Transcription initiation factor TFIID subunit
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0268601 RchiOBHm_Chr6g0268681 |
| rosa_laevigata | RLG00000008492 |
| rosa_multiflora | Rmu_sc0002889.1_g000034 |
| rosa_roxburghii | Rroxscaffold_7G00199700 |
| rosa_samantha | Rh6BG167700 Rh6BG168200 |
| rosa_wichuraiana | Rw5G012320 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 127 |
| AclWI | GGATC | 1 cut(s) | 152 |
| AcsI | RAATTY | 3 cut(s) | 217, 288, 347 |
| AcuI | CTGAAG | 1 cut(s) | 45 |
| AgsI | TTSAA | 2 cut(s) | 155, 332 |
| AluBI | AGCT | 5 cut(s) | 77, 230, 238, 257, 335 |
| AluI | AGCT | 5 cut(s) | 77, 230, 238, 257, 335 |
| Alw26I | GTCTC | 1 cut(s) | 141 |
| AlwI | GGATC | 1 cut(s) | 152 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 230 |
| ApeKI | GCWGC | 2 cut(s) | 251, 254 |
| ApoI | RAATTY | 3 cut(s) | 217, 288, 347 |
| AsuHPI | GGTGA | 2 cut(s) | 83, 191 |
| BbvI | GCAGC | 2 cut(s) | 238, 266 |
| BccI | CCATC | 1 cut(s) | 364 |
| BcoDI | GTCTC | 1 cut(s) | 141 |
| BfmI | CTRYAG | 2 cut(s) | 99, 252 |
| BfuAI | ACCTGC | 1 cut(s) | 127 |
| BisI | GCNGC | 2 cut(s) | 252, 255 |
| BlsI | GCNGC | 2 cut(s) | 253, 256 |
| BmrI | ACTGGG | 1 cut(s) | 199 |
| BmsI | GCATC | 1 cut(s) | 90 |
| BmuI | ACTGGG | 1 cut(s) | 199 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 262, 294 |
| Bpu10I | CCTNAGC | 1 cut(s) | 54 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 121, 151 |
| Bse1I | ACTGG | 3 cut(s) | 149, 205, 252 |
| BseGI | GGATG | 3 cut(s) | 81, 193, 379 |
| BseMII | CTCAG | 1 cut(s) | 45 |
| BseNI | ACTGG | 3 cut(s) | 149, 205, 252 |
| BseRI | GAGGAG | 1 cut(s) | 129 |
| BseXI | GCAGC | 2 cut(s) | 238, 266 |
| BsmAI | GTCTC | 1 cut(s) | 141 |
| BsmI | GAATGC | 1 cut(s) | 273 |
| Bsp143I | GATC | 2 cut(s) | 157, 190 |
| BspCNI | CTCAG | 1 cut(s) | 46 |
| BspHI | TCATGA | 1 cut(s) | 213 |
| BspMAI | CTGCAG | 1 cut(s) | 256 |
| BspMI | ACCTGC | 1 cut(s) | 127 |
| BspPI | GGATC | 1 cut(s) | 152 |
| BsrI | ACTGG | 3 cut(s) | 149, 205, 252 |
| BssMI | GATC | 2 cut(s) | 157, 190 |
| BstC8I | GCNNGC | 1 cut(s) | 79 |
| BstDEI | CTNAG | 3 cut(s) | 54, 313, 353 |
| BstF5I | GGATG | 3 cut(s) | 81, 193, 379 |
| BstKTI | GATC | 2 cut(s) | 160, 193 |
| BstMAI | GTCTC | 1 cut(s) | 141 |
| BstMBI | GATC | 2 cut(s) | 157, 190 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 341 |
| BstSFI | CTRYAG | 2 cut(s) | 99, 252 |
| BstV1I | GCAGC | 2 cut(s) | 238, 266 |
| BstX2I | RGATCY | 1 cut(s) | 157 |
| BstYI | RGATCY | 1 cut(s) | 157 |
| BtsCI | GGATG | 3 cut(s) | 81, 193, 379 |
| BtsIMutI | CAGTG | 1 cut(s) | 212 |
| BveI | ACCTGC | 1 cut(s) | 127 |
| Cac8I | GCNNGC | 1 cut(s) | 79 |
| CaiI | CAGNNNCTG | 1 cut(s) | 230 |
| CciI | TCATGA | 1 cut(s) | 213 |
| CviAII | CATG | 1 cut(s) | 214 |
| CviJI | RGCY | 8 cut(s) | 58, 77, 104, 230, 238, 251, 257, 335 |
| CviKI_1 | RGCY | 8 cut(s) | 58, 77, 104, 230, 238, 251, 257, 335 |
| DdeI | CTNAG | 3 cut(s) | 54, 313, 353 |
| DpnI | GATC | 2 cut(s) | 159, 192 |
| DpnII | GATC | 2 cut(s) | 157, 190 |
| Eco57I | CTGAAG | 1 cut(s) | 45 |
| FaeI | CATG | 1 cut(s) | 217 |
| FaiI | YATR | 6 cut(s) | 36, 101, 215, 300, 302, 339 |
| FatI | CATG | 1 cut(s) | 213 |
| Fnu4HI | GCNGC | 2 cut(s) | 252, 255 |
| FokI | GGATG | 3 cut(s) | 68, 180, 386 |
| Fsp4HI | GCNGC | 2 cut(s) | 252, 255 |
| GluI | GCNGC | 2 cut(s) | 252, 255 |
| Hin1II | CATG | 1 cut(s) | 217 |
| HincII | GTYRAC | 1 cut(s) | 6 |
| HindII | GTYRAC | 1 cut(s) | 6 |
| HinfI | GANTC | 3 cut(s) | 29, 88, 130 |
| HphI | GGTGA | 2 cut(s) | 83, 191 |
| Hpy166II | GTNNAC | 1 cut(s) | 6 |
| Hpy188I | TCNGA | 3 cut(s) | 64, 226, 286 |
| Hpy188III | TCNNGA | 3 cut(s) | 85, 214, 294 |
| Hpy8I | GTNNAC | 1 cut(s) | 6 |
| HpyAV | CCTTC | 1 cut(s) | 69 |
| HpyCH4V | TGCA | 1 cut(s) | 254 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 341 |
| HpyF3I | CTNAG | 3 cut(s) | 54, 313, 353 |
| Hsp92II | CATG | 1 cut(s) | 217 |
| Kzo9I | GATC | 2 cut(s) | 157, 190 |
| Lsp1109I | GCAGC | 2 cut(s) | 238, 266 |
| LweI | GCATC | 1 cut(s) | 90 |
| MaeIII | GTNAC | 1 cut(s) | 179 |
| MalI | GATC | 2 cut(s) | 159, 192 |
| MboI | GATC | 2 cut(s) | 157, 190 |
| MboII | GAAGA | 1 cut(s) | 167 |
| MflI | RGATCY | 1 cut(s) | 157 |
| MluCI | AATT | 3 cut(s) | 217, 288, 347 |
| MlyI | GAGTC | 1 cut(s) | 124 |
| MnlI | CCTC | 4 cut(s) | 115, 150, 170, 288 |
| Mva1269I | GAATGC | 1 cut(s) | 273 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 341 |
| NdeII | GATC | 2 cut(s) | 157, 190 |
| NlaIII | CATG | 1 cut(s) | 217 |
| NmuCI | GTSAC | 1 cut(s) | 179 |
| PagI | TCATGA | 1 cut(s) | 213 |
| PctI | GAATGC | 1 cut(s) | 273 |
| PfeI | GAWTC | 2 cut(s) | 29, 88 |
| PflFI | GACNNNGTC | 1 cut(s) | 133 |
| PkrI | GCNGC | 2 cut(s) | 253, 256 |
| PleI | GAGTC | 1 cut(s) | 124 |
| PpsI | GAGTC | 1 cut(s) | 124 |
| PstI | CTGCAG | 1 cut(s) | 256 |
| PstNI | CAGNNNCTG | 1 cut(s) | 230 |
| PsuI | RGATCY | 1 cut(s) | 157 |
| PsyI | GACNNNGTC | 1 cut(s) | 133 |
| SatI | GCNGC | 2 cut(s) | 252, 255 |
| Sau3AI | GATC | 2 cut(s) | 157, 190 |
| SchI | GAGTC | 1 cut(s) | 124 |
| SetI | ASST | 8 cut(s) | 19, 79, 121, 181, 232, 240, 259, 337 |
| SfaNI | GCATC | 1 cut(s) | 90 |
| SfcI | CTRYAG | 2 cut(s) | 99, 252 |
| Sse9I | AATT | 3 cut(s) | 217, 288, 347 |
| TasI | AATT | 3 cut(s) | 217, 288, 347 |
| TfiI | GAWTC | 2 cut(s) | 29, 88 |
| TscAI | CASTG | 1 cut(s) | 212 |
| TseFI | GTSAC | 1 cut(s) | 179 |
| TseI | GCWGC | 2 cut(s) | 251, 254 |
| Tsp45I | GTSAC | 1 cut(s) | 179 |
| TspDTI | ATGAA | 2 cut(s) | 202, 230 |
| TspRI | CASTG | 1 cut(s) | 212 |
| Tth111I | GACNNNGTC | 1 cut(s) | 133 |
| XapI | RAATTY | 3 cut(s) | 217, 288, 347 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 16 |