RLG00000011284

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0019310
Physical Location & Seq
Reverse (-)
8239463 .. 8240473
1011 bp
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UTR
Exon/CDS
Intron
RLM00000011284

Sequence Viewer

Length: 504 bp
ATGGGTAAGAAGAAACCTCAGAAAACGAAGGAGCTTTCAGTAGCAATAGCAGAAGCTTCATCAACTGGAGATGAAGCTCAGCAGCAACAATCACAGCCTCAGCCTCAGACCCCAAGAAAGCGAGGAAGACCTCGAAAGATCATTGAAGAGCAATCATCAACAAAAATAGAAGAAGCTGCTGCAGCTCAAGATGTTGAAGCAAGTCAGTCCAAAAAAGCTAAAGCCAGTGAGGAAGAGGAAGAAGATAAGCAAGAACAACAAGAAGAGCAGCAGCAAAAGATTAAAGAAGAAGGGCCATCATCGACAAAAGGGTTTAGGATCCAAGGAGCATTGAGAGAGCATAGAAAAGATTGCAATCAGAAGGTGGGGAAAACCGAAGCTGATTATGAGTTGGCTGGCAGAGTCTGGCAGTGGTGGTCTGAGACACTGAGCAATTGTAATGTACGCCCTAGTGCCAAGTCGCTGCATCTGGCACGTGACTATCACGGCCAGTTAATTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

18.9

Weight (kDa)

7.74

Isoelectric Point (pI)

69.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019310)

Species Orthologous Gene IDs
prunus_persica Prupe.1G379600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0301021
rosa_laevigata RLG00000011284
rosa_multiflora Rmu_sc0003168.1_g000008 Rmu_sc0024042.1_g000002
rosa_rugosa Rorug06G0300000
rosa_samantha Rh6CG428500 Rh6DG413900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 313, 326
AcoI YGGCCR 1 cut(s) 487
AcvI CACGTG 1 cut(s) 476
AfaI GTAC 1 cut(s) 444
AgsI TTSAA 2 cut(s) 146, 197
AluBI AGCT 7 cut(s) 34, 56, 77, 176, 185, 218, 380
AluI AGCT 7 cut(s) 34, 56, 77, 176, 185, 218, 380
Alw26I GTCTC 1 cut(s) 416
AlwI GGATC 2 cut(s) 313, 326
AlwNI CAGNNNCTG 1 cut(s) 405
AoxI GGCC 2 cut(s) 293, 487
ApeKI GCWGC 7 cut(s) 82, 176, 179, 182, 268, 271, 463
AspS9I GGNCC 1 cut(s) 293
BamHI GGATCC 1 cut(s) 318
BbrPI CACGTG 1 cut(s) 476
BbsI GAAGAC 1 cut(s) 133
BbvCI CCTCAGC 1 cut(s) 99
BbvI GCAGC 7 cut(s) 94, 163, 166, 194, 280, 283, 450
BccI CCATC 1 cut(s) 304
BceAI ACGGC 1 cut(s) 502
BcoDI GTCTC 1 cut(s) 416
BfaI CTAG 1 cut(s) 450
BfmI CTRYAG 1 cut(s) 180
BisI GCNGC 7 cut(s) 83, 177, 180, 183, 269, 272, 464
BlpI GCTNAGC 1 cut(s) 78
BlsI GCNGC 7 cut(s) 84, 178, 181, 184, 270, 273, 465
BmgT120I GGNCC 1 cut(s) 293
BmiI GGNNCC 1 cut(s) 320
BmsI GCATC 1 cut(s) 475
BpiI GAAGAC 1 cut(s) 133
BpmI CTGGAG 1 cut(s) 87
Bpu10I CCTNAGC 1 cut(s) 99
Bpu1102I GCTNAGC 1 cut(s) 78
BpuEI CTTGAG 1 cut(s) 171
BsaAI YACGTR 1 cut(s) 476
BsaBI GATNNNNATC 1 cut(s) 354
BsaJI CCNNGG 1 cut(s) 322
Bse1I ACTGG 3 cut(s) 70, 225, 490
Bse8I GATNNNNATC 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 322
BseJI GATNNNNATC 1 cut(s) 354
BseMII CTCAG 6 cut(s) 32, 92, 113, 119, 411, 419
BseNI ACTGG 3 cut(s) 70, 225, 490
BseXI GCAGC 7 cut(s) 94, 163, 166, 194, 280, 283, 450
BshFI GGCC 2 cut(s) 295, 489
BsmAI GTCTC 1 cut(s) 416
BsnI GGCC 2 cut(s) 295, 489
Bsp143I GATC 2 cut(s) 138, 318
Bsp1720I GCTNAGC 1 cut(s) 78
BspANI GGCC 2 cut(s) 295, 489
BspCNI CTCAG 6 cut(s) 31, 91, 112, 118, 412, 420
BspLI GGNNCC 1 cut(s) 320
BspMAI CTGCAG 1 cut(s) 184
BspPI GGATC 2 cut(s) 313, 326
BspQI GCTCTTC 2 cut(s) 141, 258
BsrI ACTGG 3 cut(s) 70, 225, 490
BssECI CCNNGG 1 cut(s) 322
BssMI GATC 2 cut(s) 138, 318
BssT1I CCWWGG 1 cut(s) 322
Bst6I CTCTTC 3 cut(s) 141, 228, 258
BstBAI YACGTR 1 cut(s) 476
BstC8I GCNNGC 1 cut(s) 397
BstDEI CTNAG 6 cut(s) 18, 78, 99, 105, 420, 428
BstKTI GATC 2 cut(s) 141, 321
BstMAI GTCTC 1 cut(s) 416
BstMBI GATC 2 cut(s) 138, 318
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 7 cut(s) 94, 163, 166, 194, 280, 283, 450
BstV2I GAAGAC 1 cut(s) 133
BstX2I RGATCY 1 cut(s) 318
BstYI RGATCY 1 cut(s) 318
BsuRI GGCC 2 cut(s) 295, 489
BtsI GCAGTG 1 cut(s) 416
BtsIMutI CAGTG 3 cut(s) 232, 416, 425
Cac8I GCNNGC 1 cut(s) 397
CaiI CAGNNNCTG 1 cut(s) 405
Cfr13I GGNCC 1 cut(s) 293
Csp6I GTAC 1 cut(s) 443
CviQI GTAC 1 cut(s) 443
DdeI CTNAG 6 cut(s) 18, 78, 99, 105, 420, 428
DpnI GATC 2 cut(s) 140, 320
DpnII GATC 2 cut(s) 138, 318
EaeI YGGCCR 1 cut(s) 487
Eam1104I CTCTTC 3 cut(s) 141, 228, 258
EarI CTCTTC 3 cut(s) 141, 228, 258
Eco130I CCWWGG 1 cut(s) 322
Eco72I CACGTG 1 cut(s) 476
EcoT14I CCWWGG 1 cut(s) 322
ErhI CCWWGG 1 cut(s) 322
FaiI YATR 3 cut(s) 342, 387, 502
Fnu4HI GCNGC 7 cut(s) 83, 177, 180, 183, 269, 272, 464
Fsp4HI GCNGC 7 cut(s) 83, 177, 180, 183, 269, 272, 464
FspBI CTAG 1 cut(s) 450
GluI GCNGC 7 cut(s) 83, 177, 180, 183, 269, 272, 464
GsuI CTGGAG 1 cut(s) 87
HaeIII GGCC 2 cut(s) 295, 489
HindIII AAGCTT 1 cut(s) 54
HinfI GANTC 1 cut(s) 402
Hpy188I TCNGA 4 cut(s) 21, 108, 360, 421
Hpy188III TCNNGA 1 cut(s) 188
HpyAV CCTTC 3 cut(s) 22, 284, 355
HpyCH4IV ACGT 1 cut(s) 475
HpyCH4V TGCA 3 cut(s) 182, 354, 466
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 6 cut(s) 18, 78, 99, 105, 420, 428
HpySE526I ACGT 1 cut(s) 475
Kzo9I GATC 2 cut(s) 138, 318
LguI GCTCTTC 2 cut(s) 141, 258
LmnI GCTCC 2 cut(s) 31, 326
LpnPI CCDG 5 cut(s) 51, 238, 381, 391, 455
Lsp1109I GCAGC 7 cut(s) 94, 163, 166, 194, 280, 283, 450
LweI GCATC 1 cut(s) 475
MaeI CTAG 1 cut(s) 450
MaeII ACGT 1 cut(s) 475
MaeIII GTNAC 1 cut(s) 476
MalI GATC 2 cut(s) 140, 320
MboI GATC 2 cut(s) 138, 318
MboII GAAGA 9 cut(s) 22, 138, 158, 182, 245, 251, 254, 275, 299
MfeI CAATTG 1 cut(s) 433
MflI RGATCY 1 cut(s) 318
MluCI AATT 2 cut(s) 433, 495
MlyI GAGTC 1 cut(s) 411
MnlI CCTC 7 cut(s) 27, 108, 114, 116, 141, 223, 229
MseI TTAA 2 cut(s) 282, 494
MunI CAATTG 1 cut(s) 433
MwoI GCNNNNNNNGC 1 cut(s) 182
NdeII GATC 2 cut(s) 138, 318
NlaIV GGNNCC 1 cut(s) 320
NmuCI GTSAC 1 cut(s) 476
PciSI GCTCTTC 2 cut(s) 141, 258
PkrI GCNGC 7 cut(s) 84, 178, 181, 184, 270, 273, 465
PleI GAGTC 1 cut(s) 410
PmaCI CACGTG 1 cut(s) 476
PmlI CACGTG 1 cut(s) 476
PpsI GAGTC 1 cut(s) 410
Ppu21I YACGTR 1 cut(s) 476
PspCI CACGTG 1 cut(s) 476
PspN4I GGNNCC 1 cut(s) 320
PspPI GGNCC 1 cut(s) 293
PstI CTGCAG 1 cut(s) 184
PstNI CAGNNNCTG 1 cut(s) 405
PsuI RGATCY 1 cut(s) 318
RsaI GTAC 1 cut(s) 444
RsaNI GTAC 1 cut(s) 443
SapI GCTCTTC 2 cut(s) 141, 258
SaqAI TTAA 2 cut(s) 282, 494
SatI GCNGC 7 cut(s) 83, 177, 180, 183, 269, 272, 464
Sau3AI GATC 2 cut(s) 138, 318
Sau96I GGNCC 1 cut(s) 293
SchI GAGTC 1 cut(s) 411
SfaNI GCATC 1 cut(s) 475
SfcI CTRYAG 1 cut(s) 180
SmlI CTYRAG 1 cut(s) 186
SmoI CTYRAG 1 cut(s) 186
Sse9I AATT 2 cut(s) 433, 495
SspMI CTAG 1 cut(s) 450
StyI CCWWGG 1 cut(s) 322
TaiI ACGT 1 cut(s) 478
TaqI TCGA 2 cut(s) 133, 302
TasI AATT 2 cut(s) 433, 495
Tru1I TTAA 2 cut(s) 282, 494
Tru9I TTAA 2 cut(s) 282, 494
TscAI CASTG 3 cut(s) 232, 416, 432
TseFI GTSAC 1 cut(s) 476
TseI GCWGC 7 cut(s) 82, 176, 179, 182, 268, 271, 463
Tsp45I GTSAC 1 cut(s) 476
TspDTI ATGAA 2 cut(s) 48, 87
TspRI CASTG 3 cut(s) 232, 416, 432
XspI CTAG 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.