Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0019006

Physical Location & Seq

Genomic Coordinates Forward (+)

3435935 .. 3436899

Gene Structure 965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG022500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGTGAACATGTTTTTGTTCACAACCTTGAAATTTCCGAGTCCTCGAAGGTGGTGGTGTTTCACGGATAAATGGATCTTTCATATTTTCAGGACTTGCATTGGCTCCAGGATCATGGTCTCCAGATGTTGGCATGCAACTATAAGCCCAGGAATTATTGTAGACTCCAGTGTCATAGAGGTTACTGATGCATCTATTCTTCTCAATTTTTATGGTTGTTCTCTTGTTCAATCCGGAGTTGCACAGCTTGAGGATCCTGTTGAGAGATCAGGTGAGTTCATGCTGCTAGGCGAGTCATTTGAGTCGGATCAGTTGAGAAGATGTTTGTGGCACATTTGTACTCGTGATGAAGAGGATAAACGAAGATTGTATTGTGATGCAAATATTGAGATACGCTTGTTTCTCATCGGAAAGCCAAAAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001501 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005798 GO:0005829 GO:0006810 GO:0006888 GO:0006900 GO:0006996 GO:0007275 GO:0008150 GO:0008270 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009888 GO:0009987 GO:0012505 GO:0012506 GO:0012507 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019898 GO:0022607 GO:0030117 GO:0030120 GO:0030127 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032991 GO:0033333 GO:0033334 GO:0033339 GO:0034622 GO:0035107 GO:0035138 GO:0035459 GO:0043009 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046907 GO:0046914 GO:0048193 GO:0048194 GO:0048475 GO:0048513 GO:0048562 GO:0048568 GO:0048598 GO:0048701 GO:0048702 GO:0048704 GO:0048705 GO:0048706 GO:0048731 GO:0048736 GO:0048856 GO:0051179 GO:0051216 GO:0051234 GO:0051641 GO:0051649 GO:0051668 GO:0061024 GO:0061448 GO:0065003 GO:0070971 GO:0071840 GO:0090110 GO:0090114 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:1904888

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

141

Amino Acids

16.5

Weight (kDa)

6.81

Isoelectric Point (pI)

82.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019006)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0389651
rosa_laevigata	RLG00000009963
rosa_multiflora	Rmu_co8520825.1_g000002 Rmu_sc0007419.1_g000007
rosa_roxburghii	Rroxscaffold_5G00335650
rosa_samantha	Rh2AG407800 Rh2CG393800 Rh2DG427500 Rh4BG022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
AccB7I	CCANNNNNTGG	1 cut(s)	129
AccI	GTMKAC	1 cut(s)	162
AccIII	TCCGGA	1 cut(s)	233
AclWI	GGATC	5 cut(s)	83, 119, 248, 261, 315
AcsI	RAATTY	1 cut(s)	32
AfaI	GTAC	1 cut(s)	340
AfiI	CCNNNNNNNGG	1 cut(s)	129
AflIII	ACRYGT	1 cut(s)	9
AgsI	TTSAA	2 cut(s)	31, 230
AjnI	CCWGG	2 cut(s)	107, 148
AluBI	AGCT	1 cut(s)	247
AluI	AGCT	1 cut(s)	247
Alw26I	GTCTC	1 cut(s)	124
AlwI	GGATC	5 cut(s)	83, 119, 248, 261, 315
Aor13HI	TCCGGA	1 cut(s)	233
ApeKI	GCWGC	1 cut(s)	283
ApoI	RAATTY	1 cut(s)	32
AsuHPI	GGTGA	2 cut(s)	16, 284
BaeI	ACNNNNGTAYC	2 cut(s)	383, 416
BamHI	GGATCC	1 cut(s)	253
BauI	CACGAG	1 cut(s)	342
BbvI	GCAGC	1 cut(s)	270
BciT130I	CCWGG	2 cut(s)	109, 150
BcoDI	GTCTC	1 cut(s)	124
BfaI	CTAG	1 cut(s)	287
BisI	GCNGC	1 cut(s)	284
BlsI	GCNGC	1 cut(s)	285
Bme1390I	CCNGG	2 cut(s)	109, 150
BmiI	GGNNCC	2 cut(s)	106, 255
BmrFI	CCNGG	2 cut(s)	109, 150
BmsI	GCATC	3 cut(s)	178, 200, 367
BpmI	CTGGAG	3 cut(s)	91, 106, 151
BpuEI	CTTGAG	1 cut(s)	269
BsaI	GGTCTC	1 cut(s)	124
BsaJI	CCNNGG	1 cut(s)	148
BsaWI	WCCGGW	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
Bse1I	ACTGG	1 cut(s)	168
BseAI	TCCGGA	1 cut(s)	233
BseBI	CCWGG	2 cut(s)	109, 150
BseDI	CCNNGG	1 cut(s)	148
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseNI	ACTGG	1 cut(s)	168
BseXI	GCAGC	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	234
BslI	CCNNNNNNNGG	1 cut(s)	129
BsmAI	GTCTC	1 cut(s)	124
Bso31I	GGTCTC	1 cut(s)	124
Bsp13I	TCCGGA	1 cut(s)	233
Bsp143I	GATC	5 cut(s)	75, 111, 253, 266, 307
BspEI	TCCGGA	1 cut(s)	233
BspLI	GGNNCC	2 cut(s)	106, 255
BspPI	GGATC	5 cut(s)	83, 119, 248, 261, 315
BspTNI	GGTCTC	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	168
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	5 cut(s)	75, 111, 253, 266, 307
BssSI	CACGAG	1 cut(s)	342
Bst2BI	CACGAG	1 cut(s)	342
Bst2UI	CCWGG	2 cut(s)	109, 150
Bst6I	CTCTTC	1 cut(s)	345
BstC8I	GCNNGC	1 cut(s)	135
BstKTI	GATC	5 cut(s)	78, 114, 256, 269, 310
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	5 cut(s)	75, 111, 253, 266, 307
BstNI	CCWGG	2 cut(s)	109, 150
BstNSI	RCATGY	2 cut(s)	13, 137
BstSCI	CCNGG	2 cut(s)	107, 148
BstV1I	GCAGC	1 cut(s)	270
BstX2I	RGATCY	2 cut(s)	75, 253
BstXI	CCANNNNNNTGG	1 cut(s)	115
BstYI	RGATCY	2 cut(s)	75, 253
BtsIMutI	CAGTG	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	135
Csp6I	GTAC	1 cut(s)	339
CviAII	CATG	4 cut(s)	10, 115, 134, 280
CviJI	RGCY	4 cut(s)	105, 147, 247, 415
CviKI_1	RGCY	4 cut(s)	105, 147, 247, 415
CviQI	GTAC	1 cut(s)	339
DpnI	GATC	5 cut(s)	77, 113, 255, 268, 309
DpnII	GATC	5 cut(s)	75, 111, 253, 266, 307
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Eco31I	GGTCTC	1 cut(s)	124
EcoRII	CCWGG	2 cut(s)	107, 148
EcoT22I	ATGCAT	1 cut(s)	193
FaeI	CATG	4 cut(s)	13, 118, 137, 283
FaiI	YATR	9 cut(s)	11, 84, 116, 135, 143, 176, 213, 281, 424
FatI	CATG	4 cut(s)	9, 114, 133, 279
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	1 cut(s)	284
Fsp4HI	GCNGC	1 cut(s)	284
FspBI	CTAG	1 cut(s)	287
GluI	GCNGC	1 cut(s)	284
GsuI	CTGGAG	3 cut(s)	91, 106, 151
HapII	CCGG	1 cut(s)	234
Hin1II	CATG	4 cut(s)	13, 118, 137, 283
HinfI	GANTC	4 cut(s)	40, 164, 293, 302
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	2 cut(s)	16, 284
Hpy166II	GTNNAC	3 cut(s)	7, 21, 163
Hpy188I	TCNGA	3 cut(s)	39, 307, 410
Hpy188III	TCNNGA	4 cut(s)	91, 123, 234, 344
Hpy8I	GTNNAC	3 cut(s)	7, 21, 163
HpyAV	CCTTC	1 cut(s)	42
HpyCH4V	TGCA	5 cut(s)	99, 137, 191, 242, 380
Hsp92II	CATG	4 cut(s)	13, 118, 137, 283
Kpn2I	TCCGGA	1 cut(s)	233
Kzo9I	GATC	5 cut(s)	75, 111, 253, 266, 307
LmnI	GCTCC	1 cut(s)	110
Lsp1109I	GCAGC	1 cut(s)	270
LweI	GCATC	3 cut(s)	178, 200, 367
MaeI	CTAG	1 cut(s)	287
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	5 cut(s)	77, 113, 255, 268, 309
MboI	GATC	5 cut(s)	75, 111, 253, 266, 307
MboII	GAAGA	4 cut(s)	191, 330, 362, 375
MflI	RGATCY	2 cut(s)	75, 253
MluCI	AATT	3 cut(s)	32, 153, 205
MlyI	GAGTC	4 cut(s)	49, 158, 302, 311
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	4 cut(s)	54, 172, 244, 346
Mph1103I	ATGCAT	1 cut(s)	193
MroI	TCCGGA	1 cut(s)	233
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	2 cut(s)	109, 150
MvaI	CCWGG	2 cut(s)	109, 150
NdeII	GATC	5 cut(s)	75, 111, 253, 266, 307
NlaIII	CATG	4 cut(s)	13, 118, 137, 283
NlaIV	GGNNCC	2 cut(s)	106, 255
NsiI	ATGCAT	1 cut(s)	193
NspI	RCATGY	2 cut(s)	13, 137
PaeI	GCATGC	1 cut(s)	137
PciI	ACATGT	1 cut(s)	9
PflMI	CCANNNNNTGG	1 cut(s)	129
PfoI	TCCNGGA	1 cut(s)	107
PkrI	GCNGC	1 cut(s)	285
PleI	GAGTC	4 cut(s)	48, 158, 301, 310
PpsI	GAGTC	4 cut(s)	48, 158, 301, 310
PscI	ACATGT	1 cut(s)	9
Psp6I	CCWGG	2 cut(s)	107, 148
PspGI	CCWGG	2 cut(s)	107, 148
PspN4I	GGNNCC	2 cut(s)	106, 255
PsuI	RGATCY	2 cut(s)	75, 253
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
SatI	GCNGC	1 cut(s)	284
Sau3AI	GATC	5 cut(s)	75, 111, 253, 266, 307
SchI	GAGTC	4 cut(s)	49, 158, 302, 311
ScrFI	CCNGG	2 cut(s)	109, 150
SetI	ASST	5 cut(s)	29, 53, 183, 249, 274
SfaNI	GCATC	3 cut(s)	178, 200, 367
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
SphI	GCATGC	1 cut(s)	137
Sse9I	AATT	3 cut(s)	32, 153, 205
SspI	AATATT	1 cut(s)	385
SspMI	CTAG	1 cut(s)	287
StyD4I	CCNGG	2 cut(s)	107, 148
TaqI	TCGA	1 cut(s)	46
TasI	AATT	3 cut(s)	32, 153, 205
TatI	WGTACW	1 cut(s)	338
TscAI	CASTG	1 cut(s)	175
TseI	GCWGC	1 cut(s)	283
TspDTI	ATGAA	3 cut(s)	71, 268, 363
TspGWI	ACGGA	1 cut(s)	80
TspRI	CASTG	1 cut(s)	175
Van91I	CCANNNNNTGG	1 cut(s)	129
XapI	RAATTY	1 cut(s)	32
XceI	RCATGY	2 cut(s)	13, 137
XmiI	GTMKAC	1 cut(s)	162
XspI	CTAG	1 cut(s)	287
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.