Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0019006

Physical Location & Seq

Genomic Coordinates Forward (+)

61874308 .. 61874616

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG427500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGTCTCCAGATCTTGGCATGCAACTATAAGCCCAGGAATTATTGTAGACTCCAGTGTCATAGATGTTACTGATGCATCTATTCTTCTCAATTTTTATGCTTGCTCTCTTGATCAATCCAGAGTTGCACAGCTTGAGAATCCTGTTGAGAGATCAGGTGACTTCATGCTGCTAGGCGAGTCATTTGAGTCGGATCAGTTCGGAAGATGTTTCTGGCACATTTGTACTCGTGACGAAGAGGATAAACAAAGATTGTATTGTGATGCAAATATTGAGATAGTGGCCACTAAAAGATGTCAACATGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001501 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005798 GO:0005829 GO:0006810 GO:0006888 GO:0006900 GO:0006996 GO:0007275 GO:0008150 GO:0008270 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009888 GO:0009987 GO:0012505 GO:0012506 GO:0012507 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019898 GO:0022607 GO:0030117 GO:0030120 GO:0030127 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032991 GO:0033333 GO:0033334 GO:0033339 GO:0034622 GO:0035107 GO:0035138 GO:0035459 GO:0043009 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046907 GO:0046914 GO:0048193 GO:0048194 GO:0048475 GO:0048513 GO:0048562 GO:0048568 GO:0048598 GO:0048701 GO:0048702 GO:0048704 GO:0048705 GO:0048706 GO:0048731 GO:0048736 GO:0048856 GO:0051179 GO:0051216 GO:0051234 GO:0051641 GO:0051649 GO:0051668 GO:0061024 GO:0061448 GO:0065003 GO:0070971 GO:0071840 GO:0090110 GO:0090114 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:1904888

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

102

Amino Acids

11.57

Weight (kDa)

4.71

Isoelectric Point (pI)

75.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019006)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0389651
rosa_laevigata	RLG00000009963
rosa_multiflora	Rmu_co8520825.1_g000002 Rmu_sc0007419.1_g000007
rosa_roxburghii	Rroxscaffold_5G00335650
rosa_samantha	Rh2AG407800 Rh2CG393800 Rh2DG427500 Rh4BG022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	56
AccB7I	CCANNNNNTGG	1 cut(s)	15
AccI	GTMKAC	1 cut(s)	48
AclWI	GGATC	1 cut(s)	201
AcoI	YGGCCR	1 cut(s)	282
AfaI	GTAC	1 cut(s)	226
AfiI	CCNNNNNNNGG	1 cut(s)	15
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
Alw26I	GTCTC	1 cut(s)	10
AlwI	GGATC	1 cut(s)	201
AoxI	GGCC	1 cut(s)	282
ApeKI	GCWGC	1 cut(s)	169
AsuHPI	GGTGA	1 cut(s)	170
BalI	TGGCCA	1 cut(s)	284
BauI	CACGAG	1 cut(s)	228
BbvI	GCAGC	1 cut(s)	156
BciT130I	CCWGG	1 cut(s)	36
BclI	TGATCA	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	10
BfaI	CTAG	1 cut(s)	173
BglII	AGATCT	1 cut(s)	11
BisI	GCNGC	1 cut(s)	170
BlsI	GCNGC	1 cut(s)	171
Bme1390I	CCNGG	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	36
BmsI	GCATC	3 cut(s)	64, 86, 253
BpmI	CTGGAG	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	155
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
Bse1I	ACTGG	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	34
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseNI	ACTGG	1 cut(s)	54
BseXI	GCAGC	1 cut(s)	156
BshFI	GGCC	1 cut(s)	284
BslI	CCNNNNNNNGG	1 cut(s)	15
BsmAI	GTCTC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	284
Bso31I	GGTCTC	1 cut(s)	10
Bsp143I	GATC	4 cut(s)	11, 112, 152, 193
BspANI	GGCC	1 cut(s)	284
BspPI	GGATC	1 cut(s)	201
BspTNI	GGTCTC	1 cut(s)	10
BsrI	ACTGG	1 cut(s)	54
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	4 cut(s)	11, 112, 152, 193
BssSI	CACGAG	1 cut(s)	228
Bst2BI	CACGAG	1 cut(s)	228
Bst2UI	CCWGG	1 cut(s)	36
Bst6I	CTCTTC	1 cut(s)	231
BstC8I	GCNNGC	2 cut(s)	21, 103
BstKTI	GATC	4 cut(s)	14, 115, 155, 196
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	4 cut(s)	11, 112, 152, 193
BstNI	CCWGG	1 cut(s)	36
BstNSI	RCATGY	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	34
BstV1I	GCAGC	1 cut(s)	156
BstX2I	RGATCY	1 cut(s)	11
BstYI	RGATCY	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	284
BtsIMutI	CAGTG	1 cut(s)	61
Cac8I	GCNNGC	2 cut(s)	21, 103
Csp6I	GTAC	1 cut(s)	225
CviAII	CATG	3 cut(s)	20, 166, 302
CviJI	RGCY	3 cut(s)	33, 133, 284
CviKI_1	RGCY	3 cut(s)	33, 133, 284
CviQI	GTAC	1 cut(s)	225
DpnI	GATC	4 cut(s)	13, 114, 154, 195
DpnII	GATC	4 cut(s)	11, 112, 152, 193
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
EaeI	YGGCCR	1 cut(s)	282
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Eco31I	GGTCTC	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	34
EcoT22I	ATGCAT	1 cut(s)	79
FaeI	CATG	3 cut(s)	23, 169, 305
FaiI	YATR	6 cut(s)	21, 29, 62, 99, 167, 303
FatI	CATG	3 cut(s)	19, 165, 301
FbaI	TGATCA	1 cut(s)	112
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	1 cut(s)	170
Fsp4HI	GCNGC	1 cut(s)	170
FspBI	CTAG	1 cut(s)	173
GluI	GCNGC	1 cut(s)	170
GsuI	CTGGAG	1 cut(s)	37
HaeIII	GGCC	1 cut(s)	284
Hin1II	CATG	3 cut(s)	23, 169, 305
HincII	GTYRAC	1 cut(s)	299
HindII	GTYRAC	1 cut(s)	299
HinfI	GANTC	4 cut(s)	50, 139, 179, 188
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	2 cut(s)	49, 299
Hpy188I	TCNGA	2 cut(s)	193, 203
Hpy188III	TCNNGA	4 cut(s)	9, 110, 120, 230
Hpy8I	GTNNAC	2 cut(s)	49, 299
HpyCH4V	TGCA	4 cut(s)	23, 77, 128, 266
Hsp92II	CATG	3 cut(s)	23, 169, 305
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	4 cut(s)	11, 112, 152, 193
LpnPI	CCDG	8 cut(s)	21, 22, 48, 67, 133, 141, 156, 199
Lsp1109I	GCAGC	1 cut(s)	156
LweI	GCATC	3 cut(s)	64, 86, 253
MaeI	CTAG	1 cut(s)	173
MaeIII	GTNAC	3 cut(s)	67, 158, 230
MalI	GATC	4 cut(s)	13, 114, 154, 195
MboI	GATC	4 cut(s)	11, 112, 152, 193
MboII	GAAGA	3 cut(s)	77, 216, 248
MflI	RGATCY	1 cut(s)	11
MlsI	TGGCCA	1 cut(s)	284
MluCI	AATT	2 cut(s)	39, 91
MluNI	TGGCCA	1 cut(s)	284
MlyI	GAGTC	3 cut(s)	44, 188, 197
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	1 cut(s)	232
Mox20I	TGGCCA	1 cut(s)	284
Mph1103I	ATGCAT	1 cut(s)	79
MscI	TGGCCA	1 cut(s)	284
Msp20I	TGGCCA	1 cut(s)	284
MspR9I	CCNGG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	36
NdeII	GATC	4 cut(s)	11, 112, 152, 193
NlaIII	CATG	3 cut(s)	23, 169, 305
NmuCI	GTSAC	2 cut(s)	158, 230
NsiI	ATGCAT	1 cut(s)	79
NspI	RCATGY	1 cut(s)	23
PaeI	GCATGC	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	139
PflMI	CCANNNNNTGG	1 cut(s)	15
PkrI	GCNGC	1 cut(s)	171
PleI	GAGTC	3 cut(s)	44, 187, 196
PpsI	GAGTC	3 cut(s)	44, 187, 196
Psp6I	CCWGG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	11
RsaI	GTAC	1 cut(s)	226
RsaNI	GTAC	1 cut(s)	225
SatI	GCNGC	1 cut(s)	170
Sau3AI	GATC	4 cut(s)	11, 112, 152, 193
SchI	GAGTC	3 cut(s)	44, 188, 197
ScrFI	CCNGG	1 cut(s)	36
SetI	ASST	2 cut(s)	135, 160
SfaNI	GCATC	3 cut(s)	64, 86, 253
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	2 cut(s)	39, 91
SspI	AATATT	1 cut(s)	271
SspMI	CTAG	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	34
TasI	AATT	2 cut(s)	39, 91
TatI	WGTACW	1 cut(s)	224
TfiI	GAWTC	1 cut(s)	139
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	2 cut(s)	158, 230
TseI	GCWGC	1 cut(s)	169
Tsp45I	GTSAC	2 cut(s)	158, 230
TspDTI	ATGAA	1 cut(s)	154
TspRI	CASTG	1 cut(s)	61
Van91I	CCANNNNNTGG	1 cut(s)	15
XceI	RCATGY	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	1 cut(s)	173
Zsp2I	ATGCAT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.