Transcription initiation factor TFIID subunit
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0268601 RchiOBHm_Chr6g0268681 |
| rosa_laevigata | RLG00000008492 |
| rosa_multiflora | Rmu_sc0002889.1_g000034 |
| rosa_roxburghii | Rroxscaffold_7G00199700 |
| rosa_samantha | Rh6BG167700 Rh6BG168200 |
| rosa_wichuraiana | Rw5G012320 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 103 |
| AclWI | GGATC | 1 cut(s) | 107 |
| AcsI | RAATTY | 1 cut(s) | 243 |
| AcuI | CTGAAG | 1 cut(s) | 21 |
| AgsI | TTSAA | 2 cut(s) | 110, 284 |
| AluBI | AGCT | 5 cut(s) | 53, 185, 300, 309, 330 |
| AluI | AGCT | 5 cut(s) | 53, 185, 300, 309, 330 |
| AlwI | GGATC | 1 cut(s) | 107 |
| ApeKI | GCWGC | 1 cut(s) | 306 |
| ApoI | RAATTY | 1 cut(s) | 243 |
| AsuHPI | GGTGA | 2 cut(s) | 59, 146 |
| BauI | CACGAG | 1 cut(s) | 54 |
| BbvI | GCAGC | 1 cut(s) | 318 |
| BfmI | CTRYAG | 1 cut(s) | 75 |
| BfuAI | ACCTGC | 1 cut(s) | 103 |
| BisI | GCNGC | 1 cut(s) | 307 |
| BlsI | GCNGC | 1 cut(s) | 308 |
| BmrI | ACTGGG | 1 cut(s) | 154 |
| BmuI | ACTGGG | 1 cut(s) | 154 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 217, 249 |
| Bpu10I | CCTNAGC | 1 cut(s) | 30 |
| Bse1I | ACTGG | 2 cut(s) | 104, 160 |
| BseGI | GGATG | 1 cut(s) | 148 |
| BseMII | CTCAG | 1 cut(s) | 21 |
| BseNI | ACTGG | 2 cut(s) | 104, 160 |
| BseXI | GCAGC | 1 cut(s) | 318 |
| BsgI | GTGCAG | 1 cut(s) | 325 |
| Bsp143I | GATC | 2 cut(s) | 112, 145 |
| BspCNI | CTCAG | 1 cut(s) | 22 |
| BspHI | TCATGA | 1 cut(s) | 168 |
| BspMI | ACCTGC | 1 cut(s) | 103 |
| BspPI | GGATC | 1 cut(s) | 107 |
| BsrI | ACTGG | 2 cut(s) | 104, 160 |
| BssMI | GATC | 2 cut(s) | 112, 145 |
| BssSI | CACGAG | 1 cut(s) | 54 |
| Bst2BI | CACGAG | 1 cut(s) | 54 |
| BstDEI | CTNAG | 1 cut(s) | 30 |
| BstF5I | GGATG | 1 cut(s) | 148 |
| BstKTI | GATC | 2 cut(s) | 115, 148 |
| BstMBI | GATC | 2 cut(s) | 112, 145 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 306 |
| BstSFI | CTRYAG | 1 cut(s) | 75 |
| BstV1I | GCAGC | 1 cut(s) | 318 |
| BstX2I | RGATCY | 1 cut(s) | 112 |
| BstYI | RGATCY | 1 cut(s) | 112 |
| BtsCI | GGATG | 1 cut(s) | 148 |
| BtsIMutI | CAGTG | 1 cut(s) | 167 |
| BveI | ACCTGC | 1 cut(s) | 103 |
| CciI | TCATGA | 1 cut(s) | 168 |
| CviAII | CATG | 2 cut(s) | 169, 294 |
| CviJI | RGCY | 9 cut(s) | 34, 53, 80, 185, 206, 212, 300, 309, 330 |
| CviKI_1 | RGCY | 9 cut(s) | 34, 53, 80, 185, 206, 212, 300, 309, 330 |
| DdeI | CTNAG | 1 cut(s) | 30 |
| DpnI | GATC | 2 cut(s) | 114, 147 |
| DpnII | GATC | 2 cut(s) | 112, 145 |
| Eco57I | CTGAAG | 1 cut(s) | 21 |
| FaeI | CATG | 2 cut(s) | 172, 297 |
| FatI | CATG | 2 cut(s) | 168, 293 |
| Fnu4HI | GCNGC | 1 cut(s) | 307 |
| FokI | GGATG | 1 cut(s) | 135 |
| Fsp4HI | GCNGC | 1 cut(s) | 307 |
| GluI | GCNGC | 1 cut(s) | 307 |
| Hin1II | CATG | 2 cut(s) | 172, 297 |
| HinfI | GANTC | 2 cut(s) | 5, 64 |
| HphI | GGTGA | 2 cut(s) | 59, 146 |
| Hpy188I | TCNGA | 3 cut(s) | 40, 181, 241 |
| Hpy188III | TCNNGA | 3 cut(s) | 61, 169, 249 |
| HpyAV | CCTTC | 1 cut(s) | 45 |
| HpyCH4V | TGCA | 1 cut(s) | 306 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 306 |
| HpyF3I | CTNAG | 1 cut(s) | 30 |
| Hsp92II | CATG | 2 cut(s) | 172, 297 |
| Kzo9I | GATC | 2 cut(s) | 112, 145 |
| LmnI | GCTCC | 1 cut(s) | 297 |
| LpnPI | CCDG | 9 cut(s) | 42, 74, 84, 100, 108, 117, 167, 173, 234 |
| Lsp1109I | GCAGC | 1 cut(s) | 318 |
| MaeIII | GTNAC | 1 cut(s) | 134 |
| MalI | GATC | 2 cut(s) | 114, 147 |
| MboI | GATC | 2 cut(s) | 112, 145 |
| MboII | GAAGA | 1 cut(s) | 122 |
| MfeI | CAATTG | 1 cut(s) | 200 |
| MflI | RGATCY | 1 cut(s) | 112 |
| MluCI | AATT | 2 cut(s) | 200, 243 |
| MnlI | CCTC | 2 cut(s) | 91, 125 |
| MslI | CAYNNNNRTG | 1 cut(s) | 292 |
| MspA1I | CMGCKG | 1 cut(s) | 330 |
| MunI | CAATTG | 1 cut(s) | 200 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 306 |
| NdeII | GATC | 2 cut(s) | 112, 145 |
| NlaIII | CATG | 2 cut(s) | 172, 297 |
| NmuCI | GTSAC | 1 cut(s) | 134 |
| PagI | TCATGA | 1 cut(s) | 168 |
| PfeI | GAWTC | 2 cut(s) | 5, 64 |
| PkrI | GCNGC | 1 cut(s) | 308 |
| PsuI | RGATCY | 1 cut(s) | 112 |
| PvuII | CAGCTG | 1 cut(s) | 330 |
| RseI | CAYNNNNRTG | 1 cut(s) | 292 |
| SatI | GCNGC | 1 cut(s) | 307 |
| Sau3AI | GATC | 2 cut(s) | 112, 145 |
| SetI | ASST | 8 cut(s) | 55, 97, 136, 187, 278, 302, 311, 332 |
| SfcI | CTRYAG | 1 cut(s) | 75 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 292 |
| Sse9I | AATT | 2 cut(s) | 200, 243 |
| TasI | AATT | 2 cut(s) | 200, 243 |
| TfiI | GAWTC | 2 cut(s) | 5, 64 |
| TscAI | CASTG | 1 cut(s) | 167 |
| TseFI | GTSAC | 1 cut(s) | 134 |
| TseI | GCWGC | 1 cut(s) | 306 |
| Tsp45I | GTSAC | 1 cut(s) | 134 |
| TspDTI | ATGAA | 3 cut(s) | 157, 185, 204 |
| TspGWI | ACGGA | 1 cut(s) | 310 |
| TspRI | CASTG | 1 cut(s) | 167 |
| XapI | RAATTY | 1 cut(s) | 243 |