Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0019006

Physical Location & Seq

Genomic Coordinates Forward (+)

3071845 .. 3072546

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00335650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGATGATCGTTACAGGACTTTCACTGGCTCCAGGATCATGGTCTCCAGATGTTGGCATGCAACTATAAGCCCAGGAATTATTGTAAACTCCAGTGTCATAGAGGTTACTGATGCATCTATTCTTCTCAATTTTTATGCTTGTTCTCTTGTTCAATCCGGAGTTGCACAGCTTGAGGATCCTGTTGAGAGATCAGGTGAGTTCATGCTGCTAGGCGAGTCATTTGAGTCGGATCAGTTGAGAAGATGTTTGTGGCACATTTGTACTCGTGATGAAGAGGATAAACGAAGATTGTATTGTGATGCAAATATTGATAGTGGCCACTACAAGATGTCAACATGGGTGAAGCCCTATGTGCTTGTTTCTCATCGGAAAGCAAAAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001501 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005798 GO:0005829 GO:0006810 GO:0006888 GO:0006900 GO:0006996 GO:0007275 GO:0008150 GO:0008270 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009888 GO:0009987 GO:0012505 GO:0012506 GO:0012507 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019898 GO:0022607 GO:0030117 GO:0030120 GO:0030127 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032991 GO:0033333 GO:0033334 GO:0033339 GO:0034622 GO:0035107 GO:0035138 GO:0035459 GO:0043009 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046907 GO:0046914 GO:0048193 GO:0048194 GO:0048475 GO:0048513 GO:0048562 GO:0048568 GO:0048598 GO:0048701 GO:0048702 GO:0048704 GO:0048705 GO:0048706 GO:0048731 GO:0048736 GO:0048856 GO:0051179 GO:0051216 GO:0051234 GO:0051641 GO:0051649 GO:0051668 GO:0061024 GO:0061448 GO:0065003 GO:0070971 GO:0071840 GO:0090110 GO:0090114 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:1904888

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

128

Amino Acids

14.75

Weight (kDa)

6.41

Isoelectric Point (pI)

80.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019006)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0389651
rosa_laevigata	RLG00000009963
rosa_multiflora	Rmu_co8520825.1_g000002 Rmu_sc0007419.1_g000007
rosa_roxburghii	Rroxscaffold_5G00335650
rosa_samantha	Rh2AG407800 Rh2CG393800 Rh2DG427500 Rh4BG022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	54
AccIII	TCCGGA	1 cut(s)	158
AclWI	GGATC	4 cut(s)	44, 173, 186, 240
AcoI	YGGCCR	1 cut(s)	319
AfaI	GTAC	1 cut(s)	265
AfiI	CCNNNNNNNGG	1 cut(s)	54
AgsI	TTSAA	1 cut(s)	155
AjnI	CCWGG	2 cut(s)	32, 73
AluBI	AGCT	1 cut(s)	172
AluI	AGCT	1 cut(s)	172
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	4 cut(s)	44, 173, 186, 240
Aor13HI	TCCGGA	1 cut(s)	158
AoxI	GGCC	1 cut(s)	319
ApeKI	GCWGC	1 cut(s)	208
AsuHPI	GGTGA	2 cut(s)	209, 355
BalI	TGGCCA	1 cut(s)	321
BamHI	GGATCC	1 cut(s)	178
BauI	CACGAG	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	195
BciT130I	CCWGG	2 cut(s)	34, 75
BcoDI	GTCTC	1 cut(s)	49
BfaI	CTAG	1 cut(s)	212
BisI	GCNGC	1 cut(s)	209
BlsI	GCNGC	1 cut(s)	210
Bme1390I	CCNGG	2 cut(s)	34, 75
BmiI	GGNNCC	2 cut(s)	31, 180
BmrFI	CCNGG	2 cut(s)	34, 75
BmsI	GCATC	3 cut(s)	103, 125, 292
BpmI	CTGGAG	3 cut(s)	16, 31, 76
BpuEI	CTTGAG	1 cut(s)	194
BsaI	GGTCTC	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	73
BsaWI	WCCGGW	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
Bse1I	ACTGG	2 cut(s)	31, 93
BseAI	TCCGGA	1 cut(s)	158
BseBI	CCWGG	2 cut(s)	34, 75
BseDI	CCNNGG	1 cut(s)	73
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseNI	ACTGG	2 cut(s)	31, 93
BseXI	GCAGC	1 cut(s)	195
BshFI	GGCC	1 cut(s)	321
BsiSI	CCGG	1 cut(s)	159
BslI	CCNNNNNNNGG	1 cut(s)	54
BsmAI	GTCTC	1 cut(s)	49
BsnI	GGCC	1 cut(s)	321
Bso31I	GGTCTC	1 cut(s)	49
Bsp13I	TCCGGA	1 cut(s)	158
Bsp143I	GATC	5 cut(s)	7, 36, 178, 191, 232
BspANI	GGCC	1 cut(s)	321
BspEI	TCCGGA	1 cut(s)	158
BspLI	GGNNCC	2 cut(s)	31, 180
BspPI	GGATC	4 cut(s)	44, 173, 186, 240
BspTNI	GGTCTC	1 cut(s)	49
BsrI	ACTGG	2 cut(s)	31, 93
BssECI	CCNNGG	1 cut(s)	73
BssMI	GATC	5 cut(s)	7, 36, 178, 191, 232
BssSI	CACGAG	1 cut(s)	267
Bst2BI	CACGAG	1 cut(s)	267
Bst2UI	CCWGG	2 cut(s)	34, 75
Bst6I	CTCTTC	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	5 cut(s)	10, 39, 181, 194, 235
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	5 cut(s)	7, 36, 178, 191, 232
BstMWI	GCNNNNNNNGC	1 cut(s)	355
BstNI	CCWGG	2 cut(s)	34, 75
BstNSI	RCATGY	1 cut(s)	62
BstSCI	CCNGG	2 cut(s)	32, 73
BstV1I	GCAGC	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	178
BstXI	CCANNNNNNTGG	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	178
BsuRI	GGCC	1 cut(s)	321
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	2 cut(s)	24, 100
Cac8I	GCNNGC	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	264
CviAII	CATG	4 cut(s)	40, 59, 205, 339
CviJI	RGCY	5 cut(s)	30, 72, 172, 321, 349
CviKI_1	RGCY	5 cut(s)	30, 72, 172, 321, 349
CviQI	GTAC	1 cut(s)	264
DpnI	GATC	5 cut(s)	9, 38, 180, 193, 234
DpnII	GATC	5 cut(s)	7, 36, 178, 191, 232
EaeI	YGGCCR	1 cut(s)	319
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Eco31I	GGTCTC	1 cut(s)	49
EcoRII	CCWGG	2 cut(s)	32, 73
EcoT22I	ATGCAT	1 cut(s)	118
FaeI	CATG	4 cut(s)	43, 62, 208, 342
FaiI	YATR	9 cut(s)	41, 60, 68, 101, 138, 206, 340, 354, 385
FatI	CATG	4 cut(s)	39, 58, 204, 338
Fnu4HI	GCNGC	1 cut(s)	209
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	209
FspBI	CTAG	1 cut(s)	212
GluI	GCNGC	1 cut(s)	209
GsuI	CTGGAG	3 cut(s)	16, 31, 76
HaeIII	GGCC	1 cut(s)	321
HapII	CCGG	1 cut(s)	159
Hin1II	CATG	4 cut(s)	43, 62, 208, 342
HincII	GTYRAC	1 cut(s)	336
HindII	GTYRAC	1 cut(s)	336
HinfI	GANTC	2 cut(s)	218, 227
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	2 cut(s)	209, 355
Hpy166II	GTNNAC	2 cut(s)	88, 336
Hpy188I	TCNGA	2 cut(s)	232, 372
Hpy188III	TCNNGA	3 cut(s)	48, 159, 269
Hpy8I	GTNNAC	2 cut(s)	88, 336
HpyCH4V	TGCA	4 cut(s)	62, 116, 167, 305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	355
Hsp92II	CATG	4 cut(s)	43, 62, 208, 342
Kpn2I	TCCGGA	1 cut(s)	158
Kzo9I	GATC	5 cut(s)	7, 36, 178, 191, 232
LmnI	GCTCC	1 cut(s)	35
Lsp1109I	GCAGC	1 cut(s)	195
LweI	GCATC	3 cut(s)	103, 125, 292
MaeI	CTAG	1 cut(s)	212
MaeIII	GTNAC	2 cut(s)	11, 106
MalI	GATC	5 cut(s)	9, 38, 180, 193, 234
MboI	GATC	5 cut(s)	7, 36, 178, 191, 232
MboII	GAAGA	4 cut(s)	116, 255, 287, 300
MflI	RGATCY	1 cut(s)	178
MlsI	TGGCCA	1 cut(s)	321
MluCI	AATT	2 cut(s)	78, 130
MluNI	TGGCCA	1 cut(s)	321
MlyI	GAGTC	2 cut(s)	227, 236
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	3 cut(s)	97, 169, 271
Mox20I	TGGCCA	1 cut(s)	321
Mph1103I	ATGCAT	1 cut(s)	118
MroI	TCCGGA	1 cut(s)	158
MscI	TGGCCA	1 cut(s)	321
Msp20I	TGGCCA	1 cut(s)	321
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	2 cut(s)	34, 75
MvaI	CCWGG	2 cut(s)	34, 75
MwoI	GCNNNNNNNGC	1 cut(s)	355
NdeII	GATC	5 cut(s)	7, 36, 178, 191, 232
NlaIII	CATG	4 cut(s)	43, 62, 208, 342
NlaIV	GGNNCC	2 cut(s)	31, 180
NsiI	ATGCAT	1 cut(s)	118
NspI	RCATGY	1 cut(s)	62
PaeI	GCATGC	1 cut(s)	62
PflMI	CCANNNNNTGG	1 cut(s)	54
PfoI	TCCNGGA	1 cut(s)	32
PkrI	GCNGC	1 cut(s)	210
PleI	GAGTC	2 cut(s)	226, 235
PpsI	GAGTC	2 cut(s)	226, 235
Psp6I	CCWGG	2 cut(s)	32, 73
PspGI	CCWGG	2 cut(s)	32, 73
PspN4I	GGNNCC	2 cut(s)	31, 180
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
SatI	GCNGC	1 cut(s)	209
Sau3AI	GATC	5 cut(s)	7, 36, 178, 191, 232
SchI	GAGTC	2 cut(s)	227, 236
ScrFI	CCNGG	2 cut(s)	34, 75
SetI	ASST	3 cut(s)	108, 174, 199
SfaNI	GCATC	3 cut(s)	103, 125, 292
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SphI	GCATGC	1 cut(s)	62
Sse9I	AATT	2 cut(s)	78, 130
SspI	AATATT	1 cut(s)	310
SspMI	CTAG	1 cut(s)	212
StyD4I	CCNGG	2 cut(s)	32, 73
TasI	AATT	2 cut(s)	78, 130
TatI	WGTACW	1 cut(s)	263
TscAI	CASTG	2 cut(s)	31, 100
TseI	GCWGC	1 cut(s)	208
TspDTI	ATGAA	2 cut(s)	193, 288
TspRI	CASTG	2 cut(s)	31, 100
Van91I	CCANNNNNTGG	1 cut(s)	54
XceI	RCATGY	1 cut(s)	62
XspI	CTAG	1 cut(s)	212
Zsp2I	ATGCAT	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.