Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0022870

Physical Location & Seq

Genomic Coordinates Reverse (-)

52996543 .. 53000127

Gene Structure 3585 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009449

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGGAGCGGAGAAAGCAGATGCGTCGTTGGATTCGTTGATCGCCGGGTTCAACAGTCAGATCTCAGAGCTCCAAGAGCTCGTTATTGCTCGAAATAGGATTTGGGTATTTGTTTCTGGTGGCTGCAGAATATTTGGTTCAGGGCGATGGGCTATGGGAGAATTCAGCTTTTACGAGAAAACTTGGAAGGGAATTTCCTTATCAGCAAAGCAATTAATATCAGACCTTCTCAATGTTGACCCTGAAAAGAGACCTAGTGCTCAAGAGCTTATGGACCATCCATGGGTTGAAGGTCTTTCAGCCAGAGAGGACCAAATGGATGCTGAGATTGTTTCACGACTGAAGAGTTTTAATGCTCGACGCAAACTCAGTGCTGCAGCAATAGCTAGTGTGTGGACAAGCTCCATTTTCTTGAGGACAAAAAAGCTCAAATCATTGCTAGGGTCCCATGACCTTAAACAGGAGGAAATCCAGAACCTGAGTTTGCATTTTAAGAAAATATGTGTAAAGGGTGATAATGCAACTCTGTCTGAATTTGTGGAGGTGCTGAAAGCAATGAAAATGTCATCACTGGTCCCTCTAGCACCCCGTATTTTCGACCTATTTGACAACAACAGAGATGGAACAGTAGACATGCGAGAGATACTCTGTGGTTTCTCTAGTCTCAAGAATTCACGAGGAGATGATGCTCTCCGCCTGTGCTTCCAGATGTATGATACAGATCGATCAGGAAGCATCAGTAAAGAAGAAGTGGCATCTATGCTCAGGGCTTTGCCAGATGACTGCCTTCCAGCTGATATTATAGAACCTGGGAAATTGGATGAAATTTTTGATCAAATGGATGCCAACAGCGACGGAAAAGTTACCTTTGATGAGTTCAAAGCTGCCATGCAGAGAGACAGCTCTCTCCAAGATGTAGTCCTCTCCTCTCTTCGGGCGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009877 GO:0009931 GO:0009987 GO:0010857 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 ko04921 ko04925 ko05145 map04626 map04921 map04925 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 Pkinase

Protein Analysis

315

Amino Acids

35.03

Weight (kDa)

5.24

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	56 - 96	9.5e-07	Protein kinase domain
EF-hand_7	PF13499	229 - 298	2e-15	EF-hand domain pair
EF-hand_6	PF13405	231 - 258	4.1e-06	EF-hand domain
EF-hand_1	PF00036	272 - 299	1e-07	EF hand domain
EF-hand_5	PF13202	273 - 295	6.4e-06	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0022870)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000009449 RLG00000013259 RLG00000019608 RLG00000033184

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	8
AccI	GTMKAC	1 cut(s)	630
AciI	CCGC	2 cut(s)	8, 694
AcsI	RAATTY	5 cut(s)	161, 192, 533, 670, 825
AcuI	CTGAAG	1 cut(s)	362
AfiI	CCNNNNNNNGG	3 cut(s)	283, 460, 933
AgsI	TTSAA	3 cut(s)	52, 290, 880
AjnI	CCWGG	1 cut(s)	808
AjuI	GAANNNNNNNTTGG	2 cut(s)	85, 117
Alw21I	GWGCWC	3 cut(s)	72, 81, 262
Alw26I	GTCTC	3 cut(s)	244, 668, 891
AlwNI	CAGNNNCTG	1 cut(s)	478
ApeKI	GCWGC	4 cut(s)	123, 374, 377, 884
ApoI	RAATTY	5 cut(s)	161, 192, 533, 670, 825
AseI	ATTAAT	1 cut(s)	215
AspLEI	GCGC	1 cut(s)	940
AspS9I	GGNCC	4 cut(s)	274, 310, 444, 574
AsuC2I	CCSGG	1 cut(s)	46
AsuHPI	GGTGA	1 cut(s)	524
AvaII	GGWCC	4 cut(s)	274, 310, 444, 574
BanII	GRGCYC	2 cut(s)	72, 81
BauI	CACGAG	1 cut(s)	675
Bbv12I	GWGCWC	3 cut(s)	72, 81, 262
BbvI	GCAGC	4 cut(s)	110, 361, 389, 871
BccI	CCATC	3 cut(s)	141, 285, 614
BcgI	CGANNNNNNTGC	2 cut(s)	6, 40
BciT130I	CCWGG	1 cut(s)	810
BclI	TGATCA	1 cut(s)	832
BcnI	CCSGG	1 cut(s)	46
BcoDI	GTCTC	3 cut(s)	244, 668, 891
BfaI	CTAG	5 cut(s)	255, 387, 440, 581, 660
BfmI	CTRYAG	3 cut(s)	124, 375, 941
BfoI	RGCGCY	1 cut(s)	941
BglII	AGATCT	1 cut(s)	60
BisI	GCNGC	4 cut(s)	124, 375, 378, 885
BlsI	GCNGC	4 cut(s)	125, 376, 379, 886
Bme1390I	CCNGG	2 cut(s)	46, 810
Bme18I	GGWCC	4 cut(s)	274, 310, 444, 574
BmgT120I	GGNCC	4 cut(s)	274, 310, 444, 574
BmiI	GGNNCC	3 cut(s)	445, 446, 576
BmrFI	CCNGG	2 cut(s)	46, 810
BmsI	GCATC	6 cut(s)	10, 310, 676, 744, 764, 832
BplI	GAGNNNNNCTC	2 cut(s)	630, 662
Bpu10I	CCTNAGC	1 cut(s)	764
BpuEI	CTTGAG	3 cut(s)	246, 433, 650
BpuMI	CCSGG	1 cut(s)	46
Bsa29I	ATCGAT	1 cut(s)	724
BsaBI	GATNNNNATC	1 cut(s)	720
BsaI	GGTCTC	1 cut(s)	244
BsaJI	CCNNGG	2 cut(s)	281, 809
Bsc4I	CCNNNNNNNGG	3 cut(s)	283, 460, 933
Bse1I	ACTGG	1 cut(s)	576
Bse3DI	GCAATG	2 cut(s)	434, 561
Bse8I	GATNNNNATC	1 cut(s)	720
BseBI	CCWGG	1 cut(s)	810
BseCI	ATCGAT	1 cut(s)	724
BseDI	CCNNGG	2 cut(s)	281, 809
BseGI	GGATG	4 cut(s)	277, 325, 826, 847
BseJI	GATNNNNATC	1 cut(s)	720
BseLI	CCNNNNNNNGG	3 cut(s)	283, 460, 933
BseMI	GCAATG	2 cut(s)	434, 561
BseMII	CTCAG	5 cut(s)	78, 315, 382, 470, 778
BseNI	ACTGG	1 cut(s)	576
BseRI	GAGGAG	2 cut(s)	693, 916
BseXI	GCAGC	4 cut(s)	110, 361, 389, 871
BshVI	ATCGAT	1 cut(s)	724
BsiHKAI	GWGCWC	3 cut(s)	72, 81, 262
BsiSI	CCGG	1 cut(s)	45
BslFI	GGGAC	2 cut(s)	430, 560
BslI	CCNNNNNNNGG	3 cut(s)	283, 460, 933
BsmAI	GTCTC	3 cut(s)	244, 668, 891
BsmFI	GGGAC	2 cut(s)	430, 560
Bso31I	GGTCTC	1 cut(s)	244
Bsp1286I	GDGCHC	3 cut(s)	72, 81, 262
Bsp143I	GATC	5 cut(s)	39, 60, 721, 725, 832
Bsp19I	CCATGG	1 cut(s)	281
BspACI	CCGC	2 cut(s)	8, 694
BspCNI	CTCAG	5 cut(s)	77, 316, 381, 471, 777
BspDI	ATCGAT	1 cut(s)	724
BspLI	GGNNCC	3 cut(s)	445, 446, 576
BspMAI	CTGCAG	2 cut(s)	128, 379
BspTNI	GGTCTC	1 cut(s)	244
BsrBI	CCGCTC	1 cut(s)	8
BsrDI	GCAATG	2 cut(s)	434, 561
BsrI	ACTGG	1 cut(s)	576
BssECI	CCNNGG	2 cut(s)	281, 809
BssMI	GATC	5 cut(s)	39, 60, 721, 725, 832
BssSI	CACGAG	1 cut(s)	675
BssT1I	CCWWGG	1 cut(s)	281
Bst2BI	CACGAG	1 cut(s)	675
Bst2UI	CCWGG	1 cut(s)	810
Bst4CI	ACNGT	2 cut(s)	56, 628
Bst6I	CTCTTC	2 cut(s)	338, 936
BstDEI	CTNAG	5 cut(s)	64, 324, 368, 479, 764
BstDSI	CCRYGG	1 cut(s)	281
BstENI	CCTNNNNNAGG	1 cut(s)	458
BstF5I	GGATG	4 cut(s)	277, 325, 826, 847
BstH2I	RGCGCY	1 cut(s)	941
BstHHI	GCGC	1 cut(s)	940
BstKTI	GATC	5 cut(s)	42, 63, 724, 728, 835
BstMAI	GTCTC	3 cut(s)	244, 668, 891
BstMBI	GATC	5 cut(s)	39, 60, 721, 725, 832
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 76, 383
BstNI	CCWGG	1 cut(s)	810
BstNSI	RCATGY	1 cut(s)	637
BstSCI	CCNGG	2 cut(s)	44, 808
BstSFI	CTRYAG	3 cut(s)	124, 375, 941
BstV1I	GCAGC	4 cut(s)	110, 361, 389, 871
BstX2I	RGATCY	1 cut(s)	60
BstYI	RGATCY	1 cut(s)	60
Bsu15I	ATCGAT	1 cut(s)	724
BsuTUI	ATCGAT	1 cut(s)	724
BtgI	CCRYGG	1 cut(s)	281
BtgZI	GCGATG	1 cut(s)	160
BtsCI	GGATG	4 cut(s)	277, 325, 826, 847
BtsIMutI	CAGTG	2 cut(s)	376, 569
CaiI	CAGNNNCTG	1 cut(s)	478
CfoI	GCGC	1 cut(s)	940
Cfr13I	GGNCC	4 cut(s)	274, 310, 444, 574
ClaI	ATCGAT	1 cut(s)	724
CseI	GACGC	2 cut(s)	12, 369
CviAII	CATG	4 cut(s)	282, 449, 634, 889
DdeI	CTNAG	5 cut(s)	64, 324, 368, 479, 764
DpnI	GATC	5 cut(s)	41, 62, 723, 727, 834
DpnII	GATC	5 cut(s)	39, 60, 721, 725, 832
Eam1104I	CTCTTC	2 cut(s)	338, 936
EarI	CTCTTC	2 cut(s)	338, 936
EciI	GGCGGA	1 cut(s)	683
Ecl136II	GAGCTC	2 cut(s)	70, 79
Eco130I	CCWWGG	1 cut(s)	281
Eco24I	GRGCYC	2 cut(s)	72, 81
Eco31I	GGTCTC	1 cut(s)	244
Eco47I	GGWCC	4 cut(s)	274, 310, 444, 574
Eco53kI	GAGCTC	2 cut(s)	70, 79
Eco57I	CTGAAG	1 cut(s)	362
EcoICRI	GAGCTC	2 cut(s)	70, 79
EcoNI	CCTNNNNNAGG	1 cut(s)	458
EcoO109I	RGGNCCY	1 cut(s)	444
EcoRI	GAATTC	2 cut(s)	161, 670
EcoRII	CCWGG	1 cut(s)	808
EcoT14I	CCWWGG	1 cut(s)	281
EcoT38I	GRGCYC	2 cut(s)	72, 81
ErhI	CCWWGG	1 cut(s)	281
FaeI	CATG	4 cut(s)	285, 452, 637, 892
FaqI	GGGAC	2 cut(s)	430, 560
FatI	CATG	4 cut(s)	281, 448, 633, 888
FbaI	TGATCA	1 cut(s)	832
FblI	GTMKAC	1 cut(s)	630
Fnu4HI	GCNGC	4 cut(s)	124, 375, 378, 885
FokI	GGATG	4 cut(s)	264, 332, 833, 854
FriOI	GRGCYC	2 cut(s)	72, 81
Fsp4HI	GCNGC	4 cut(s)	124, 375, 378, 885
FspBI	CTAG	5 cut(s)	255, 387, 440, 581, 660
GlaI	GCGC	1 cut(s)	939
GluI	GCNGC	4 cut(s)	124, 375, 378, 885
HaeII	RGCGCY	1 cut(s)	941
HapII	CCGG	1 cut(s)	45
HgaI	GACGC	2 cut(s)	12, 369
HhaI	GCGC	1 cut(s)	940
Hin1II	CATG	4 cut(s)	285, 452, 637, 892
Hin6I	GCGC	1 cut(s)	938
HinP1I	GCGC	1 cut(s)	938
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HinfI	GANTC	1 cut(s)	32
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	1 cut(s)	524
Hpy166II	GTNNAC	3 cut(s)	238, 396, 631
Hpy188I	TCNGA	4 cut(s)	60, 67, 223, 532
Hpy188III	TCNNGA	8 cut(s)	263, 336, 412, 472, 667, 675, 706, 729
Hpy8I	GTNNAC	3 cut(s)	238, 396, 631
Hpy99I	CGWCG	3 cut(s)	28, 363, 857
HpyAV	CCTTC	4 cut(s)	181, 236, 284, 797
HpyCH4III	ACNGT	2 cut(s)	56, 628
HpyCH4V	TGCA	5 cut(s)	126, 377, 487, 521, 892
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 76, 383
HpyF3I	CTNAG	5 cut(s)	64, 324, 368, 479, 764
Hsp92II	CATG	4 cut(s)	285, 452, 637, 892
HspAI	GCGC	1 cut(s)	938
KflI	GGGWCCC	1 cut(s)	444
Ksp22I	TGATCA	1 cut(s)	832
Kzo9I	GATC	5 cut(s)	39, 60, 721, 725, 832
LmnI	GCTCC	3 cut(s)	5, 75, 407
Lsp1109I	GCAGC	4 cut(s)	110, 361, 389, 871
LweI	GCATC	6 cut(s)	10, 310, 676, 744, 764, 832
MaeI	CTAG	5 cut(s)	255, 387, 440, 581, 660
MaeIII	GTNAC	1 cut(s)	862
MalI	GATC	5 cut(s)	41, 62, 723, 727, 834
MbiI	CCGCTC	1 cut(s)	8
MboI	GATC	5 cut(s)	39, 60, 721, 725, 832
MboII	GAAGA	3 cut(s)	355, 758, 923
MflI	RGATCY	1 cut(s)	60
MhlI	GDGCHC	3 cut(s)	72, 81, 262
MluCI	AATT	7 cut(s)	161, 192, 212, 533, 670, 815, 825
MmeI	TCCRAC	1 cut(s)	9
MnlI	CCTC	8 cut(s)	301, 408, 457, 535, 588, 671, 932, 937
MseI	TTAA	4 cut(s)	215, 351, 456, 492
MspA1I	CMGCKG	1 cut(s)	794
MspI	CCGG	1 cut(s)	45
MspR9I	CCNGG	2 cut(s)	46, 810
MvaI	CCWGG	1 cut(s)	810
MwoI	GCNNNNNNNGC	3 cut(s)	14, 76, 383
NciI	CCSGG	1 cut(s)	46
NcoI	CCATGG	1 cut(s)	281
NdeII	GATC	5 cut(s)	39, 60, 721, 725, 832
NlaIII	CATG	4 cut(s)	285, 452, 637, 892
NlaIV	GGNNCC	3 cut(s)	445, 446, 576
NspI	RCATGY	1 cut(s)	637
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	32
PkrI	GCNGC	4 cut(s)	125, 376, 379, 886
PpuMI	RGGWCCY	1 cut(s)	444
PshBI	ATTAAT	1 cut(s)	215
Psp124BI	GAGCTC	2 cut(s)	72, 81
Psp5II	RGGWCCY	1 cut(s)	444
Psp6I	CCWGG	1 cut(s)	808
PspGI	CCWGG	1 cut(s)	808
PspN4I	GGNNCC	3 cut(s)	445, 446, 576
PspPI	GGNCC	4 cut(s)	274, 310, 444, 574
PspPPI	RGGWCCY	1 cut(s)	444
PstI	CTGCAG	2 cut(s)	128, 379
PstNI	CAGNNNCTG	1 cut(s)	478
PsuI	RGATCY	1 cut(s)	60
PvuII	CAGCTG	1 cut(s)	794
SacI	GAGCTC	2 cut(s)	72, 81
SaqAI	TTAA	4 cut(s)	215, 351, 456, 492
SatI	GCNGC	4 cut(s)	124, 375, 378, 885
Sau3AI	GATC	5 cut(s)	39, 60, 721, 725, 832
Sau96I	GGNCC	4 cut(s)	274, 310, 444, 574
ScrFI	CCNGG	2 cut(s)	46, 810
SduI	GDGCHC	3 cut(s)	72, 81, 262
SfaNI	GCATC	6 cut(s)	10, 310, 676, 744, 764, 832
SfcI	CTRYAG	3 cut(s)	124, 375, 941
SinI	GGWCC	4 cut(s)	274, 310, 444, 574
SmlI	CTYRAG	3 cut(s)	261, 412, 665
SmoI	CTYRAG	3 cut(s)	261, 412, 665
Sse9I	AATT	7 cut(s)	161, 192, 212, 533, 670, 815, 825
SsiI	CCGC	2 cut(s)	8, 694
SspI	AATATT	1 cut(s)	132
SspMI	CTAG	5 cut(s)	255, 387, 440, 581, 660
SstI	GAGCTC	2 cut(s)	72, 81
StyD4I	CCNGG	2 cut(s)	44, 808
StyI	CCWWGG	1 cut(s)	281
TaaI	ACNGT	2 cut(s)	56, 628
TaqI	TCGA	4 cut(s)	91, 358, 597, 724
TasI	AATT	7 cut(s)	161, 192, 212, 533, 670, 815, 825
TfiI	GAWTC	1 cut(s)	32
Tru1I	TTAA	4 cut(s)	215, 351, 456, 492
Tru9I	TTAA	4 cut(s)	215, 351, 456, 492
TscAI	CASTG	2 cut(s)	376, 576
TseI	GCWGC	4 cut(s)	123, 374, 377, 884
TspDTI	ATGAA	2 cut(s)	572, 837
TspGWI	ACGGA	1 cut(s)	870
TspRI	CASTG	2 cut(s)	376, 576
VpaK11BI	GGWCC	4 cut(s)	274, 310, 444, 574
VspI	ATTAAT	1 cut(s)	215
XagI	CCTNNNNNAGG	1 cut(s)	458
XapI	RAATTY	5 cut(s)	161, 192, 533, 670, 825
XceI	RCATGY	1 cut(s)	637
XmiI	GTMKAC	1 cut(s)	630
XspI	CTAG	5 cut(s)	255, 387, 440, 581, 660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.