG370200 Rh5AG431400 Rh6AG298200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	225
AccII	CGCG	1 cut(s)	71
AciI	CCGC	4 cut(s)	69, 225, 245, 259
AcyI	GRCGYC	1 cut(s)	177
AdeI	CACNNNGTG	1 cut(s)	124
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	1 cut(s)	197
AgsI	TTSAA	2 cut(s)	283, 320
AhdI	GACNNNNNGTC	1 cut(s)	193
AluBI	AGCT	1 cut(s)	289
AluI	AGCT	1 cut(s)	289
Alw21I	GWGCWC	1 cut(s)	291
AlwNI	CAGNNNCTG	1 cut(s)	241
ApeKI	GCWGC	3 cut(s)	232, 235, 256
AspLEI	GCGC	1 cut(s)	73
AsuC2I	CCSGG	2 cut(s)	191, 296
AsuHPI	GGTGA	1 cut(s)	292
BanII	GRGCYC	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	291
BbvI	GCAGC	3 cut(s)	244, 247, 268
BcnI	CCSGG	2 cut(s)	191, 296
BisI	GCNGC	4 cut(s)	226, 233, 236, 257
BlsI	GCNGC	4 cut(s)	227, 234, 237, 258
Bme1390I	CCNGG	2 cut(s)	191, 296
BmeRI	GACNNNNNGTC	1 cut(s)	193
BmrFI	CCNGG	2 cut(s)	191, 296
BmsI	GCATC	1 cut(s)	247
BpuMI	CCSGG	2 cut(s)	191, 296
BsaHI	GRCGYC	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
BseDI	CCNNGG	1 cut(s)	213
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMII	CTCAG	1 cut(s)	81
BseXI	GCAGC	3 cut(s)	244, 247, 268
BsgI	GTGCAG	1 cut(s)	275
Bsh1236I	CGCG	1 cut(s)	71
Bsh1285I	CGRYCG	1 cut(s)	60
BsiEI	CGRYCG	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	291
BsiSI	CCGG	3 cut(s)	191, 198, 295
BslI	CCNNNNNNNGG	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	1 cut(s)	304
BspACI	CCGC	4 cut(s)	69, 225, 245, 259
BspCNI	CTCAG	1 cut(s)	82
BspFNI	CGCG	1 cut(s)	71
BspQI	GCTCTTC	1 cut(s)	215
BsrBI	CCGCTC	1 cut(s)	225
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	1 cut(s)	304
BssNI	GRCGYC	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	213
Bst4CI	ACNGT	2 cut(s)	61, 124
Bst6I	CTCTTC	3 cut(s)	128, 154, 215
BstACI	GRCGYC	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	230
BstDEI	CTNAG	1 cut(s)	90
BstEII	GGTNACC	1 cut(s)	298
BstFNI	CGCG	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	1 cut(s)	307
BstMBI	GATC	1 cut(s)	304
BstMCI	CGRYCG	1 cut(s)	60
BstPI	GGTNACC	1 cut(s)	298
BstSCI	CCNGG	2 cut(s)	189, 294
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	3 cut(s)	244, 247, 268
BtsI	GCAGTG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	97
Cac8I	GCNNGC	1 cut(s)	230
CaiI	CAGNNNCTG	1 cut(s)	241
CfoI	GCGC	1 cut(s)	73
CseI	GACGC	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	268
CspCI	CAANNNNNGTGG	4 cut(s)	55, 90, 261, 296
CviJI	RGCY	2 cut(s)	21, 289
CviKI_1	RGCY	2 cut(s)	21, 289
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
DraIII	CACNNNGTG	1 cut(s)	124
DriI	GACNNNNNGTC	1 cut(s)	193
Eam1104I	CTCTTC	3 cut(s)	128, 154, 215
Eam1105I	GACNNNNNGTC	1 cut(s)	193
EarI	CTCTTC	3 cut(s)	128, 154, 215
EciI	GGCGGA	1 cut(s)	260
Ecl136II	GAGCTC	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	213
Eco24I	GRGCYC	1 cut(s)	291
Eco53kI	GAGCTC	1 cut(s)	289
Eco91I	GGTNACC	1 cut(s)	298
EcoICRI	GAGCTC	1 cut(s)	289
EcoO65I	GGTNACC	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	213
EcoT38I	GRGCYC	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	213
Fnu4HI	GCNGC	4 cut(s)	226, 233, 236, 257
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	4 cut(s)	226, 233, 236, 257
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	4 cut(s)	226, 233, 236, 257
HapII	CCGG	3 cut(s)	191, 198, 295
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	1 cut(s)	73
Hin1I	GRCGYC	1 cut(s)	177
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HinfI	GANTC	2 cut(s)	139, 194
HpaII	CCGG	3 cut(s)	191, 198, 295
HphI	GGTGA	1 cut(s)	292
Hpy188I	TCNGA	4 cut(s)	91, 109, 144, 187
Hpy99I	CGWCG	3 cut(s)	65, 170, 182
HpyCH4III	ACNGT	2 cut(s)	61, 124
HpyCH4V	TGCA	2 cut(s)	102, 256
HpyF3I	CTNAG	1 cut(s)	90
Hsp92I	GRCGYC	1 cut(s)	177
HspAI	GCGC	1 cut(s)	71
Kzo9I	GATC	1 cut(s)	304
LguI	GCTCTTC	1 cut(s)	215
LpnPI	CCDG	5 cut(s)	62, 204, 211, 227, 308
Lsp1109I	GCAGC	3 cut(s)	244, 247, 268
LweI	GCATC	1 cut(s)	247
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	1 cut(s)	306
MbiI	CCGCTC	1 cut(s)	225
MboI	GATC	1 cut(s)	304
MboII	GAAGA	5 cut(s)	106, 145, 171, 232, 274
MfeI	CAATTG	1 cut(s)	278
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	3 cut(s)	145, 278, 320
MlyI	GAGTC	1 cut(s)	203
MnlI	CCTC	6 cut(s)	51, 64, 129, 145, 155, 241
MspA1I	CMGCKG	1 cut(s)	259
MspI	CCGG	3 cut(s)	191, 198, 295
MspR9I	CCNGG	2 cut(s)	191, 296
MunI	CAATTG	1 cut(s)	278
MvnI	CGCG	1 cut(s)	71
NciI	CCSGG	2 cut(s)	191, 296
NdeII	GATC	1 cut(s)	304
NmuCI	GTSAC	1 cut(s)	298
PciSI	GCTCTTC	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	139
PkrI	GCNGC	4 cut(s)	227, 234, 237, 258
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
Psp124BI	GAGCTC	1 cut(s)	291
PspEI	GGTNACC	1 cut(s)	298
PstNI	CAGNNNCTG	1 cut(s)	241
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SacI	GAGCTC	1 cut(s)	291
SapI	GCTCTTC	1 cut(s)	215
SatI	GCNGC	4 cut(s)	226, 233, 236, 257
Sau3AI	GATC	1 cut(s)	304
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	2 cut(s)	191, 296
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	4 cut(s)	43, 56, 252, 291
SfaNI	GCATC	1 cut(s)	247
Sse9I	AATT	3 cut(s)	145, 278, 320
SsiI	CCGC	4 cut(s)	69, 225, 245, 259
SstI	GAGCTC	1 cut(s)	291
StyD4I	CCNGG	2 cut(s)	189, 294
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	2 cut(s)	61, 124
TaqI	TCGA	1 cut(s)	56
TasI	AATT	3 cut(s)	145, 278, 320
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	1 cut(s)	139
TscAI	CASTG	1 cut(s)	104
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	3 cut(s)	232, 235, 256
Tsp45I	GTSAC	1 cut(s)	298
TspRI	CASTG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.