Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0019006

Physical Location & Seq

Genomic Coordinates Reverse (-)

61266878 .. 61267604

Gene Structure 727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009963

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGTCTCCAGATGTTGGCATGCAACTATAAGCCCAGGAATTATTGTAGACTCCAGTGTCATAGAGGTTACTGATGCATCTGTTCTTCTCAATTTTTGTGCTTGTTCTATTGTTCAATCCGGAGTTGCACAGCTTGAGGATCCTGTTGAGAGATCAGCAAATAGCAGTGATATTGGTGAGAGTGGTTCTGGTACCTATATCAGATGGCTGGATGACACACTGATACATTTTGCTTCGAAGACTGTGGAGGAAGATCCATCTTCTTTCTGCTTGTCATCCAACTTCTTCCTTTCTCGCCAACTCATGTACTACTTGATTAGATTGATCTTTAATAGTAATCCTGATGAGATAGCTTTCTTGGGGCTGATGCTGAACCATGAGGATGGTGGCGGGGTTCTATTCATGATCCAACCTACACTTCAATGTACCTTCGATGGTCCACCCATTCCTGTCCTAATAGACATTCGCTCTATCTGTCTGGATGTTATCTTGCTCTTTGTTTCGTACTTTCATGTGGTTGTTCATTATCGGTCGATGATTGCTCGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001501 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005798 GO:0005829 GO:0006810 GO:0006888 GO:0006900 GO:0006996 GO:0007275 GO:0008150 GO:0008270 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009888 GO:0009987 GO:0012505 GO:0012506 GO:0012507 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019898 GO:0022607 GO:0030117 GO:0030120 GO:0030127 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032991 GO:0033333 GO:0033334 GO:0033339 GO:0034622 GO:0035107 GO:0035138 GO:0035459 GO:0043009 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046907 GO:0046914 GO:0048193 GO:0048194 GO:0048475 GO:0048513 GO:0048562 GO:0048568 GO:0048598 GO:0048701 GO:0048702 GO:0048704 GO:0048705 GO:0048706 GO:0048731 GO:0048736 GO:0048856 GO:0051179 GO:0051216 GO:0051234 GO:0051641 GO:0051649 GO:0051668 GO:0061024 GO:0061448 GO:0065003 GO:0070971 GO:0071840 GO:0090110 GO:0090114 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:1904888

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

184

Amino Acids

20.36

Weight (kDa)

4.58

Isoelectric Point (pI)

59.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019006)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0389651
rosa_laevigata	RLG00000009963
rosa_multiflora	Rmu_co8520825.1_g000002 Rmu_sc0007419.1_g000007
rosa_roxburghii	Rroxscaffold_5G00335650
rosa_samantha	Rh2AG407800 Rh2CG393800 Rh2DG427500 Rh4BG022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	56
Acc65I	GGTACC	1 cut(s)	191
AccB1I	GGYRCC	1 cut(s)	191
AccB7I	CCANNNNNTGG	1 cut(s)	15
AccI	GTMKAC	1 cut(s)	48
AccIII	TCCGGA	1 cut(s)	119
AciI	CCGC	1 cut(s)	390
AclWI	GGATC	4 cut(s)	134, 147, 248, 400
AfaI	GTAC	4 cut(s)	193, 308, 427, 506
AfiI	CCNNNNNNNGG	1 cut(s)	15
AgsI	TTSAA	2 cut(s)	116, 422
AjnI	CCWGG	1 cut(s)	34
AjuI	GAANNNNNNNTTGG	2 cut(s)	402, 434
AluBI	AGCT	2 cut(s)	133, 353
AluI	AGCT	2 cut(s)	133, 353
Alw26I	GTCTC	1 cut(s)	10
AlwI	GGATC	4 cut(s)	134, 147, 248, 400
Aor13HI	TCCGGA	1 cut(s)	119
Asp718I	GGTACC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	437
AsuHPI	GGTGA	1 cut(s)	188
AsuII	TTCGAA	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	437
BamHI	GGATCC	1 cut(s)	139
BanI	GGYRCC	1 cut(s)	191
BbsI	GAAGAC	1 cut(s)	245
BccI	CCATC	4 cut(s)	198, 265, 377, 428
BciT130I	CCWGG	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	10
Bme1390I	CCNGG	1 cut(s)	36
Bme18I	GGWCC	1 cut(s)	437
BmgT120I	GGNCC	1 cut(s)	437
BmiI	GGNNCC	2 cut(s)	141, 193
BmrFI	CCNGG	1 cut(s)	36
BmsI	GCATC	3 cut(s)	64, 86, 357
BpiI	GAAGAC	1 cut(s)	245
BpmI	CTGGAG	1 cut(s)	37
Bpu14I	TTCGAA	1 cut(s)	236
BpuEI	CTTGAG	1 cut(s)	155
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	1 cut(s)	34
BsaWI	WCCGGW	1 cut(s)	119
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
Bse1I	ACTGG	1 cut(s)	54
BseAI	TCCGGA	1 cut(s)	119
BseBI	CCWGG	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	34
BseGI	GGATG	4 cut(s)	217, 275, 388, 487
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseNI	ACTGG	1 cut(s)	54
Bsh1285I	CGRYCG	1 cut(s)	533
BshNI	GGYRCC	1 cut(s)	191
BsiEI	CGRYCG	1 cut(s)	533
BsiSI	CCGG	1 cut(s)	120
BslI	CCNNNNNNNGG	1 cut(s)	15
BsmAI	GTCTC	1 cut(s)	10
Bso31I	GGTCTC	1 cut(s)	10
Bsp119I	TTCGAA	1 cut(s)	236
Bsp13I	TCCGGA	1 cut(s)	119
Bsp143I	GATC	5 cut(s)	139, 152, 253, 324, 405
BspACI	CCGC	1 cut(s)	390
BspEI	TCCGGA	1 cut(s)	119
BspHI	TCATGA	1 cut(s)	402
BspLI	GGNNCC	2 cut(s)	141, 193
BspPI	GGATC	4 cut(s)	134, 147, 248, 400
BspT104I	TTCGAA	1 cut(s)	236
BspT107I	GGYRCC	1 cut(s)	191
BspTNI	GGTCTC	1 cut(s)	10
BsrI	ACTGG	1 cut(s)	54
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	5 cut(s)	139, 152, 253, 324, 405
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	1 cut(s)	244
BstBI	TTCGAA	1 cut(s)	236
BstC8I	GCNNGC	1 cut(s)	21
BstF5I	GGATG	4 cut(s)	217, 275, 388, 487
BstKTI	GATC	5 cut(s)	142, 155, 256, 327, 408
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	5 cut(s)	139, 152, 253, 324, 405
BstMCI	CGRYCG	1 cut(s)	533
BstNI	CCWGG	1 cut(s)	36
BstNSI	RCATGY	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	34
BstV2I	GAAGAC	1 cut(s)	245
BstX2I	RGATCY	2 cut(s)	139, 253
BstXI	CCANNNNNNTGG	1 cut(s)	383
BstYI	RGATCY	2 cut(s)	139, 253
BtsCI	GGATG	4 cut(s)	217, 275, 388, 487
BtsI	GCAGTG	1 cut(s)	172
BtsIMutI	CAGTG	3 cut(s)	61, 172, 218
Cac8I	GCNNGC	1 cut(s)	21
CciI	TCATGA	1 cut(s)	402
Cfr13I	GGNCC	1 cut(s)	437
Csp6I	GTAC	4 cut(s)	192, 307, 426, 505
CviAII	CATG	5 cut(s)	20, 304, 377, 403, 512
CviJI	RGCY	5 cut(s)	33, 133, 208, 353, 364
CviKI_1	RGCY	5 cut(s)	33, 133, 208, 353, 364
CviQI	GTAC	4 cut(s)	192, 307, 426, 505
DpnI	GATC	5 cut(s)	141, 154, 255, 326, 407
DpnII	GATC	5 cut(s)	139, 152, 253, 324, 405
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
Eco31I	GGTCTC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	437
EcoRII	CCWGG	1 cut(s)	34
EcoT22I	ATGCAT	1 cut(s)	79
FaeI	CATG	5 cut(s)	23, 307, 380, 406, 515
FaiI	YATR	8 cut(s)	21, 29, 62, 198, 305, 378, 404, 513
FatI	CATG	5 cut(s)	19, 303, 376, 402, 511
FauI	CCCGC	1 cut(s)	383
FblI	GTMKAC	1 cut(s)	48
FokI	GGATG	4 cut(s)	224, 262, 395, 494
GsuI	CTGGAG	1 cut(s)	37
HapII	CCGG	1 cut(s)	120
Hin1II	CATG	5 cut(s)	23, 307, 380, 406, 515
HinfI	GANTC	2 cut(s)	50, 546
HpaII	CCGG	1 cut(s)	120
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	2 cut(s)	49, 440
Hpy188I	TCNGA	2 cut(s)	203, 551
Hpy188III	TCNNGA	5 cut(s)	9, 120, 341, 403, 479
Hpy8I	GTNNAC	2 cut(s)	49, 440
HpyAV	CCTTC	1 cut(s)	439
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4V	TGCA	3 cut(s)	23, 77, 128
Hsp92II	CATG	5 cut(s)	23, 307, 380, 406, 515
Kpn2I	TCCGGA	1 cut(s)	119
KpnI	GGTACC	1 cut(s)	195
Kzo9I	GATC	5 cut(s)	139, 152, 253, 324, 405
LweI	GCATC	3 cut(s)	64, 86, 357
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	5 cut(s)	141, 154, 255, 326, 407
MboI	GATC	5 cut(s)	139, 152, 253, 324, 405
MboII	GAAGA	5 cut(s)	77, 250, 252, 263, 277
MflI	RGATCY	2 cut(s)	139, 253
MluCI	AATT	2 cut(s)	39, 91
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	2 cut(s)	303, 433
MnlI	CCTC	4 cut(s)	58, 130, 241, 373
Mph1103I	ATGCAT	1 cut(s)	79
MroI	TCCGGA	1 cut(s)	119
MseI	TTAA	1 cut(s)	330
MslI	CAYNNNNRTG	2 cut(s)	381, 421
MspI	CCGG	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	36
NdeII	GATC	5 cut(s)	139, 152, 253, 324, 405
NlaIII	CATG	5 cut(s)	23, 307, 380, 406, 515
NlaIV	GGNNCC	2 cut(s)	141, 193
NsiI	ATGCAT	1 cut(s)	79
NspI	RCATGY	1 cut(s)	23
NspV	TTCGAA	1 cut(s)	236
PaeI	GCATGC	1 cut(s)	23
PagI	TCATGA	1 cut(s)	402
PfeI	GAWTC	1 cut(s)	546
PflMI	CCANNNNNTGG	1 cut(s)	15
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	34
PspN4I	GGNNCC	2 cut(s)	141, 193
PspPI	GGNCC	1 cut(s)	437
PsuI	RGATCY	2 cut(s)	139, 253
RsaI	GTAC	4 cut(s)	193, 308, 427, 506
RsaNI	GTAC	4 cut(s)	192, 307, 426, 505
RseI	CAYNNNNRTG	2 cut(s)	381, 421
SaqAI	TTAA	1 cut(s)	330
Sau3AI	GATC	5 cut(s)	139, 152, 253, 324, 405
Sau96I	GGNCC	1 cut(s)	437
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	1 cut(s)	36
SetI	ASST	6 cut(s)	69, 135, 197, 355, 415, 431
SfaNI	GCATC	3 cut(s)	64, 86, 357
SfuI	TTCGAA	1 cut(s)	236
SinI	GGWCC	1 cut(s)	437
SmiMI	CAYNNNNRTG	2 cut(s)	381, 421
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	2 cut(s)	39, 91
SsiI	CCGC	1 cut(s)	390
StyD4I	CCNGG	1 cut(s)	34
TaaI	ACNGT	1 cut(s)	244
TaqI	TCGA	4 cut(s)	236, 432, 533, 544
TaqII	GACCGA	1 cut(s)	519
TasI	AATT	2 cut(s)	39, 91
TatI	WGTACW	1 cut(s)	306
TfiI	GAWTC	1 cut(s)	546
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	3 cut(s)	61, 172, 225
TspDTI	ATGAA	3 cut(s)	391, 500, 512
TspRI	CASTG	3 cut(s)	61, 172, 225
Van91I	CCANNNNNTGG	1 cut(s)	15
VpaK11BI	GGWCC	1 cut(s)	437
XceI	RCATGY	1 cut(s)	23
XcmI	CCANNNNNNNNNTGG	1 cut(s)	383
XmiI	GTMKAC	1 cut(s)	48
Zsp2I	ATGCAT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.