Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0022870

Physical Location & Seq

Genomic Coordinates Reverse (-)

24155318 .. 24158906

Gene Structure 3589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033184

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGGAGCGGAGAAAGCAGAGGCGTCGTTGGATTCGTTGATCGTAGGGTTCAACAGTCAGATCTCAGAGCTCCAAGAGCTCGTTATTGCTCGAAATAGGATTTGGGTATTTGTTTCTGGTGGCTGCAGAATATTTGGTTTAGTGCGATGGGCTACGAACATCTTTTTGCAGAAGTACGTACTTCTTTTTGCAGTCATTTTTTTTCTATTCTCCCAGAAAAGTTACAAGCCCCCTAAGAAGCCTTTAACAGAGAAGGTACCCACCTTTTATTGCTCAGTCGAATCGGCAGAAGCAGCAGATGATAATGGCCAGACCTACTGCTCAAGAGCTTATGGACCATCCAGGGTTGTAGGTCTTTCAGCCAGAGAGGACCAAATGGATGCTGAGATTGTTTCACGACTGCAGAGTTTTAATGCTCGACGCAAACTCCGTGCTGCAGCAATAGCTAGTGTGTGGACAAGCTCCATTTTCTTGAGGACAAAGAAGCTCAAATCATTGCTAGGGTCCCATGACCTTAAACAGGAGGAAATCCAGAACCTGAGTTTGCATTTTAAGAAAATATGTGTAAAGGGTGATAATGCAACTCTGTCTGAATTTGTGGGGGTGCTGAAAGCAATGAAAATGTCATCACTGGTCCCTCTAGCACCCCGTATTTTCTACCTATTTGACAACAACAGAGATGGAACAGTAGACATGCGAGAGATACTCTGTGGTTTCTCTAGTCTCAAGAATTCACGAGGAGATGATGCTCTCCGCATGTGCTTCCAGATGTATGATACAGATCGATCAGGATGCATCAGTAAAGAAGAAGTGGCATCTATGCTCAAGGCTTTGCCAGATGACTGCCTTCCAGCTGATATTACAGAACCTGGGAAATTGGATGAAAGTTTTGATCGAAAGGATGCCAACAGCGACGGAAAAGTTACTTTTGATGAGTTCAAAGCTGCCATGCAGAGAGACAGCTCTCTCCAAGATGTAGTCCTCTCCTCTCTTCGGCCGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009877 GO:0009931 GO:0009987 GO:0010857 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 ko04921 ko04925 ko05145 map04626 map04921 map04925 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 Pkinase

Protein Analysis

335

Amino Acids

37.36

Weight (kDa)

8.33

Isoelectric Point (pI)

43.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	249 - 318	5.7e-13	EF-hand domain pair
EF-hand_1	PF00036	251 - 278	6.4e-06	EF hand domain
EF-hand_6	PF13405	251 - 278	1.9e-06	EF-hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022870)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000009449 RLG00000013259 RLG00000019608 RLG00000033184

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	256
AccB1I	GGYRCC	1 cut(s)	256
AccBSI	CCGCTC	1 cut(s)	8
AccI	GTMKAC	1 cut(s)	690
AciI	CCGC	3 cut(s)	8, 754, 998
AcoI	YGGCCR	2 cut(s)	307, 995
AcsI	RAATTY	2 cut(s)	593, 730
AcyI	GRCGYC	1 cut(s)	23
AfaI	GTAC	3 cut(s)	176, 180, 258
AfiI	CCNNNNNNNGG	2 cut(s)	520, 993
AgsI	TTSAA	2 cut(s)	52, 940
AjnI	CCWGG	2 cut(s)	341, 868
AjuI	GAANNNNNNNTTGG	2 cut(s)	85, 117
AluBI	AGCT	9 cut(s)	70, 79, 329, 446, 462, 487, 854, 944, 963
AluI	AGCT	9 cut(s)	70, 79, 329, 446, 462, 487, 854, 944, 963
Alw21I	GWGCWC	2 cut(s)	72, 81
Alw26I	GTCTC	2 cut(s)	728, 951
AlwNI	CAGNNNCTG	2 cut(s)	538, 869
AoxI	GGCC	2 cut(s)	307, 995
ApeKI	GCWGC	5 cut(s)	123, 293, 434, 437, 944
ApoI	RAATTY	2 cut(s)	593, 730
Asp718I	GGTACC	1 cut(s)	256
AspS9I	GGNCC	4 cut(s)	335, 370, 504, 634
AsuHPI	GGTGA	1 cut(s)	584
AvaII	GGWCC	4 cut(s)	335, 370, 504, 634
BalI	TGGCCA	1 cut(s)	309
BanI	GGYRCC	1 cut(s)	256
BanII	GRGCYC	2 cut(s)	72, 81
BauI	CACGAG	1 cut(s)	735
Bbv12I	GWGCWC	2 cut(s)	72, 81
BbvI	GCAGC	5 cut(s)	110, 305, 421, 449, 931
BccI	CCATC	3 cut(s)	141, 346, 674
BcgI	CGANNNNNNTGC	4 cut(s)	6, 40, 774, 808
BciT130I	CCWGG	2 cut(s)	343, 870
BcoDI	GTCTC	2 cut(s)	728, 951
BfaI	CTAG	4 cut(s)	447, 500, 641, 720
BfmI	CTRYAG	4 cut(s)	124, 401, 435, 1001
BglII	AGATCT	1 cut(s)	60
BisI	GCNGC	6 cut(s)	124, 294, 435, 438, 945, 998
BlsI	GCNGC	6 cut(s)	125, 295, 436, 439, 946, 999
Bme1390I	CCNGG	2 cut(s)	343, 870
Bme18I	GGWCC	4 cut(s)	335, 370, 504, 634
BmgT120I	GGNCC	4 cut(s)	335, 370, 504, 634
BmiI	GGNNCC	4 cut(s)	258, 505, 506, 636
BmrFI	CCNGG	2 cut(s)	343, 870
BmsI	GCATC	6 cut(s)	370, 736, 782, 804, 824, 892
BplI	GAGNNNNNCTC	2 cut(s)	690, 722
BpuEI	CTTGAG	4 cut(s)	307, 493, 710, 809
Bsa29I	ATCGAT	1 cut(s)	784
BsaAI	YACGTR	1 cut(s)	178
BsaBI	GATNNNNATC	1 cut(s)	780
BsaHI	GRCGYC	1 cut(s)	23
BsaJI	CCNNGG	2 cut(s)	342, 869
BsaXI	ACNNNNNCTCC	2 cut(s)	411, 441
Bsc4I	CCNNNNNNNGG	2 cut(s)	520, 993
Bse1I	ACTGG	1 cut(s)	636
Bse3DI	GCAATG	2 cut(s)	494, 621
Bse8I	GATNNNNATC	1 cut(s)	780
BseBI	CCWGG	2 cut(s)	343, 870
BseCI	ATCGAT	1 cut(s)	784
BseDI	CCNNGG	2 cut(s)	342, 869
BseGI	GGATG	5 cut(s)	338, 385, 797, 886, 907
BseJI	GATNNNNATC	1 cut(s)	780
BseLI	CCNNNNNNNGG	2 cut(s)	520, 993
BseMI	GCAATG	2 cut(s)	494, 621
BseMII	CTCAG	4 cut(s)	78, 288, 375, 530
BseNI	ACTGG	1 cut(s)	636
BseRI	GAGGAG	2 cut(s)	753, 976
BseX3I	CGGCCG	1 cut(s)	995
BseXI	GCAGC	5 cut(s)	110, 305, 421, 449, 931
Bsh1285I	CGRYCG	1 cut(s)	998
BshFI	GGCC	2 cut(s)	309, 997
BshNI	GGYRCC	1 cut(s)	256
BshVI	ATCGAT	1 cut(s)	784
BsiEI	CGRYCG	1 cut(s)	998
BsiHKAI	GWGCWC	2 cut(s)	72, 81
BslFI	GGGAC	2 cut(s)	490, 620
BslI	CCNNNNNNNGG	2 cut(s)	520, 993
BsmAI	GTCTC	2 cut(s)	728, 951
BsmFI	GGGAC	2 cut(s)	490, 620
BsnI	GGCC	2 cut(s)	309, 997
Bsp1286I	GDGCHC	2 cut(s)	72, 81
Bsp143I	GATC	5 cut(s)	39, 60, 781, 785, 892
BspACI	CCGC	3 cut(s)	8, 754, 998
BspANI	GGCC	2 cut(s)	309, 997
BspCNI	CTCAG	4 cut(s)	77, 287, 376, 531
BspDI	ATCGAT	1 cut(s)	784
BspLI	GGNNCC	4 cut(s)	258, 505, 506, 636
BspMAI	CTGCAG	3 cut(s)	128, 405, 439
BspT107I	GGYRCC	1 cut(s)	256
BsrBI	CCGCTC	1 cut(s)	8
BsrDI	GCAATG	2 cut(s)	494, 621
BsrI	ACTGG	1 cut(s)	636
BssECI	CCNNGG	2 cut(s)	342, 869
BssMI	GATC	5 cut(s)	39, 60, 781, 785, 892
BssNI	GRCGYC	1 cut(s)	23
BssSI	CACGAG	1 cut(s)	735
Bst2BI	CACGAG	1 cut(s)	735
Bst2UI	CCWGG	2 cut(s)	343, 870
Bst4CI	ACNGT	2 cut(s)	56, 688
Bst6I	CTCTTC	1 cut(s)	996
BstACI	GRCGYC	1 cut(s)	23
BstBAI	YACGTR	1 cut(s)	178
BstDEI	CTNAG	5 cut(s)	64, 234, 274, 384, 539
BstENI	CCTNNNNNAGG	1 cut(s)	518
BstF5I	GGATG	5 cut(s)	338, 385, 797, 886, 907
BstKTI	GATC	5 cut(s)	42, 63, 784, 788, 895
BstMAI	GTCTC	2 cut(s)	728, 951
BstMBI	GATC	5 cut(s)	39, 60, 781, 785, 892
BstMCI	CGRYCG	1 cut(s)	998
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 76, 293, 443
BstNI	CCWGG	2 cut(s)	343, 870
BstNSI	RCATGY	2 cut(s)	697, 760
BstSCI	CCNGG	2 cut(s)	341, 868
BstSFI	CTRYAG	4 cut(s)	124, 401, 435, 1001
BstSNI	TACGTA	1 cut(s)	178
BstV1I	GCAGC	5 cut(s)	110, 305, 421, 449, 931
BstX2I	RGATCY	1 cut(s)	60
BstYI	RGATCY	1 cut(s)	60
BstZI	CGGCCG	1 cut(s)	995
Bsu15I	ATCGAT	1 cut(s)	784
BsuRI	GGCC	2 cut(s)	309, 997
BsuTUI	ATCGAT	1 cut(s)	784
BtgZI	GCGATG	1 cut(s)	160
BtsCI	GGATG	5 cut(s)	338, 385, 797, 886, 907
BtsIMutI	CAGTG	1 cut(s)	629
CaiI	CAGNNNCTG	2 cut(s)	538, 869
Cfr13I	GGNCC	4 cut(s)	335, 370, 504, 634
ClaI	ATCGAT	1 cut(s)	784
CseI	GACGC	2 cut(s)	12, 429
Csp6I	GTAC	3 cut(s)	175, 179, 257
CviAII	CATG	4 cut(s)	509, 694, 757, 949
CviQI	GTAC	3 cut(s)	175, 179, 257
DdeI	CTNAG	5 cut(s)	64, 234, 274, 384, 539
DpnI	GATC	5 cut(s)	41, 62, 783, 787, 894
DpnII	GATC	5 cut(s)	39, 60, 781, 785, 892
EaeI	YGGCCR	2 cut(s)	307, 995
EagI	CGGCCG	1 cut(s)	995
Eam1104I	CTCTTC	1 cut(s)	996
EarI	CTCTTC	1 cut(s)	996
Ecl136II	GAGCTC	2 cut(s)	70, 79
EclXI	CGGCCG	1 cut(s)	995
Eco105I	TACGTA	1 cut(s)	178
Eco24I	GRGCYC	2 cut(s)	72, 81
Eco47I	GGWCC	4 cut(s)	335, 370, 504, 634
Eco52I	CGGCCG	1 cut(s)	995
Eco53kI	GAGCTC	2 cut(s)	70, 79
EcoICRI	GAGCTC	2 cut(s)	70, 79
EcoNI	CCTNNNNNAGG	1 cut(s)	518
EcoO109I	RGGNCCY	1 cut(s)	504
EcoRI	GAATTC	1 cut(s)	730
EcoRII	CCWGG	2 cut(s)	341, 868
EcoT22I	ATGCAT	1 cut(s)	797
EcoT38I	GRGCYC	2 cut(s)	72, 81
FaeI	CATG	4 cut(s)	512, 697, 760, 952
FaiI	YATR	9 cut(s)	333, 510, 562, 695, 758, 774, 821, 950, 1003
FaqI	GGGAC	2 cut(s)	490, 620
FatI	CATG	4 cut(s)	508, 693, 756, 948
FblI	GTMKAC	1 cut(s)	690
Fnu4HI	GCNGC	6 cut(s)	124, 294, 435, 438, 945, 998
FokI	GGATG	5 cut(s)	325, 392, 804, 893, 914
FriOI	GRGCYC	2 cut(s)	72, 81
Fsp4HI	GCNGC	6 cut(s)	124, 294, 435, 438, 945, 998
FspBI	CTAG	4 cut(s)	447, 500, 641, 720
GluI	GCNGC	6 cut(s)	124, 294, 435, 438, 945, 998
HaeIII	GGCC	2 cut(s)	309, 997
HgaI	GACGC	2 cut(s)	12, 429
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	4 cut(s)	512, 697, 760, 952
HinfI	GANTC	2 cut(s)	32, 281
HphI	GGTGA	1 cut(s)	584
Hpy166II	GTNNAC	2 cut(s)	456, 691
Hpy188I	TCNGA	3 cut(s)	60, 67, 592
Hpy188III	TCNNGA	8 cut(s)	324, 396, 472, 532, 727, 735, 766, 789
Hpy8I	GTNNAC	2 cut(s)	456, 691
Hpy99I	CGWCG	3 cut(s)	28, 423, 917
HpyAV	CCTTC	2 cut(s)	247, 857
HpyCH4III	ACNGT	2 cut(s)	56, 688
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	9 cut(s)	126, 169, 191, 403, 437, 547, 581, 795, 952
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 76, 293, 443
HpyF3I	CTNAG	5 cut(s)	64, 234, 274, 384, 539
HpySE526I	ACGT	1 cut(s)	177
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	4 cut(s)	512, 697, 760, 952
KflI	GGGWCCC	1 cut(s)	504
KpnI	GGTACC	1 cut(s)	260
Kzo9I	GATC	5 cut(s)	39, 60, 781, 785, 892
LmnI	GCTCC	3 cut(s)	5, 75, 467
Lsp1109I	GCAGC	5 cut(s)	110, 305, 421, 449, 931
LweI	GCATC	6 cut(s)	370, 736, 782, 804, 824, 892
MaeI	CTAG	4 cut(s)	447, 500, 641, 720
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	2 cut(s)	221, 922
MalI	GATC	5 cut(s)	41, 62, 783, 787, 894
MbiI	CCGCTC	1 cut(s)	8
MboI	GATC	5 cut(s)	39, 60, 781, 785, 892
MboII	GAAGA	2 cut(s)	818, 983
MflI	RGATCY	1 cut(s)	60
MhlI	GDGCHC	2 cut(s)	72, 81
MlsI	TGGCCA	1 cut(s)	309
MluCI	AATT	3 cut(s)	593, 730, 875
MluNI	TGGCCA	1 cut(s)	309
MmeI	TCCRAC	1 cut(s)	9
MnlI	CCTC	8 cut(s)	13, 361, 468, 517, 648, 731, 992, 997
Mox20I	TGGCCA	1 cut(s)	309
Mph1103I	ATGCAT	1 cut(s)	797
MscI	TGGCCA	1 cut(s)	309
MseI	TTAA	4 cut(s)	245, 411, 516, 552
Msp20I	TGGCCA	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	854
MspR9I	CCNGG	2 cut(s)	343, 870
MvaI	CCWGG	2 cut(s)	343, 870
MwoI	GCNNNNNNNGC	4 cut(s)	14, 76, 293, 443
NdeII	GATC	5 cut(s)	39, 60, 781, 785, 892
NlaIII	CATG	4 cut(s)	512, 697, 760, 952
NlaIV	GGNNCC	4 cut(s)	258, 505, 506, 636
NsiI	ATGCAT	1 cut(s)	797
NspI	RCATGY	2 cut(s)	697, 760
PcsI	WCGNNNNNNNCGW	2 cut(s)	32, 427
PfeI	GAWTC	2 cut(s)	32, 281
PkrI	GCNGC	6 cut(s)	125, 295, 436, 439, 946, 999
Ppu21I	YACGTR	1 cut(s)	178
PpuMI	RGGWCCY	1 cut(s)	504
Psp124BI	GAGCTC	2 cut(s)	72, 81
Psp5II	RGGWCCY	1 cut(s)	504
Psp6I	CCWGG	2 cut(s)	341, 868
PspGI	CCWGG	2 cut(s)	341, 868
PspN4I	GGNNCC	4 cut(s)	258, 505, 506, 636
PspPI	GGNCC	4 cut(s)	335, 370, 504, 634
PspPPI	RGGWCCY	1 cut(s)	504
PstI	CTGCAG	3 cut(s)	128, 405, 439
PstNI	CAGNNNCTG	2 cut(s)	538, 869
PsuI	RGATCY	1 cut(s)	60
PvuII	CAGCTG	1 cut(s)	854
RsaI	GTAC	3 cut(s)	176, 180, 258
RsaNI	GTAC	3 cut(s)	175, 179, 257
SacI	GAGCTC	2 cut(s)	72, 81
SaqAI	TTAA	4 cut(s)	245, 411, 516, 552
SatI	GCNGC	6 cut(s)	124, 294, 435, 438, 945, 998
Sau3AI	GATC	5 cut(s)	39, 60, 781, 785, 892
Sau96I	GGNCC	4 cut(s)	335, 370, 504, 634
ScrFI	CCNGG	2 cut(s)	343, 870
SduI	GDGCHC	2 cut(s)	72, 81
SfaNI	GCATC	6 cut(s)	370, 736, 782, 804, 824, 892
SfcI	CTRYAG	4 cut(s)	124, 401, 435, 1001
SinI	GGWCC	4 cut(s)	335, 370, 504, 634
SmlI	CTYRAG	4 cut(s)	322, 472, 725, 824
SmoI	CTYRAG	4 cut(s)	322, 472, 725, 824
SnaBI	TACGTA	1 cut(s)	178
Sse9I	AATT	3 cut(s)	593, 730, 875
SsiI	CCGC	3 cut(s)	8, 754, 998
SspI	AATATT	1 cut(s)	132
SspMI	CTAG	4 cut(s)	447, 500, 641, 720
SstI	GAGCTC	2 cut(s)	72, 81
StyD4I	CCNGG	2 cut(s)	341, 868
TaaI	ACNGT	2 cut(s)	56, 688
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	5 cut(s)	91, 279, 418, 784, 895
TasI	AATT	3 cut(s)	593, 730, 875
TauI	GCSGC	1 cut(s)	1000
TfiI	GAWTC	2 cut(s)	32, 281
Tru1I	TTAA	4 cut(s)	245, 411, 516, 552
Tru9I	TTAA	4 cut(s)	245, 411, 516, 552
TscAI	CASTG	1 cut(s)	636
TseI	GCWGC	5 cut(s)	123, 293, 434, 437, 944
TspDTI	ATGAA	2 cut(s)	632, 897
TspGWI	ACGGA	2 cut(s)	419, 930
TspRI	CASTG	1 cut(s)	636
VpaK11BI	GGWCC	4 cut(s)	335, 370, 504, 634
XagI	CCTNNNNNAGG	1 cut(s)	518
XapI	RAATTY	2 cut(s)	593, 730
XceI	RCATGY	2 cut(s)	697, 760
XmiI	GTMKAC	1 cut(s)	690
XspI	CTAG	4 cut(s)	447, 500, 641, 720
Zsp2I	ATGCAT	1 cut(s)	797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.