Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0019429

Physical Location & Seq

Genomic Coordinates Reverse (-)

31262151 .. 31266424

Gene Structure 4274 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008492

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGTCGACCAAGAAACCCGTGGTCGTGGAATCCTATGATAAGATTGTGTTCCCTGAGCCTTCAGAGAGTTTTTTAGCTCGCGTCCAGAATCACCCTGCTATAGCCTCCCCCAGATTACCTGCTGGTTTGACTCTGCCTCCTCCTGTGCCAGTTGAAGATCCAAGTAAAAGAAAGAGAGGTGACACAAAAGATCATCCCCTGACCCAGTGGTTCATGAATTTTTCAGAAGCTGATGAGCTTCTACAACTGGCTGCAGCTCGTCAGCAAGTTCAAGCTCATATTGCTAAATTTCGAAGAGAGATAAGTTCGATGGATGTGCAACAACAACAAGTGGGTAAAGTGGGAGAGCTTTCTGAGATATTTCAATGGAAAGGTGAAGTTCCAAAGGGCCTTCCTGATTGGAAAGAAGAGGAAAAGCAACACCTGGGTGAAGAGCTCTATGATGTCCTGCTCTATCTGGTCAGGCTCTCTGACATATGTGGTGTTGATCTTGGCAAAGCTGCTCTGCGCAAAGTTGAACTCAATGCCATTAAGTACCCAGTTTCACAGAAACAGAACCAGAACCAGACCAATGGCACCACTAACCCCCACACAACCACCGCCATTAACACCAGCAATGACAATAACAACACAGAAGAGATCACTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009909 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019222 GO:0019538 GO:0031056 GO:0031248 GO:0031323 GO:0031399 GO:0031974 GO:0031981 GO:0032268 GO:0032991 GO:0033043 GO:0033044 GO:0035065 GO:0035267 GO:0036211 GO:0040034 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043981 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051246 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090239 GO:1901564 GO:1901983 GO:1902275 GO:1902493 GO:1902494 GO:1902562 GO:1990234 GO:2000026 GO:2000028 GO:2000241 GO:2000756

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YEATS

Protein Analysis

217

Amino Acids

24.24

Weight (kDa)

5.78

Isoelectric Point (pI)

50.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019429)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0268601 RchiOBHm_Chr6g0268681
rosa_laevigata	RLG00000008492
rosa_multiflora	Rmu_sc0002889.1_g000034
rosa_roxburghii	Rroxscaffold_7G00199700
rosa_samantha	Rh6BG167700 Rh6BG168200
rosa_wichuraiana	Rw5G012320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	509
Acc36I	ACCTGC	1 cut(s)	127
AccB1I	GGYRCC	1 cut(s)	575
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	81
AciI	CCGC	1 cut(s)	600
AclWI	GGATC	1 cut(s)	152
AcsI	RAATTY	2 cut(s)	217, 287
AcuI	CTGAAG	1 cut(s)	45
AfaI	GTAC	1 cut(s)	536
AgsI	TTSAA	4 cut(s)	155, 272, 365, 518
AjnI	CCWGG	1 cut(s)	423
AleI	CACNNNNGTG	1 cut(s)	426
AluBI	AGCT	8 cut(s)	77, 230, 238, 257, 275, 349, 436, 500
AluI	AGCT	8 cut(s)	77, 230, 238, 257, 275, 349, 436, 500
Alw21I	GWGCWC	1 cut(s)	438
AlwI	GGATC	1 cut(s)	152
AlwNI	CAGNNNCTG	1 cut(s)	230
AoxI	GGCC	1 cut(s)	388
ApeKI	GCWGC	3 cut(s)	251, 254, 500
ApoI	RAATTY	2 cut(s)	217, 287
AspLEI	GCGC	1 cut(s)	510
AspS9I	GGNCC	1 cut(s)	388
AsuHPI	GGTGA	4 cut(s)	83, 191, 386, 440
AsuII	TTCGAA	1 cut(s)	292
BanI	GGYRCC	1 cut(s)	575
BanII	GRGCYC	1 cut(s)	438
Bbv12I	GWGCWC	1 cut(s)	438
BbvI	GCAGC	3 cut(s)	238, 266, 487
BccI	CCATC	1 cut(s)	304
BcgI	CGANNNNNNTGC	2 cut(s)	298, 332
BciT130I	CCWGG	1 cut(s)	425
BfmI	CTRYAG	2 cut(s)	99, 252
BfuAI	ACCTGC	1 cut(s)	127
BisI	GCNGC	3 cut(s)	252, 255, 501
BlsI	GCNGC	3 cut(s)	253, 256, 502
Bme1390I	CCNGG	1 cut(s)	425
BmgT120I	GGNCC	1 cut(s)	388
BmiI	GGNNCC	1 cut(s)	577
BmrFI	CCNGG	1 cut(s)	425
BmrI	ACTGGG	2 cut(s)	199, 533
BmuI	ACTGGG	2 cut(s)	199, 533
Bpu10I	CCTNAGC	1 cut(s)	54
Bpu14I	TTCGAA	1 cut(s)	292
BsaJI	CCNNGG	2 cut(s)	18, 424
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bse1I	ACTGG	5 cut(s)	149, 205, 252, 539, 649
Bse3DI	GCAATG	1 cut(s)	622
BseBI	CCWGG	1 cut(s)	425
BseDI	CCNNGG	2 cut(s)	18, 424
BseGI	GGATG	2 cut(s)	193, 319
BseMI	GCAATG	1 cut(s)	622
BseMII	CTCAG	2 cut(s)	45, 345
BseNI	ACTGG	5 cut(s)	149, 205, 252, 539, 649
BseRI	GAGGAG	1 cut(s)	129
BseXI	GCAGC	3 cut(s)	238, 266, 487
Bsh1236I	CGCG	1 cut(s)	81
BshFI	GGCC	1 cut(s)	390
BshNI	GGYRCC	1 cut(s)	575
BsiHKAI	GWGCWC	1 cut(s)	438
BsnI	GGCC	1 cut(s)	390
Bsp119I	TTCGAA	1 cut(s)	292
Bsp1286I	GDGCHC	1 cut(s)	438
Bsp143I	GATC	4 cut(s)	157, 190, 487, 639
BspACI	CCGC	1 cut(s)	600
BspANI	GGCC	1 cut(s)	390
BspCNI	CTCAG	2 cut(s)	46, 346
BspFNI	CGCG	1 cut(s)	81
BspHI	TCATGA	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	577
BspMAI	CTGCAG	1 cut(s)	256
BspMI	ACCTGC	1 cut(s)	127
BspPI	GGATC	1 cut(s)	152
BspQI	GCTCTTC	1 cut(s)	426
BspT104I	TTCGAA	1 cut(s)	292
BspT107I	GGYRCC	1 cut(s)	575
BsrDI	GCAATG	1 cut(s)	622
BsrI	ACTGG	5 cut(s)	149, 205, 252, 539, 649
BssECI	CCNNGG	2 cut(s)	18, 424
BssMI	GATC	4 cut(s)	157, 190, 487, 639
Bst2UI	CCWGG	1 cut(s)	425
Bst6I	CTCTTC	4 cut(s)	289, 402, 426, 630
BstBI	TTCGAA	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	2 cut(s)	54, 354
BstDSI	CCRYGG	1 cut(s)	18
BstF5I	GGATG	2 cut(s)	193, 319
BstFNI	CGCG	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	510
BstKTI	GATC	4 cut(s)	160, 193, 490, 642
BstMBI	GATC	4 cut(s)	157, 190, 487, 639
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNI	CCWGG	1 cut(s)	425
BstSCI	CCNGG	1 cut(s)	423
BstSFI	CTRYAG	2 cut(s)	99, 252
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	3 cut(s)	238, 266, 487
BstX2I	RGATCY	1 cut(s)	157
BstXI	CCANNNNNNTGG	1 cut(s)	572
BstYI	RGATCY	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	390
BtgI	CCRYGG	1 cut(s)	18
BtsCI	GGATG	2 cut(s)	193, 319
BtsIMutI	CAGTG	2 cut(s)	212, 642
BveI	ACCTGC	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	79
CaiI	CAGNNNCTG	1 cut(s)	230
CciI	TCATGA	1 cut(s)	213
CfoI	GCGC	1 cut(s)	510
Cfr13I	GGNCC	1 cut(s)	388
CseI	GACGC	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	535
CviAII	CATG	1 cut(s)	214
CviQI	GTAC	1 cut(s)	535
DdeI	CTNAG	2 cut(s)	54, 354
DpnI	GATC	4 cut(s)	159, 192, 489, 641
DpnII	GATC	4 cut(s)	157, 190, 487, 639
Eam1104I	CTCTTC	4 cut(s)	289, 402, 426, 630
EarI	CTCTTC	4 cut(s)	289, 402, 426, 630
Ecl136II	GAGCTC	1 cut(s)	436
Eco24I	GRGCYC	1 cut(s)	438
Eco53kI	GAGCTC	1 cut(s)	436
Eco57I	CTGAAG	1 cut(s)	45
EcoICRI	GAGCTC	1 cut(s)	436
EcoO109I	RGGNCCY	1 cut(s)	388
EcoRII	CCWGG	1 cut(s)	423
EcoT38I	GRGCYC	1 cut(s)	438
FaeI	CATG	1 cut(s)	217
FaiI	YATR	7 cut(s)	36, 101, 215, 279, 441, 476, 478
FatI	CATG	1 cut(s)	213
FauNDI	CATATG	1 cut(s)	476
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	3 cut(s)	252, 255, 501
FokI	GGATG	2 cut(s)	180, 326
FriOI	GRGCYC	1 cut(s)	438
Fsp4HI	GCNGC	3 cut(s)	252, 255, 501
FspI	TGCGCA	1 cut(s)	509
GlaI	GCGC	1 cut(s)	509
GluI	GCNGC	3 cut(s)	252, 255, 501
HaeIII	GGCC	1 cut(s)	390
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	1 cut(s)	510
Hin1II	CATG	1 cut(s)	217
Hin6I	GCGC	1 cut(s)	508
HinP1I	GCGC	1 cut(s)	508
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	3 cut(s)	29, 88, 130
HphI	GGTGA	4 cut(s)	83, 191, 386, 440
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	4 cut(s)	64, 226, 355, 472
Hpy188III	TCNNGA	3 cut(s)	85, 214, 395
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	2 cut(s)	69, 401
HpyCH4V	TGCA	2 cut(s)	254, 319
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	2 cut(s)	54, 354
Hsp92II	CATG	1 cut(s)	217
HspAI	GCGC	1 cut(s)	508
Kzo9I	GATC	4 cut(s)	157, 190, 487, 639
LguI	GCTCTTC	1 cut(s)	426
Lsp1109I	GCAGC	3 cut(s)	238, 266, 487
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	4 cut(s)	159, 192, 489, 641
MboI	GATC	4 cut(s)	157, 190, 487, 639
MboII	GAAGA	5 cut(s)	167, 306, 419, 443, 647
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	1 cut(s)	438
MluCI	AATT	2 cut(s)	217, 287
MlyI	GAGTC	1 cut(s)	124
MnlI	CCTC	5 cut(s)	115, 147, 150, 170, 403
MseI	TTAA	2 cut(s)	531, 606
MslI	CAYNNNNRTG	1 cut(s)	426
MspR9I	CCNGG	1 cut(s)	425
MvaI	CCWGG	1 cut(s)	425
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	1 cut(s)	281
NdeI	CATATG	1 cut(s)	476
NdeII	GATC	4 cut(s)	157, 190, 487, 639
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	1 cut(s)	577
NmuCI	GTSAC	1 cut(s)	179
NsbI	TGCGCA	1 cut(s)	509
NspV	TTCGAA	1 cut(s)	292
OliI	CACNNNNGTG	1 cut(s)	426
PagI	TCATGA	1 cut(s)	213
PciSI	GCTCTTC	1 cut(s)	426
PfeI	GAWTC	2 cut(s)	29, 88
PkrI	GCNGC	3 cut(s)	253, 256, 502
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
Psp124BI	GAGCTC	1 cut(s)	438
Psp6I	CCWGG	1 cut(s)	423
PspGI	CCWGG	1 cut(s)	423
PspN4I	GGNNCC	1 cut(s)	577
PspPI	GGNCC	1 cut(s)	388
PstI	CTGCAG	1 cut(s)	256
PstNI	CAGNNNCTG	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	157
RsaI	GTAC	1 cut(s)	536
RsaNI	GTAC	1 cut(s)	535
RseI	CAYNNNNRTG	1 cut(s)	426
SacI	GAGCTC	1 cut(s)	438
SalI	GTCGAC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	426
SaqAI	TTAA	2 cut(s)	531, 606
SatI	GCNGC	3 cut(s)	252, 255, 501
Sau3AI	GATC	4 cut(s)	157, 190, 487, 639
Sau96I	GGNCC	1 cut(s)	388
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	425
SduI	GDGCHC	1 cut(s)	438
SfcI	CTRYAG	2 cut(s)	99, 252
SfuI	TTCGAA	1 cut(s)	292
SmiMI	CAYNNNNRTG	1 cut(s)	426
Sse9I	AATT	2 cut(s)	217, 287
SsiI	CCGC	1 cut(s)	600
SstI	GAGCTC	1 cut(s)	438
StyD4I	CCNGG	1 cut(s)	423
TaqI	TCGA	3 cut(s)	5, 292, 308
TasI	AATT	2 cut(s)	217, 287
TfiI	GAWTC	2 cut(s)	29, 88
Tru1I	TTAA	2 cut(s)	531, 606
Tru9I	TTAA	2 cut(s)	531, 606
TscAI	CASTG	2 cut(s)	212, 649
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	3 cut(s)	251, 254, 500
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	2 cut(s)	202, 230
TspRI	CASTG	2 cut(s)	212, 649
XapI	RAATTY	2 cut(s)	217, 287
XcmI	CCANNNNNNNNNTGG	1 cut(s)	16
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.