Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0019429

Physical Location & Seq

Genomic Coordinates Forward (+)

46788882 .. 46792198

Gene Structure 3317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00199700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGTCGACCAAGAAACCCGTGGTCGTGGAATCCTATGATGAGATTGTGTTCCCTGAGCCTTCAGAGAGTTTTTTAGCTCGCGTCCAGAATCACCCTGCTATAGCCTCCCCCAGATTACCTGCTGGTTTGACTCTGCCTCCTCCTGAGCCAGTTGAAGATCCAAGTAAAAGAAAGAGAGGTGACACAAAAGATCATCCGCTGGCCCAGTGGTTCATGAATTTTTCAGAAGCTGATGAGCTTCTACAACTAGCTGCAGCTCGTCAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009909 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019222 GO:0019538 GO:0031056 GO:0031248 GO:0031323 GO:0031399 GO:0031974 GO:0031981 GO:0032268 GO:0032991 GO:0033043 GO:0033044 GO:0035065 GO:0035267 GO:0036211 GO:0040034 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043981 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051246 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090239 GO:1901564 GO:1901983 GO:1902275 GO:1902493 GO:1902494 GO:1902562 GO:1990234 GO:2000026 GO:2000028 GO:2000241 GO:2000756

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YEATS

Protein Analysis

89

Amino Acids

9.95

Weight (kDa)

5.27

Isoelectric Point (pI)

74.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019429)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0268601 RchiOBHm_Chr6g0268681
rosa_laevigata	RLG00000008492
rosa_multiflora	Rmu_sc0002889.1_g000034
rosa_roxburghii	Rroxscaffold_7G00199700
rosa_samantha	Rh6BG167700 Rh6BG168200
rosa_wichuraiana	Rw5G012320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	127
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	81
AciI	CCGC	1 cut(s)	197
AclWI	GGATC	1 cut(s)	152
AcsI	RAATTY	1 cut(s)	217
AcuI	CTGAAG	1 cut(s)	45
AgsI	TTSAA	1 cut(s)	155
AluBI	AGCT	5 cut(s)	77, 230, 238, 251, 257
AluI	AGCT	5 cut(s)	77, 230, 238, 251, 257
AlwI	GGATC	1 cut(s)	152
AlwNI	CAGNNNCTG	1 cut(s)	230
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	2 cut(s)	251, 254
ApoI	RAATTY	1 cut(s)	217
AspS9I	GGNCC	1 cut(s)	202
AsuHPI	GGTGA	2 cut(s)	83, 191
BbvI	GCAGC	2 cut(s)	238, 266
BfaI	CTAG	1 cut(s)	248
BfmI	CTRYAG	2 cut(s)	99, 252
BfuAI	ACCTGC	1 cut(s)	127
BisI	GCNGC	2 cut(s)	252, 255
BlsI	GCNGC	2 cut(s)	253, 256
BmgT120I	GGNCC	1 cut(s)	202
BmrI	ACTGGG	1 cut(s)	199
BmuI	ACTGGG	1 cut(s)	199
Bpu10I	CCTNAGC	2 cut(s)	54, 144
BsaJI	CCNNGG	1 cut(s)	18
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bse1I	ACTGG	2 cut(s)	149, 205
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	1 cut(s)	193
BseMII	CTCAG	2 cut(s)	45, 135
BseNI	ACTGG	2 cut(s)	149, 205
BseRI	GAGGAG	1 cut(s)	129
BseXI	GCAGC	2 cut(s)	238, 266
Bsh1236I	CGCG	1 cut(s)	81
BshFI	GGCC	1 cut(s)	203
BsnI	GGCC	1 cut(s)	203
Bsp143I	GATC	2 cut(s)	157, 190
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	2 cut(s)	46, 136
BspFNI	CGCG	1 cut(s)	81
BspHI	TCATGA	1 cut(s)	213
BspMAI	CTGCAG	1 cut(s)	256
BspMI	ACCTGC	1 cut(s)	127
BspPI	GGATC	1 cut(s)	152
BsrI	ACTGG	2 cut(s)	149, 205
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	2 cut(s)	157, 190
BstC8I	GCNNGC	2 cut(s)	79, 201
BstDEI	CTNAG	2 cut(s)	54, 144
BstDSI	CCRYGG	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	193
BstFNI	CGCG	1 cut(s)	81
BstKTI	GATC	2 cut(s)	160, 193
BstMBI	GATC	2 cut(s)	157, 190
BstSFI	CTRYAG	2 cut(s)	99, 252
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	2 cut(s)	238, 266
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	203
BtgI	CCRYGG	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	212
BveI	ACCTGC	1 cut(s)	127
Cac8I	GCNNGC	2 cut(s)	79, 201
CaiI	CAGNNNCTG	1 cut(s)	230
CciI	TCATGA	1 cut(s)	213
Cfr13I	GGNCC	1 cut(s)	202
CseI	GACGC	1 cut(s)	70
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	9 cut(s)	58, 77, 104, 148, 203, 230, 238, 251, 257
CviKI_1	RGCY	9 cut(s)	58, 77, 104, 148, 203, 230, 238, 251, 257
DdeI	CTNAG	2 cut(s)	54, 144
DpnI	GATC	2 cut(s)	159, 192
DpnII	GATC	2 cut(s)	157, 190
Eco57I	CTGAAG	1 cut(s)	45
FaeI	CATG	1 cut(s)	217
FaiI	YATR	3 cut(s)	36, 101, 215
FatI	CATG	1 cut(s)	213
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	252, 255
FokI	GGATG	1 cut(s)	180
Fsp4HI	GCNGC	2 cut(s)	252, 255
FspBI	CTAG	1 cut(s)	248
GluI	GCNGC	2 cut(s)	252, 255
HaeIII	GGCC	1 cut(s)	203
HgaI	GACGC	1 cut(s)	70
Hin1II	CATG	1 cut(s)	217
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	3 cut(s)	29, 88, 130
HphI	GGTGA	2 cut(s)	83, 191
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	64, 226
Hpy188III	TCNNGA	3 cut(s)	85, 143, 214
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	1 cut(s)	69
HpyCH4V	TGCA	1 cut(s)	254
HpyF3I	CTNAG	2 cut(s)	54, 144
Hsp92II	CATG	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	157, 190
Lsp1109I	GCAGC	2 cut(s)	238, 266
MaeI	CTAG	1 cut(s)	248
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	2 cut(s)	159, 192
MboI	GATC	2 cut(s)	157, 190
MboII	GAAGA	1 cut(s)	167
MflI	RGATCY	1 cut(s)	157
MluCI	AATT	1 cut(s)	217
MlyI	GAGTC	1 cut(s)	124
MnlI	CCTC	4 cut(s)	115, 147, 150, 170
MspA1I	CMGCKG	1 cut(s)	199
MvnI	CGCG	1 cut(s)	81
NdeII	GATC	2 cut(s)	157, 190
NlaIII	CATG	1 cut(s)	217
NmuCI	GTSAC	1 cut(s)	179
PagI	TCATGA	1 cut(s)	213
PfeI	GAWTC	2 cut(s)	29, 88
PkrI	GCNGC	2 cut(s)	253, 256
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PspPI	GGNCC	1 cut(s)	202
PstI	CTGCAG	1 cut(s)	256
PstNI	CAGNNNCTG	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	157
SalI	GTCGAC	1 cut(s)	4
SatI	GCNGC	2 cut(s)	252, 255
Sau3AI	GATC	2 cut(s)	157, 190
Sau96I	GGNCC	1 cut(s)	202
SchI	GAGTC	1 cut(s)	124
SetI	ASST	7 cut(s)	79, 121, 181, 232, 240, 253, 259
SfcI	CTRYAG	2 cut(s)	99, 252
Sse9I	AATT	1 cut(s)	217
SsiI	CCGC	1 cut(s)	197
SspMI	CTAG	1 cut(s)	248
TaqI	TCGA	1 cut(s)	5
TasI	AATT	1 cut(s)	217
TfiI	GAWTC	2 cut(s)	29, 88
TscAI	CASTG	1 cut(s)	212
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	2 cut(s)	251, 254
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	2 cut(s)	202, 230
TspRI	CASTG	1 cut(s)	212
XapI	RAATTY	1 cut(s)	217
XcmI	CCANNNNNNNNNTGG	1 cut(s)	16
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.