Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0022870

Physical Location & Seq

Genomic Coordinates Reverse (-)

28822413 .. 28830086

Gene Structure 7674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013259

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGGAGCGGAGAAAGCAGAGGCGTCGTTGGATTTGTTGATCGCCGGGTTCAACAGTCAGATCTCAGAGCTCCAAGAGCTCGTTATTGCTCGAAATAGACATCTTTTTGTAGAAGTACTTCTTTTTGCAGTCATTGTTTTTCTATTCTCCCAGAAAAGTTACAAGCCCCCTAAGAAGCCTTTAACAGAGAAGGGAGAATTCAGCTTTTACGAGAAAACTTGGAAGGGAATTTCCTTATCAGCAAAGCAATTAATATCAGACCTCCTCAAAGTTGACCCTGAAAAGAGACCTAGTGCTCAAGAGCTTATGGACCATCCATGGGTTGTAGGTCTTTCAGCCAGAGAGGACCAAATGGATGCTGAGATTGTTTCACGACTGCAGAGTTTTAATGCTCGACGCAAGCTCCGTGCTGCAGCAATAGCTAGTGTGTGGACAAGCTCCATTTTCTTGAGGACAAAGAAGCTCAAATCATTGCTAGGGTCCCATGACCTTAAACAGGAGGAAATCCAGAACCTGAGTTTGCATTTTAAGAAAATATGTGTAAAGGATGATAATGCAACTCTGTCTGAATTTGTGGAGGTGCTGAAAGCAATGAAAATGTCATCACTGGTCCCTCTAGCACCCCGTATTTTCGACCTATTTGACAACAACAGAGATGGAACAGTAGACATGCGAGAGATACTCTGTGGTTTCTCTAGTCTCAAGAATTCACGAGGAGATGATGCTCTCCGCCTGTGCTTCCAGATGTATGATACAGATCGATCAGGATGCATCAGTAAAGAAGAAGTGGCATCTATGCTCAGGGCTTTGCTAGATGACTGCCTTCCAGCTGATATTACAGAACCTGGGAAATTGGATGAAATTTTGATCGAATGGATGCCAACAGCGACGGAAAAGTTACCTTTGATGAGTTCAAAGCTGCCATGCAGAGAGACAGCTCTCTCCAAGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009877 GO:0009931 GO:0009987 GO:0010857 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 ko04921 ko04925 ko05145 map04626 map04921 map04925 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 Pkinase

Protein Analysis

318

Amino Acids

35.82

Weight (kDa)

6.92

Isoelectric Point (pI)

44.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	66 - 108	6.4e-07	Protein kinase domain
EF-hand_7	PF13499	209 - 267	1.2e-08	EF-hand domain pair
EF-hand_6	PF13405	243 - 270	3.1e-06	EF-hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022870)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000009449 RLG00000013259 RLG00000019608 RLG00000033184

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	8
AccI	GTMKAC	1 cut(s)	666
AciI	CCGC	2 cut(s)	8, 730
AcsI	RAATTY	5 cut(s)	197, 228, 569, 706, 861
AcyI	GRCGYC	1 cut(s)	23
AfaI	GTAC	1 cut(s)	117
AfiI	CCNNNNNNNGG	2 cut(s)	319, 496
AgsI	TTSAA	2 cut(s)	52, 915
AjnI	CCWGG	1 cut(s)	844
Alw21I	GWGCWC	3 cut(s)	72, 81, 298
Alw26I	GTCTC	3 cut(s)	280, 704, 926
AlwNI	CAGNNNCTG	2 cut(s)	514, 845
ApeKI	GCWGC	3 cut(s)	410, 413, 919
ApoI	RAATTY	5 cut(s)	197, 228, 569, 706, 861
AseI	ATTAAT	1 cut(s)	251
Asp700I	GAANNNNTTC	1 cut(s)	117
AspS9I	GGNCC	4 cut(s)	310, 346, 480, 610
AsuC2I	CCSGG	1 cut(s)	46
AvaII	GGWCC	4 cut(s)	310, 346, 480, 610
BanII	GRGCYC	2 cut(s)	72, 81
BarI	GAAGNNNNNNTAC	2 cut(s)	102, 134
BauI	CACGAG	1 cut(s)	711
Bbv12I	GWGCWC	3 cut(s)	72, 81, 298
BbvI	GCAGC	3 cut(s)	397, 425, 906
BccI	CCATC	2 cut(s)	321, 650
BcgI	CGANNNNNNTGC	4 cut(s)	6, 40, 750, 784
BciT130I	CCWGG	1 cut(s)	846
BcnI	CCSGG	1 cut(s)	46
BcoDI	GTCTC	3 cut(s)	280, 704, 926
BfaI	CTAG	6 cut(s)	291, 423, 476, 617, 696, 812
BfmI	CTRYAG	2 cut(s)	377, 411
BglII	AGATCT	1 cut(s)	60
BisI	GCNGC	3 cut(s)	411, 414, 920
BlsI	GCNGC	3 cut(s)	412, 415, 921
BmcAI	AGTACT	1 cut(s)	117
Bme1390I	CCNGG	2 cut(s)	46, 846
Bme18I	GGWCC	4 cut(s)	310, 346, 480, 610
BmgT120I	GGNCC	4 cut(s)	310, 346, 480, 610
BmiI	GGNNCC	3 cut(s)	481, 482, 612
BmrFI	CCNGG	2 cut(s)	46, 846
BmsI	GCATC	6 cut(s)	346, 712, 758, 780, 800, 867
BplI	GAGNNNNNCTC	2 cut(s)	666, 698
Bpu10I	CCTNAGC	1 cut(s)	800
BpuEI	CTTGAG	3 cut(s)	282, 469, 686
BpuMI	CCSGG	1 cut(s)	46
Bsa29I	ATCGAT	1 cut(s)	760
BsaBI	GATNNNNATC	1 cut(s)	756
BsaHI	GRCGYC	1 cut(s)	23
BsaI	GGTCTC	1 cut(s)	280
BsaJI	CCNNGG	2 cut(s)	317, 845
BsaXI	ACNNNNNCTCC	2 cut(s)	387, 417
Bsc4I	CCNNNNNNNGG	2 cut(s)	319, 496
Bse1I	ACTGG	1 cut(s)	612
Bse3DI	GCAATG	2 cut(s)	470, 597
Bse8I	GATNNNNATC	1 cut(s)	756
BseBI	CCWGG	1 cut(s)	846
BseCI	ATCGAT	1 cut(s)	760
BseDI	CCNNGG	2 cut(s)	317, 845
BseGI	GGATG	6 cut(s)	313, 361, 553, 773, 862, 882
BseJI	GATNNNNATC	1 cut(s)	756
BseLI	CCNNNNNNNGG	2 cut(s)	319, 496
BseMI	GCAATG	2 cut(s)	470, 597
BseMII	CTCAG	4 cut(s)	78, 351, 506, 814
BseNI	ACTGG	1 cut(s)	612
BseRI	GAGGAG	2 cut(s)	254, 729
BseXI	GCAGC	3 cut(s)	397, 425, 906
BshVI	ATCGAT	1 cut(s)	760
BsiHKAI	GWGCWC	3 cut(s)	72, 81, 298
BsiSI	CCGG	1 cut(s)	45
BslFI	GGGAC	2 cut(s)	466, 596
BslI	CCNNNNNNNGG	2 cut(s)	319, 496
BsmAI	GTCTC	3 cut(s)	280, 704, 926
BsmFI	GGGAC	2 cut(s)	466, 596
Bso31I	GGTCTC	1 cut(s)	280
Bsp1286I	GDGCHC	3 cut(s)	72, 81, 298
Bsp143I	GATC	5 cut(s)	39, 60, 757, 761, 867
Bsp19I	CCATGG	1 cut(s)	317
BspACI	CCGC	2 cut(s)	8, 730
BspCNI	CTCAG	4 cut(s)	77, 352, 507, 813
BspDI	ATCGAT	1 cut(s)	760
BspLI	GGNNCC	3 cut(s)	481, 482, 612
BspMAI	CTGCAG	2 cut(s)	381, 415
BspTNI	GGTCTC	1 cut(s)	280
BsrBI	CCGCTC	1 cut(s)	8
BsrDI	GCAATG	2 cut(s)	470, 597
BsrI	ACTGG	1 cut(s)	612
BssECI	CCNNGG	2 cut(s)	317, 845
BssMI	GATC	5 cut(s)	39, 60, 757, 761, 867
BssNI	GRCGYC	1 cut(s)	23
BssSI	CACGAG	1 cut(s)	711
BssT1I	CCWWGG	1 cut(s)	317
Bst2BI	CACGAG	1 cut(s)	711
Bst2UI	CCWGG	1 cut(s)	846
Bst4CI	ACNGT	2 cut(s)	56, 664
BstACI	GRCGYC	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	401
BstDEI	CTNAG	5 cut(s)	64, 171, 360, 515, 800
BstDSI	CCRYGG	1 cut(s)	317
BstENI	CCTNNNNNAGG	1 cut(s)	494
BstF5I	GGATG	6 cut(s)	313, 361, 553, 773, 862, 882
BstKTI	GATC	5 cut(s)	42, 63, 760, 764, 870
BstMAI	GTCTC	3 cut(s)	280, 704, 926
BstMBI	GATC	5 cut(s)	39, 60, 757, 761, 867
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 76, 419
BstNI	CCWGG	1 cut(s)	846
BstNSI	RCATGY	1 cut(s)	673
BstSCI	CCNGG	2 cut(s)	44, 844
BstSFI	CTRYAG	2 cut(s)	377, 411
BstV1I	GCAGC	3 cut(s)	397, 425, 906
BstX2I	RGATCY	1 cut(s)	60
BstYI	RGATCY	1 cut(s)	60
Bsu15I	ATCGAT	1 cut(s)	760
BsuTUI	ATCGAT	1 cut(s)	760
BtgI	CCRYGG	1 cut(s)	317
BtsCI	GGATG	6 cut(s)	313, 361, 553, 773, 862, 882
BtsIMutI	CAGTG	1 cut(s)	605
Cac8I	GCNNGC	1 cut(s)	401
CaiI	CAGNNNCTG	2 cut(s)	514, 845
Cfr13I	GGNCC	4 cut(s)	310, 346, 480, 610
ClaI	ATCGAT	1 cut(s)	760
CseI	GACGC	2 cut(s)	12, 405
Csp6I	GTAC	1 cut(s)	116
CviAII	CATG	4 cut(s)	318, 485, 670, 924
CviQI	GTAC	1 cut(s)	116
DdeI	CTNAG	5 cut(s)	64, 171, 360, 515, 800
DpnI	GATC	5 cut(s)	41, 62, 759, 763, 869
DpnII	GATC	5 cut(s)	39, 60, 757, 761, 867
EciI	GGCGGA	1 cut(s)	719
Ecl136II	GAGCTC	2 cut(s)	70, 79
Eco130I	CCWWGG	1 cut(s)	317
Eco24I	GRGCYC	2 cut(s)	72, 81
Eco31I	GGTCTC	1 cut(s)	280
Eco47I	GGWCC	4 cut(s)	310, 346, 480, 610
Eco53kI	GAGCTC	2 cut(s)	70, 79
EcoICRI	GAGCTC	2 cut(s)	70, 79
EcoNI	CCTNNNNNAGG	1 cut(s)	494
EcoO109I	RGGNCCY	1 cut(s)	480
EcoRI	GAATTC	2 cut(s)	197, 706
EcoRII	CCWGG	1 cut(s)	844
EcoT14I	CCWWGG	1 cut(s)	317
EcoT22I	ATGCAT	1 cut(s)	773
EcoT38I	GRGCYC	2 cut(s)	72, 81
ErhI	CCWWGG	1 cut(s)	317
FaeI	CATG	4 cut(s)	321, 488, 673, 927
FaiI	YATR	8 cut(s)	308, 319, 486, 538, 671, 750, 797, 925
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FaqI	GGGAC	2 cut(s)	466, 596
FatI	CATG	4 cut(s)	317, 484, 669, 923
FblI	GTMKAC	1 cut(s)	666
Fnu4HI	GCNGC	3 cut(s)	411, 414, 920
FokI	GGATG	6 cut(s)	300, 368, 560, 780, 869, 889
FriOI	GRGCYC	2 cut(s)	72, 81
Fsp4HI	GCNGC	3 cut(s)	411, 414, 920
FspBI	CTAG	6 cut(s)	291, 423, 476, 617, 696, 812
GluI	GCNGC	3 cut(s)	411, 414, 920
HapII	CCGG	1 cut(s)	45
HgaI	GACGC	2 cut(s)	12, 405
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	4 cut(s)	321, 488, 673, 927
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HpaII	CCGG	1 cut(s)	45
Hpy166II	GTNNAC	3 cut(s)	274, 432, 667
Hpy188I	TCNGA	4 cut(s)	60, 67, 259, 568
Hpy188III	TCNNGA	8 cut(s)	299, 372, 448, 508, 703, 711, 742, 765
Hpy8I	GTNNAC	3 cut(s)	274, 432, 667
Hpy99I	CGWCG	3 cut(s)	28, 399, 892
HpyAV	CCTTC	3 cut(s)	184, 217, 833
HpyCH4III	ACNGT	2 cut(s)	56, 664
HpyCH4V	TGCA	7 cut(s)	128, 379, 413, 523, 557, 771, 927
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 76, 419
HpyF3I	CTNAG	5 cut(s)	64, 171, 360, 515, 800
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	4 cut(s)	321, 488, 673, 927
KflI	GGGWCCC	1 cut(s)	480
Kzo9I	GATC	5 cut(s)	39, 60, 757, 761, 867
LmnI	GCTCC	4 cut(s)	5, 75, 408, 443
Lsp1109I	GCAGC	3 cut(s)	397, 425, 906
LweI	GCATC	6 cut(s)	346, 712, 758, 780, 800, 867
MaeI	CTAG	6 cut(s)	291, 423, 476, 617, 696, 812
MaeIII	GTNAC	2 cut(s)	158, 897
MalI	GATC	5 cut(s)	41, 62, 759, 763, 869
MbiI	CCGCTC	1 cut(s)	8
MboI	GATC	5 cut(s)	39, 60, 757, 761, 867
MboII	GAAGA	1 cut(s)	794
MflI	RGATCY	1 cut(s)	60
MhlI	GDGCHC	3 cut(s)	72, 81, 298
MluCI	AATT	7 cut(s)	197, 228, 248, 569, 706, 851, 861
MmeI	TCCRAC	1 cut(s)	9
Mph1103I	ATGCAT	1 cut(s)	773
MroXI	GAANNNNTTC	1 cut(s)	117
MseI	TTAA	5 cut(s)	182, 251, 387, 492, 528
MspA1I	CMGCKG	1 cut(s)	830
MspI	CCGG	1 cut(s)	45
MspR9I	CCNGG	2 cut(s)	46, 846
MvaI	CCWGG	1 cut(s)	846
MwoI	GCNNNNNNNGC	3 cut(s)	14, 76, 419
NciI	CCSGG	1 cut(s)	46
NcoI	CCATGG	1 cut(s)	317
NdeII	GATC	5 cut(s)	39, 60, 757, 761, 867
NlaIII	CATG	4 cut(s)	321, 488, 673, 927
NlaIV	GGNNCC	3 cut(s)	481, 482, 612
NsiI	ATGCAT	1 cut(s)	773
NspI	RCATGY	1 cut(s)	673
PcsI	WCGNNNNNNNCGW	1 cut(s)	403
PdmI	GAANNNNTTC	1 cut(s)	117
PkrI	GCNGC	3 cut(s)	412, 415, 921
PpuMI	RGGWCCY	1 cut(s)	480
PshBI	ATTAAT	1 cut(s)	251
Psp124BI	GAGCTC	2 cut(s)	72, 81
Psp5II	RGGWCCY	1 cut(s)	480
Psp6I	CCWGG	1 cut(s)	844
PspGI	CCWGG	1 cut(s)	844
PspN4I	GGNNCC	3 cut(s)	481, 482, 612
PspPI	GGNCC	4 cut(s)	310, 346, 480, 610
PspPPI	RGGWCCY	1 cut(s)	480
PstI	CTGCAG	2 cut(s)	381, 415
PstNI	CAGNNNCTG	2 cut(s)	514, 845
PsuI	RGATCY	1 cut(s)	60
PvuII	CAGCTG	1 cut(s)	830
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
SacI	GAGCTC	2 cut(s)	72, 81
SaqAI	TTAA	5 cut(s)	182, 251, 387, 492, 528
SatI	GCNGC	3 cut(s)	411, 414, 920
Sau3AI	GATC	5 cut(s)	39, 60, 757, 761, 867
Sau96I	GGNCC	4 cut(s)	310, 346, 480, 610
ScaI	AGTACT	1 cut(s)	117
ScrFI	CCNGG	2 cut(s)	46, 846
SduI	GDGCHC	3 cut(s)	72, 81, 298
SfaNI	GCATC	6 cut(s)	346, 712, 758, 780, 800, 867
SfcI	CTRYAG	2 cut(s)	377, 411
SinI	GGWCC	4 cut(s)	310, 346, 480, 610
SmlI	CTYRAG	3 cut(s)	297, 448, 701
SmoI	CTYRAG	3 cut(s)	297, 448, 701
Sse9I	AATT	7 cut(s)	197, 228, 248, 569, 706, 851, 861
SsiI	CCGC	2 cut(s)	8, 730
SspMI	CTAG	6 cut(s)	291, 423, 476, 617, 696, 812
SstI	GAGCTC	2 cut(s)	72, 81
StyD4I	CCNGG	2 cut(s)	44, 844
StyI	CCWWGG	1 cut(s)	317
TaaI	ACNGT	2 cut(s)	56, 664
TaqI	TCGA	5 cut(s)	91, 394, 633, 760, 870
TasI	AATT	7 cut(s)	197, 228, 248, 569, 706, 851, 861
TatI	WGTACW	1 cut(s)	115
Tru1I	TTAA	5 cut(s)	182, 251, 387, 492, 528
Tru9I	TTAA	5 cut(s)	182, 251, 387, 492, 528
TscAI	CASTG	1 cut(s)	612
TseI	GCWGC	3 cut(s)	410, 413, 919
TspDTI	ATGAA	2 cut(s)	608, 873
TspGWI	ACGGA	2 cut(s)	395, 905
TspRI	CASTG	1 cut(s)	612
VpaK11BI	GGWCC	4 cut(s)	310, 346, 480, 610
VspI	ATTAAT	1 cut(s)	251
XagI	CCTNNNNNAGG	1 cut(s)	494
XapI	RAATTY	5 cut(s)	197, 228, 569, 706, 861
XceI	RCATGY	1 cut(s)	673
XmiI	GTMKAC	1 cut(s)	666
XmnI	GAANNNNTTC	1 cut(s)	117
XspI	CTAG	6 cut(s)	291, 423, 476, 617, 696, 812
ZrmI	AGTACT	1 cut(s)	117
Zsp2I	ATGCAT	1 cut(s)	773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.