Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0020001

Physical Location & Seq

Genomic Coordinates Reverse (-)

68122359 .. 68133739

Gene Structure 11381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG509000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGACCCAACTCCCCAACAGCCCCAACTCCCAAACTACACCTCTCCCCCAGACCTCGATCGTCGCCACCGCGCTTGACAACTTATACTCTGAGTTCCACTGCATTTCGGAGTTCTTCCACACCGCATTAGCGAAGAGGATTCAGAATTACGACGGTGGAAGAGGCGACGAGAACGGCGTCGTTTCGGACCCGGAGTCTGGCGCGATTGTTCCCGTGGAGAAGAGCGGCGAGCAGCAGCAGCTGGCGGAGGTCGTGCAGTGGAAGAAGTACCCACAACGATTGAAAGAGCTCGTCCGGAATAATCTTCTTCTCTTGAATCAATCCCCATTTCAGAGACCGCAGAAGGTTTGCAGAAAAAGCCAAAGTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000775 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0009292 GO:0009294 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019222 GO:0019538 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0034641 GO:0036211 GO:0040029 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0044764 GO:0046483 GO:0048519 GO:0050789 GO:0051276 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080188 GO:0090304 GO:0098687 GO:0140096 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

123

Amino Acids

13.82

Weight (kDa)

7.79

Isoelectric Point (pI)

51.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020001)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008319
rosa_multiflora	Rmu_sc0001336.1_g000011
rosa_samantha	Rh2AG524300 Rh2CG509000 Rh2DG370200 Rh5AG431400 Rh6AG298200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	225
AccII	CGCG	2 cut(s)	71, 203
AccIII	TCCGGA	1 cut(s)	294
AciI	CCGC	5 cut(s)	69, 123, 225, 245, 338
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	1 cut(s)	197
AgsI	TTSAA	2 cut(s)	283, 316
AhdI	GACNNNNNGTC	1 cut(s)	193
AluBI	AGCT	2 cut(s)	241, 289
AluI	AGCT	2 cut(s)	241, 289
Alw21I	GWGCWC	1 cut(s)	291
Alw26I	GTCTC	1 cut(s)	328
AlwNI	CAGNNNCTG	1 cut(s)	241
Aor13HI	TCCGGA	1 cut(s)	294
ApeKI	GCWGC	3 cut(s)	232, 235, 238
AspLEI	GCGC	2 cut(s)	73, 203
AspS9I	GGNCC	1 cut(s)	187
AsuC2I	CCSGG	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	187
BanII	GRGCYC	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	291
BbvI	GCAGC	3 cut(s)	244, 247, 250
BceAI	ACGGC	1 cut(s)	190
BcnI	CCSGG	1 cut(s)	191
BcoDI	GTCTC	1 cut(s)	328
BisI	GCNGC	4 cut(s)	226, 233, 236, 239
BlsI	GCNGC	4 cut(s)	227, 234, 237, 240
Bme1390I	CCNGG	1 cut(s)	191
Bme18I	GGWCC	1 cut(s)	187
BmeRI	GACNNNNNGTC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	187
BmiI	GGNNCC	1 cut(s)	189
BmrFI	CCNGG	1 cut(s)	191
BpuMI	CCSGG	1 cut(s)	191
BsaHI	GRCGYC	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	328
BsaJI	CCNNGG	1 cut(s)	213
BsaWI	WCCGGW	1 cut(s)	294
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
BseAI	TCCGGA	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	213
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMII	CTCAG	1 cut(s)	81
BseXI	GCAGC	3 cut(s)	244, 247, 250
BsgI	GTGCAG	1 cut(s)	275
Bsh1236I	CGCG	2 cut(s)	71, 203
Bsh1285I	CGRYCG	1 cut(s)	60
BsiEI	CGRYCG	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	291
BsiSI	CCGG	2 cut(s)	191, 295
BslI	CCNNNNNNNGG	1 cut(s)	197
BsmAI	GTCTC	1 cut(s)	328
Bso31I	GGTCTC	1 cut(s)	328
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp13I	TCCGGA	1 cut(s)	294
Bsp143I	GATC	1 cut(s)	57
BspACI	CCGC	5 cut(s)	69, 123, 225, 245, 338
BspCNI	CTCAG	1 cut(s)	82
BspEI	TCCGGA	1 cut(s)	294
BspFNI	CGCG	2 cut(s)	71, 203
BspLI	GGNNCC	1 cut(s)	189
BspQI	GCTCTTC	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	328
BsrBI	CCGCTC	1 cut(s)	225
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	1 cut(s)	57
BssNI	GRCGYC	1 cut(s)	177
Bst4CI	ACNGT	1 cut(s)	155
Bst6I	CTCTTC	3 cut(s)	128, 154, 215
BstACI	GRCGYC	1 cut(s)	177
BstC8I	GCNNGC	2 cut(s)	230, 243
BstDEI	CTNAG	1 cut(s)	90
BstDSI	CCRYGG	1 cut(s)	213
BstFNI	CGCG	2 cut(s)	71, 203
BstHHI	GCGC	2 cut(s)	73, 203
BstKTI	GATC	1 cut(s)	60
BstMAI	GTCTC	1 cut(s)	328
BstMBI	GATC	1 cut(s)	57
BstMCI	CGRYCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	2 cut(s)	238, 357
BstSCI	CCNGG	1 cut(s)	189
BstUI	CGCG	2 cut(s)	71, 203
BstV1I	GCAGC	3 cut(s)	244, 247, 250
BtgI	CCRYGG	1 cut(s)	213
BtsI	GCAGTG	2 cut(s)	97, 263
BtsIMutI	CAGTG	2 cut(s)	97, 263
Cac8I	GCNNGC	2 cut(s)	230, 243
CaiI	CAGNNNCTG	1 cut(s)	241
CfoI	GCGC	2 cut(s)	73, 203
Cfr13I	GGNCC	1 cut(s)	187
CseI	GACGC	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	268
CspCI	CAANNNNNGTGG	4 cut(s)	55, 90, 261, 296
CviJI	RGCY	4 cut(s)	21, 241, 289, 360
CviKI_1	RGCY	4 cut(s)	21, 241, 289, 360
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	1 cut(s)	59
DpnII	GATC	1 cut(s)	57
DriI	GACNNNNNGTC	1 cut(s)	193
Eam1104I	CTCTTC	3 cut(s)	128, 154, 215
Eam1105I	GACNNNNNGTC	1 cut(s)	193
EarI	CTCTTC	3 cut(s)	128, 154, 215
EciI	GGCGGA	1 cut(s)	260
Ecl136II	GAGCTC	1 cut(s)	289
Eco24I	GRGCYC	1 cut(s)	291
Eco31I	GGTCTC	1 cut(s)	328
Eco47I	GGWCC	1 cut(s)	187
Eco53kI	GAGCTC	1 cut(s)	289
EcoICRI	GAGCTC	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	291
FaiI	YATR	1 cut(s)	85
Fnu4HI	GCNGC	4 cut(s)	226, 233, 236, 239
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	4 cut(s)	226, 233, 236, 239
GlaI	GCGC	2 cut(s)	72, 202
GluI	GCNGC	4 cut(s)	226, 233, 236, 239
HapII	CCGG	2 cut(s)	191, 295
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	2 cut(s)	73, 203
Hin1I	GRCGYC	1 cut(s)	177
Hin6I	GCGC	2 cut(s)	71, 201
HinP1I	GCGC	2 cut(s)	71, 201
HinfI	GANTC	3 cut(s)	139, 194, 316
HpaII	CCGG	2 cut(s)	191, 295
Hpy188I	TCNGA	6 cut(s)	91, 109, 144, 187, 333, 371
Hpy188III	TCNNGA	2 cut(s)	295, 313
Hpy99I	CGWCG	4 cut(s)	65, 155, 170, 182
HpyAV	CCTTC	1 cut(s)	337
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4V	TGCA	3 cut(s)	102, 256, 351
HpyF10VI	GCNNNNNNNGC	2 cut(s)	238, 357
HpyF3I	CTNAG	1 cut(s)	90
Hsp92I	GRCGYC	1 cut(s)	177
HspAI	GCGC	2 cut(s)	71, 201
Kpn2I	TCCGGA	1 cut(s)	294
Kzo9I	GATC	1 cut(s)	57
LguI	GCTCTTC	1 cut(s)	215
LpnPI	CCDG	5 cut(s)	62, 183, 204, 227, 308
Lsp1109I	GCAGC	3 cut(s)	244, 247, 250
MalI	GATC	1 cut(s)	59
MbiI	CCGCTC	1 cut(s)	225
MboI	GATC	1 cut(s)	57
MboII	GAAGA	7 cut(s)	106, 145, 171, 232, 274, 296, 299
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	1 cut(s)	145
MlyI	GAGTC	1 cut(s)	203
MnlI	CCTC	5 cut(s)	51, 64, 129, 155, 241
MroI	TCCGGA	1 cut(s)	294
MspA1I	CMGCKG	1 cut(s)	241
MspI	CCGG	2 cut(s)	191, 295
MspR9I	CCNGG	1 cut(s)	191
MvnI	CGCG	2 cut(s)	71, 203
MwoI	GCNNNNNNNGC	2 cut(s)	238, 357
NciI	CCSGG	1 cut(s)	191
NdeII	GATC	1 cut(s)	57
NlaIV	GGNNCC	1 cut(s)	189
PciSI	GCTCTTC	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PfeI	GAWTC	2 cut(s)	139, 316
PkrI	GCNGC	4 cut(s)	227, 234, 237, 240
Ple19I	CGATCG	1 cut(s)	60
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
Psp124BI	GAGCTC	1 cut(s)	291
PspN4I	GGNNCC	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	187
PstNI	CAGNNNCTG	1 cut(s)	241
PvuI	CGATCG	1 cut(s)	60
PvuII	CAGCTG	1 cut(s)	241
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SacI	GAGCTC	1 cut(s)	291
SapI	GCTCTTC	1 cut(s)	215
SatI	GCNGC	4 cut(s)	226, 233, 236, 239
Sau3AI	GATC	1 cut(s)	57
Sau96I	GGNCC	1 cut(s)	187
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	1 cut(s)	191
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	6 cut(s)	43, 56, 243, 252, 291, 348
SinI	GGWCC	1 cut(s)	187
Sse9I	AATT	1 cut(s)	145
SsiI	CCGC	5 cut(s)	69, 123, 225, 245, 338
SstI	GAGCTC	1 cut(s)	291
StyD4I	CCNGG	1 cut(s)	189
TaaI	ACNGT	1 cut(s)	155
TaqI	TCGA	1 cut(s)	56
TasI	AATT	1 cut(s)	145
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	2 cut(s)	139, 316
TscAI	CASTG	2 cut(s)	104, 263
TseI	GCWGC	3 cut(s)	232, 235, 238
TspRI	CASTG	2 cut(s)	104, 263
VpaK11BI	GGWCC	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.