Rmu_sc0003168.1_g000008

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003168.1
Physical Location & Seq
Forward (+)
42184 .. 42576
393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003168.1_g000008.1.cds

Sequence Viewer

Length: 393 bp
atgggtaagaagaaacctcagaaaacgaaggagctttcagtagcaatagcagaagcttcatcaactggagatgaagctcagcagcaacaatcacagcctcagcctcagaccccaagaaagcgaggaagacctcgaaagatcattgaagagcaatcatcaacaaaaatagaagaagctgctgcagctcaagatgttgaagccagtcagtccaaaaaagctaaagccagcagtgaggaagaggaagaagataagcaagaacaacaagaagagcagcagcaaaagattaaagaagaagggccctcatcgacaaaagctaaagagagtgagtcaaggagggagccttcgagaagtagagctaggaggaaaagcaaacccagaaagagtagttgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.61

Weight (kDa)

9.46

Isoelectric Point (pI)

111.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019310)

Species Orthologous Gene IDs
prunus_persica Prupe.1G379600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0301021
rosa_laevigata RLG00000011284
rosa_multiflora Rmu_sc0003168.1_g000008 Rmu_sc0024042.1_g000002
rosa_rugosa Rorug06G0300000
rosa_samantha Rh6CG428500 Rh6DG413900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 146, 197
AluBI AGCT 8 cut(s) 34, 56, 77, 176, 185, 218, 314, 356
AluI AGCT 8 cut(s) 34, 56, 77, 176, 185, 218, 314, 356
AoxI GGCC 1 cut(s) 296
ApaI GGGCCC 1 cut(s) 300
ApeKI GCWGC 6 cut(s) 82, 176, 179, 182, 271, 274
AspS9I GGNCC 2 cut(s) 296, 297
BaeGI GKGCMC 1 cut(s) 300
BanII GRGCYC 1 cut(s) 300
BbsI GAAGAC 1 cut(s) 133
BbvCI CCTCAGC 1 cut(s) 99
BbvI GCAGC 6 cut(s) 94, 163, 166, 194, 283, 286
BfaI CTAG 1 cut(s) 357
BfmI CTRYAG 1 cut(s) 180
BisI GCNGC 6 cut(s) 83, 177, 180, 183, 272, 275
BlpI GCTNAGC 1 cut(s) 78
BlsI GCNGC 6 cut(s) 84, 178, 181, 184, 273, 276
BmgT120I GGNCC 2 cut(s) 296, 297
BmiI GGNNCC 2 cut(s) 298, 339
BpiI GAAGAC 1 cut(s) 133
BpmI CTGGAG 1 cut(s) 87
Bpu10I CCTNAGC 1 cut(s) 99
Bpu1102I GCTNAGC 1 cut(s) 78
BpuEI CTTGAG 1 cut(s) 171
Bse1I ACTGG 2 cut(s) 70, 201
BseMII CTCAG 4 cut(s) 32, 92, 113, 119
BseNI ACTGG 2 cut(s) 70, 201
BseSI GKGCMC 1 cut(s) 300
BseXI GCAGC 6 cut(s) 94, 163, 166, 194, 283, 286
BshFI GGCC 1 cut(s) 298
BsnI GGCC 1 cut(s) 298
Bsp120I GGGCCC 1 cut(s) 296
Bsp1286I GDGCHC 1 cut(s) 300
Bsp143I GATC 1 cut(s) 138
Bsp1720I GCTNAGC 1 cut(s) 78
BspANI GGCC 1 cut(s) 298
BspCNI CTCAG 4 cut(s) 31, 91, 112, 118
BspLI GGNNCC 2 cut(s) 298, 339
BspMAI CTGCAG 1 cut(s) 184
BspQI GCTCTTC 2 cut(s) 141, 261
BsrI ACTGG 2 cut(s) 70, 201
BssMI GATC 1 cut(s) 138
Bst6I CTCTTC 3 cut(s) 141, 231, 261
BstC8I GCNNGC 1 cut(s) 226
BstDEI CTNAG 4 cut(s) 18, 78, 99, 105
BstKTI GATC 1 cut(s) 141
BstMBI GATC 1 cut(s) 138
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstSFI CTRYAG 1 cut(s) 180
BstSLI GKGCMC 1 cut(s) 300
BstV1I GCAGC 6 cut(s) 94, 163, 166, 194, 283, 286
BstV2I GAAGAC 1 cut(s) 133
BsuRI GGCC 1 cut(s) 298
BtsI GCAGTG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 235
Cac8I GCNNGC 1 cut(s) 226
Cfr13I GGNCC 2 cut(s) 296, 297
DdeI CTNAG 4 cut(s) 18, 78, 99, 105
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
Eam1104I CTCTTC 3 cut(s) 141, 231, 261
EarI CTCTTC 3 cut(s) 141, 231, 261
Eco24I GRGCYC 1 cut(s) 300
EcoO109I RGGNCCY 2 cut(s) 296, 297
EcoT38I GRGCYC 1 cut(s) 300
Fnu4HI GCNGC 6 cut(s) 83, 177, 180, 183, 272, 275
FriOI GRGCYC 1 cut(s) 300
Fsp4HI GCNGC 6 cut(s) 83, 177, 180, 183, 272, 275
FspBI CTAG 1 cut(s) 357
GluI GCNGC 6 cut(s) 83, 177, 180, 183, 272, 275
GsuI CTGGAG 1 cut(s) 87
HaeIII GGCC 1 cut(s) 298
HindIII AAGCTT 1 cut(s) 54
HinfI GANTC 1 cut(s) 326
Hpy188I TCNGA 2 cut(s) 21, 108
Hpy188III TCNNGA 2 cut(s) 188, 345
HpyAV CCTTC 3 cut(s) 22, 287, 351
HpyCH4V TGCA 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 4 cut(s) 18, 78, 99, 105
Kzo9I GATC 1 cut(s) 138
LguI GCTCTTC 2 cut(s) 141, 261
LmnI GCTCC 2 cut(s) 31, 337
LpnPI CCDG 4 cut(s) 51, 214, 238, 388
Lsp1109I GCAGC 6 cut(s) 94, 163, 166, 194, 283, 286
MaeI CTAG 1 cut(s) 357
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MboII GAAGA 9 cut(s) 22, 138, 158, 182, 248, 254, 257, 278, 302
MhlI GDGCHC 1 cut(s) 300
MlyI GAGTC 1 cut(s) 335
MseI TTAA 1 cut(s) 285
MwoI GCNNNNNNNGC 1 cut(s) 182
NdeII GATC 1 cut(s) 138
NlaIV GGNNCC 2 cut(s) 298, 339
PciSI GCTCTTC 2 cut(s) 141, 261
PkrI GCNGC 6 cut(s) 84, 178, 181, 184, 273, 276
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
PspN4I GGNNCC 2 cut(s) 298, 339
PspOMI GGGCCC 1 cut(s) 296
PspPI GGNCC 2 cut(s) 296, 297
PstI CTGCAG 1 cut(s) 184
SapI GCTCTTC 2 cut(s) 141, 261
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 6 cut(s) 83, 177, 180, 183, 272, 275
Sau3AI GATC 1 cut(s) 138
Sau96I GGNCC 2 cut(s) 296, 297
SchI GAGTC 1 cut(s) 335
SduI GDGCHC 1 cut(s) 300
SfcI CTRYAG 1 cut(s) 180
SmlI CTYRAG 1 cut(s) 186
SmoI CTYRAG 1 cut(s) 186
SspMI CTAG 1 cut(s) 357
TaqI TCGA 3 cut(s) 133, 305, 344
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 1 cut(s) 235
TseI GCWGC 6 cut(s) 82, 176, 179, 182, 271, 274
TspDTI ATGAA 2 cut(s) 48, 87
TspRI CASTG 1 cut(s) 235
XspI CTAG 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.