Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0022870

Physical Location & Seq

Genomic Coordinates Reverse (-)

54202266 .. 54205863

Gene Structure 3598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019608

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGGTGCAGAGAAAGCAGAGGCGTCATTGGATTCGTTGATCGCCGGGTTCAACAGTCAGATCTTCGAGCTCCAAGAGCTCGTTATTGCTCGAAATACTTTTCAGAATGAGTCTACGGATTATATATGGTGGCAGGTAAGTGTAGACTTTGTTTATAGCATGATTTTGATGTTTTGGCAGGGATTTGGGTATTTGTTTCTGGTGGCTGCAGAATATTTGGTTCAGGGCGATGGGCTACGGTACCCACCTTTTATTGCTCAGTCGAATCGGCAGAAGCAGCAGATGATAATGGCTGGAGAATTCAGCTTTTACGAGAAAACTTGGAAGGGAATTTCCTTATCAGCAAAGCAATTAATATCAGACCTCCTCAAAGTTGACCCTGAAAAGAGACCTAGTGGTCAAGAGCTTATGGACCATCCATGGGTTGTAGGTCTTTCAGCCAGAGAGGACCAAATGGATGCTGAGATTGTTTCACGACTGCAGAGTTTTAATGCTCGACGCAAACTCCGTGCTACAGCAATAGCTAGTGTGTGGACAAGCTCCATTTTCTTGAGGACAAAGAAGCTCAAATCATTGCTAGGGTCCCATGACCTTAAACAGGAGGAAATCCAGAACCTGACAATGAAAATGTCATCACTGGTCCCTCTAGCACCCCGTATTTTCGACCTATTTGACAACAACAGAGATGGAACAGTAGACATGCGAGAGATACTTTGTGGTTTCTCTAGTCTCAAGAATTCACGAGGAGATGATGCTCTCCGCCTGTGCTTCCAGCAAATGTATGATACAGATCGATCAGGATGCATCAGTAAAGAAGAAGTGGCATCTATGCTCAGGGCTTTGCCAGATGACTGCCTTCCAGCTGATATTACAGAACCTGGGAAATTGGATGAAATTTTTGATCGAATGGATGCCAACAGCGACAGAAAAGTTACCTTTGATGAGTTCAAAGCTGCCATGCAGAGAGATAGCTTTCTCCAAGATGTAGTCCTCTCCTCTCTTCGGCCGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009877 GO:0009931 GO:0009987 GO:0010857 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 ko04921 ko04925 ko05145 map04626 map04921 map04925 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 Pkinase

Protein Analysis

338

Amino Acids

38.45

Weight (kDa)

5.0

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	82 - 142	2.9e-07	Protein kinase domain
EF-hand_7	PF13499	253 - 321	4.4e-12	EF-hand domain pair
EF-hand_1	PF00036	295 - 322	5.2e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022870)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000009449 RLG00000013259 RLG00000019608 RLG00000033184

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	396
Acc36I	ACCTGC	1 cut(s)	124
Acc65I	GGTACC	1 cut(s)	240
AccB1I	GGYRCC	1 cut(s)	240
AccI	GTMKAC	3 cut(s)	113, 144, 696
AciI	CCGC	2 cut(s)	760, 1007
AcoI	YGGCCR	1 cut(s)	1004
AcsI	RAATTY	4 cut(s)	299, 330, 736, 894
AcyI	GRCGYC	1 cut(s)	23
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	3 cut(s)	421, 598, 1002
AgsI	TTSAA	2 cut(s)	52, 949
AjnI	CCWGG	1 cut(s)	877
Alw21I	GWGCWC	2 cut(s)	72, 81
Alw26I	GTCTC	2 cut(s)	382, 734
AlwNI	CAGNNNCTG	2 cut(s)	616, 878
AoxI	GGCC	1 cut(s)	1004
ApeKI	GCWGC	3 cut(s)	206, 277, 953
ApoI	RAATTY	4 cut(s)	299, 330, 736, 894
AseI	ATTAAT	1 cut(s)	353
Asp718I	GGTACC	1 cut(s)	240
AspS9I	GGNCC	4 cut(s)	412, 448, 582, 640
AsuC2I	CCSGG	1 cut(s)	46
AvaII	GGWCC	4 cut(s)	412, 448, 582, 640
BanI	GGYRCC	1 cut(s)	240
BanII	GRGCYC	2 cut(s)	72, 81
BauI	CACGAG	1 cut(s)	741
Bbv12I	GWGCWC	2 cut(s)	72, 81
BbvI	GCAGC	3 cut(s)	193, 289, 940
BccI	CCATC	3 cut(s)	224, 423, 680
BcgI	CGANNNNNNTGC	2 cut(s)	783, 817
BciT130I	CCWGG	1 cut(s)	879
BcnI	CCSGG	1 cut(s)	46
BcoDI	GTCTC	2 cut(s)	382, 734
BfaI	CTAG	5 cut(s)	393, 525, 578, 647, 726
BfmI	CTRYAG	4 cut(s)	207, 479, 513, 1010
BfuAI	ACCTGC	1 cut(s)	124
BglII	AGATCT	1 cut(s)	60
BisI	GCNGC	4 cut(s)	207, 278, 954, 1007
BlsI	GCNGC	4 cut(s)	208, 279, 955, 1008
Bme1390I	CCNGG	2 cut(s)	46, 879
Bme18I	GGWCC	4 cut(s)	412, 448, 582, 640
BmgT120I	GGNCC	4 cut(s)	412, 448, 582, 640
BmiI	GGNNCC	4 cut(s)	242, 583, 584, 642
BmrFI	CCNGG	2 cut(s)	46, 879
BmsI	GCATC	6 cut(s)	448, 742, 791, 813, 833, 901
BpmI	CTGGAG	1 cut(s)	315
Bpu10I	CCTNAGC	1 cut(s)	833
BpuEI	CTTGAG	2 cut(s)	571, 716
BpuMI	CCSGG	1 cut(s)	46
Bsa29I	ATCGAT	1 cut(s)	793
BsaBI	GATNNNNATC	1 cut(s)	789
BsaHI	GRCGYC	1 cut(s)	23
BsaI	GGTCTC	1 cut(s)	382
BsaJI	CCNNGG	2 cut(s)	419, 878
BsaXI	ACNNNNNCTCC	2 cut(s)	489, 519
Bsc4I	CCNNNNNNNGG	3 cut(s)	421, 598, 1002
Bse1I	ACTGG	1 cut(s)	642
Bse3DI	GCAATG	1 cut(s)	572
Bse8I	GATNNNNATC	1 cut(s)	789
BseBI	CCWGG	1 cut(s)	879
BseCI	ATCGAT	1 cut(s)	793
BseDI	CCNNGG	2 cut(s)	419, 878
BseGI	GGATG	5 cut(s)	415, 463, 806, 895, 916
BseJI	GATNNNNATC	1 cut(s)	789
BseLI	CCNNNNNNNGG	3 cut(s)	421, 598, 1002
BseMI	GCAATG	1 cut(s)	572
BseMII	CTCAG	3 cut(s)	272, 453, 847
BseNI	ACTGG	1 cut(s)	642
BseRI	GAGGAG	3 cut(s)	356, 759, 985
BseX3I	CGGCCG	1 cut(s)	1004
BseXI	GCAGC	3 cut(s)	193, 289, 940
BsgI	GTGCAG	1 cut(s)	27
Bsh1285I	CGRYCG	1 cut(s)	1007
BshFI	GGCC	1 cut(s)	1006
BshNI	GGYRCC	1 cut(s)	240
BshVI	ATCGAT	1 cut(s)	793
BsiEI	CGRYCG	1 cut(s)	1007
BsiHKAI	GWGCWC	2 cut(s)	72, 81
BsiSI	CCGG	1 cut(s)	45
BslFI	GGGAC	2 cut(s)	568, 626
BslI	CCNNNNNNNGG	3 cut(s)	421, 598, 1002
BsmAI	GTCTC	2 cut(s)	382, 734
BsmFI	GGGAC	2 cut(s)	568, 626
BsnI	GGCC	1 cut(s)	1006
Bso31I	GGTCTC	1 cut(s)	382
Bsp1286I	GDGCHC	2 cut(s)	72, 81
Bsp143I	GATC	5 cut(s)	39, 60, 790, 794, 901
Bsp19I	CCATGG	1 cut(s)	419
BspACI	CCGC	2 cut(s)	760, 1007
BspANI	GGCC	1 cut(s)	1006
BspCNI	CTCAG	3 cut(s)	271, 454, 846
BspDI	ATCGAT	1 cut(s)	793
BspLI	GGNNCC	4 cut(s)	242, 583, 584, 642
BspMAI	CTGCAG	2 cut(s)	211, 483
BspMI	ACCTGC	1 cut(s)	124
BspT107I	GGYRCC	1 cut(s)	240
BspTNI	GGTCTC	1 cut(s)	382
BsrDI	GCAATG	1 cut(s)	572
BsrI	ACTGG	1 cut(s)	642
BssECI	CCNNGG	2 cut(s)	419, 878
BssMI	GATC	5 cut(s)	39, 60, 790, 794, 901
BssNI	GRCGYC	1 cut(s)	23
BssSI	CACGAG	1 cut(s)	741
BssT1I	CCWWGG	1 cut(s)	419
Bst2BI	CACGAG	1 cut(s)	741
Bst2UI	CCWGG	1 cut(s)	879
Bst4CI	ACNGT	3 cut(s)	56, 240, 694
Bst6I	CTCTTC	1 cut(s)	1005
BstACI	GRCGYC	1 cut(s)	23
BstDEI	CTNAG	3 cut(s)	258, 462, 833
BstDSI	CCRYGG	1 cut(s)	419
BstENI	CCTNNNNNAGG	1 cut(s)	596
BstF5I	GGATG	5 cut(s)	415, 463, 806, 895, 916
BstKTI	GATC	5 cut(s)	42, 63, 793, 797, 904
BstMAI	GTCTC	2 cut(s)	382, 734
BstMBI	GATC	5 cut(s)	39, 60, 790, 794, 901
BstMCI	CGRYCG	1 cut(s)	1007
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 76, 277
BstNI	CCWGG	1 cut(s)	879
BstNSI	RCATGY	1 cut(s)	703
BstSCI	CCNGG	2 cut(s)	44, 877
BstSFI	CTRYAG	4 cut(s)	207, 479, 513, 1010
BstV1I	GCAGC	3 cut(s)	193, 289, 940
BstX2I	RGATCY	1 cut(s)	60
BstYI	RGATCY	1 cut(s)	60
BstZI	CGGCCG	1 cut(s)	1004
Bsu15I	ATCGAT	1 cut(s)	793
BsuRI	GGCC	1 cut(s)	1006
BsuTUI	ATCGAT	1 cut(s)	793
BtgI	CCRYGG	1 cut(s)	419
BtgZI	GCGATG	1 cut(s)	243
BtsCI	GGATG	5 cut(s)	415, 463, 806, 895, 916
BtsIMutI	CAGTG	1 cut(s)	635
BveI	ACCTGC	1 cut(s)	124
CaiI	CAGNNNCTG	2 cut(s)	616, 878
Cfr13I	GGNCC	4 cut(s)	412, 448, 582, 640
ClaI	ATCGAT	1 cut(s)	793
CseI	GACGC	2 cut(s)	12, 507
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	5 cut(s)	160, 420, 587, 700, 958
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	3 cut(s)	258, 462, 833
DpnI	GATC	5 cut(s)	41, 62, 792, 796, 903
DpnII	GATC	5 cut(s)	39, 60, 790, 794, 901
DrdI	GACNNNNNNGTC	1 cut(s)	396
DseDI	GACNNNNNNGTC	1 cut(s)	396
EaeI	YGGCCR	1 cut(s)	1004
EagI	CGGCCG	1 cut(s)	1004
Eam1104I	CTCTTC	1 cut(s)	1005
EarI	CTCTTC	1 cut(s)	1005
EciI	GGCGGA	1 cut(s)	749
Ecl136II	GAGCTC	2 cut(s)	70, 79
EclXI	CGGCCG	1 cut(s)	1004
Eco130I	CCWWGG	1 cut(s)	419
Eco24I	GRGCYC	2 cut(s)	72, 81
Eco31I	GGTCTC	1 cut(s)	382
Eco47I	GGWCC	4 cut(s)	412, 448, 582, 640
Eco52I	CGGCCG	1 cut(s)	1004
Eco53kI	GAGCTC	2 cut(s)	70, 79
EcoICRI	GAGCTC	2 cut(s)	70, 79
EcoNI	CCTNNNNNAGG	1 cut(s)	596
EcoO109I	RGGNCCY	1 cut(s)	582
EcoRI	GAATTC	2 cut(s)	299, 736
EcoRII	CCWGG	1 cut(s)	877
EcoT14I	CCWWGG	1 cut(s)	419
EcoT22I	ATGCAT	1 cut(s)	806
EcoT38I	GRGCYC	2 cut(s)	72, 81
ErhI	CCWWGG	1 cut(s)	419
FaeI	CATG	5 cut(s)	163, 423, 590, 703, 961
FaqI	GGGAC	2 cut(s)	568, 626
FatI	CATG	5 cut(s)	159, 419, 586, 699, 957
FblI	GTMKAC	3 cut(s)	113, 144, 696
Fnu4HI	GCNGC	4 cut(s)	207, 278, 954, 1007
FokI	GGATG	5 cut(s)	402, 470, 813, 902, 923
FriOI	GRGCYC	2 cut(s)	72, 81
Fsp4HI	GCNGC	4 cut(s)	207, 278, 954, 1007
FspBI	CTAG	5 cut(s)	393, 525, 578, 647, 726
GluI	GCNGC	4 cut(s)	207, 278, 954, 1007
GsuI	CTGGAG	1 cut(s)	315
HaeIII	GGCC	1 cut(s)	1006
HapII	CCGG	1 cut(s)	45
HgaI	GACGC	2 cut(s)	12, 507
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	5 cut(s)	163, 423, 590, 703, 961
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HinfI	GANTC	3 cut(s)	32, 110, 265
HpaII	CCGG	1 cut(s)	45
Hpy166II	GTNNAC	5 cut(s)	114, 145, 376, 534, 697
Hpy188I	TCNGA	3 cut(s)	60, 105, 361
Hpy188III	TCNNGA	7 cut(s)	401, 474, 550, 610, 733, 741, 798
Hpy8I	GTNNAC	5 cut(s)	114, 145, 376, 534, 697
Hpy99I	CGWCG	1 cut(s)	501
HpyAV	CCTTC	2 cut(s)	319, 866
HpyCH4III	ACNGT	3 cut(s)	56, 240, 694
HpyCH4V	TGCA	5 cut(s)	8, 209, 481, 804, 961
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 76, 277
HpyF3I	CTNAG	3 cut(s)	258, 462, 833
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	5 cut(s)	163, 423, 590, 703, 961
KflI	GGGWCCC	1 cut(s)	582
KpnI	GGTACC	1 cut(s)	244
Kzo9I	GATC	5 cut(s)	39, 60, 790, 794, 901
LmnI	GCTCC	2 cut(s)	75, 545
Lsp1109I	GCAGC	3 cut(s)	193, 289, 940
LweI	GCATC	6 cut(s)	448, 742, 791, 813, 833, 901
MaeI	CTAG	5 cut(s)	393, 525, 578, 647, 726
MaeIII	GTNAC	1 cut(s)	931
MalI	GATC	5 cut(s)	41, 62, 792, 796, 903
MboI	GATC	5 cut(s)	39, 60, 790, 794, 901
MboII	GAAGA	3 cut(s)	55, 827, 992
MflI	RGATCY	1 cut(s)	60
MhlI	GDGCHC	2 cut(s)	72, 81
MluCI	AATT	6 cut(s)	299, 330, 350, 736, 884, 894
MlyI	GAGTC	1 cut(s)	119
Mph1103I	ATGCAT	1 cut(s)	806
MseI	TTAA	3 cut(s)	353, 489, 594
MspA1I	CMGCKG	1 cut(s)	863
MspI	CCGG	1 cut(s)	45
MspR9I	CCNGG	2 cut(s)	46, 879
MvaI	CCWGG	1 cut(s)	879
MwoI	GCNNNNNNNGC	3 cut(s)	14, 76, 277
NciI	CCSGG	1 cut(s)	46
NcoI	CCATGG	1 cut(s)	419
NdeII	GATC	5 cut(s)	39, 60, 790, 794, 901
NlaIII	CATG	5 cut(s)	163, 423, 590, 703, 961
NlaIV	GGNNCC	4 cut(s)	242, 583, 584, 642
NsiI	ATGCAT	1 cut(s)	806
NspI	RCATGY	1 cut(s)	703
PcsI	WCGNNNNNNNCGW	1 cut(s)	505
PfeI	GAWTC	2 cut(s)	32, 265
PkrI	GCNGC	4 cut(s)	208, 279, 955, 1008
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
PpuMI	RGGWCCY	1 cut(s)	582
PshBI	ATTAAT	1 cut(s)	353
Psp124BI	GAGCTC	2 cut(s)	72, 81
Psp5II	RGGWCCY	1 cut(s)	582
Psp6I	CCWGG	1 cut(s)	877
PspGI	CCWGG	1 cut(s)	877
PspN4I	GGNNCC	4 cut(s)	242, 583, 584, 642
PspPI	GGNCC	4 cut(s)	412, 448, 582, 640
PspPPI	RGGWCCY	1 cut(s)	582
PstI	CTGCAG	2 cut(s)	211, 483
PstNI	CAGNNNCTG	2 cut(s)	616, 878
PsuI	RGATCY	1 cut(s)	60
PvuII	CAGCTG	1 cut(s)	863
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
SacI	GAGCTC	2 cut(s)	72, 81
SaqAI	TTAA	3 cut(s)	353, 489, 594
SatI	GCNGC	4 cut(s)	207, 278, 954, 1007
Sau3AI	GATC	5 cut(s)	39, 60, 790, 794, 901
Sau96I	GGNCC	4 cut(s)	412, 448, 582, 640
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	2 cut(s)	46, 879
SduI	GDGCHC	2 cut(s)	72, 81
SfaNI	GCATC	6 cut(s)	448, 742, 791, 813, 833, 901
SfcI	CTRYAG	4 cut(s)	207, 479, 513, 1010
SinI	GGWCC	4 cut(s)	412, 448, 582, 640
SmlI	CTYRAG	2 cut(s)	550, 731
SmoI	CTYRAG	2 cut(s)	550, 731
Sse9I	AATT	6 cut(s)	299, 330, 350, 736, 884, 894
SsiI	CCGC	2 cut(s)	760, 1007
SspI	AATATT	1 cut(s)	215
SspMI	CTAG	5 cut(s)	393, 525, 578, 647, 726
SstI	GAGCTC	2 cut(s)	72, 81
StyD4I	CCNGG	2 cut(s)	44, 877
StyI	CCWWGG	1 cut(s)	419
TaaI	ACNGT	3 cut(s)	56, 240, 694
TaqI	TCGA	7 cut(s)	66, 91, 263, 496, 663, 793, 904
TasI	AATT	6 cut(s)	299, 330, 350, 736, 884, 894
TauI	GCSGC	1 cut(s)	1009
TfiI	GAWTC	2 cut(s)	32, 265
Tru1I	TTAA	3 cut(s)	353, 489, 594
Tru9I	TTAA	3 cut(s)	353, 489, 594
TscAI	CASTG	1 cut(s)	642
TseI	GCWGC	3 cut(s)	206, 277, 953
TspDTI	ATGAA	2 cut(s)	638, 906
TspGWI	ACGGA	2 cut(s)	131, 497
TspRI	CASTG	1 cut(s)	642
VpaK11BI	GGWCC	4 cut(s)	412, 448, 582, 640
VspI	ATTAAT	1 cut(s)	353
XagI	CCTNNNNNAGG	1 cut(s)	596
XapI	RAATTY	4 cut(s)	299, 330, 736, 894
XceI	RCATGY	1 cut(s)	703
XmiI	GTMKAC	3 cut(s)	113, 144, 696
XspI	CTAG	5 cut(s)	393, 525, 578, 647, 726
Zsp2I	ATGCAT	1 cut(s)	806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.