Rh6CG428500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
60998540 .. 60999463
924 bp
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UTR
Exon/CDS
Intron
Rh6CG428500.1

Sequence Viewer

Length: 390 bp
ATGGGTAAGAAGAAACCTCAGAAAACGAAGGAGCTTTCAGTAGCAATAGCAGAAGCTTCATCAACTGGAGATGAAGCTCAGCAGCAACAATCACAGCCTCAGCCTCAGACCCCAAGAAAGCGAGGAAGACCTCGAAAGATCATTGAAGAGCAATCATCAACAAAAATAGAAGAAGCTGCTGCAGCTCAAGATGTTGAAGCCAGTCAGTCCAAAAAAGCTAAAGCCAGTGAGGAAGAGGAAGAAGATAAGCAAGAACAACAAGAAGAGCAGCAGCAAAAGATTAAAGAAGAAGGGCCATCATCGACAAAAGCTAAAGAGAGTGAGTCAAGGAGGGAGCCTTCGAGAAGTAGAGCTAGGAGGAAAAGCAAACCCAGAAAGAGTAGTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.52

Weight (kDa)

9.46

Isoelectric Point (pI)

110.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019310)

Species Orthologous Gene IDs
prunus_persica Prupe.1G379600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0301021
rosa_laevigata RLG00000011284
rosa_multiflora Rmu_sc0003168.1_g000008 Rmu_sc0024042.1_g000002
rosa_rugosa Rorug06G0300000
rosa_samantha Rh6CG428500 Rh6DG413900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 146, 197
AluBI AGCT 8 cut(s) 34, 56, 77, 176, 185, 218, 311, 353
AluI AGCT 8 cut(s) 34, 56, 77, 176, 185, 218, 311, 353
AoxI GGCC 1 cut(s) 293
ApeKI GCWGC 6 cut(s) 82, 176, 179, 182, 268, 271
AspS9I GGNCC 1 cut(s) 293
BbsI GAAGAC 1 cut(s) 133
BbvCI CCTCAGC 1 cut(s) 99
BbvI GCAGC 6 cut(s) 94, 163, 166, 194, 280, 283
BccI CCATC 1 cut(s) 304
BfaI CTAG 1 cut(s) 354
BfmI CTRYAG 1 cut(s) 180
BisI GCNGC 6 cut(s) 83, 177, 180, 183, 269, 272
BlpI GCTNAGC 1 cut(s) 78
BlsI GCNGC 6 cut(s) 84, 178, 181, 184, 270, 273
BmgT120I GGNCC 1 cut(s) 293
BmiI GGNNCC 1 cut(s) 336
BpiI GAAGAC 1 cut(s) 133
BpmI CTGGAG 1 cut(s) 87
Bpu10I CCTNAGC 1 cut(s) 99
Bpu1102I GCTNAGC 1 cut(s) 78
BpuEI CTTGAG 1 cut(s) 171
Bse1I ACTGG 3 cut(s) 70, 201, 225
BseMII CTCAG 4 cut(s) 32, 92, 113, 119
BseNI ACTGG 3 cut(s) 70, 201, 225
BseXI GCAGC 6 cut(s) 94, 163, 166, 194, 280, 283
BshFI GGCC 1 cut(s) 295
BsnI GGCC 1 cut(s) 295
Bsp143I GATC 1 cut(s) 138
Bsp1720I GCTNAGC 1 cut(s) 78
BspANI GGCC 1 cut(s) 295
BspCNI CTCAG 4 cut(s) 31, 91, 112, 118
BspLI GGNNCC 1 cut(s) 336
BspMAI CTGCAG 1 cut(s) 184
BspQI GCTCTTC 2 cut(s) 141, 258
BsrI ACTGG 3 cut(s) 70, 201, 225
BssMI GATC 1 cut(s) 138
Bst6I CTCTTC 3 cut(s) 141, 228, 258
BstDEI CTNAG 4 cut(s) 18, 78, 99, 105
BstKTI GATC 1 cut(s) 141
BstMBI GATC 1 cut(s) 138
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 6 cut(s) 94, 163, 166, 194, 280, 283
BstV2I GAAGAC 1 cut(s) 133
BsuRI GGCC 1 cut(s) 295
BtsIMutI CAGTG 1 cut(s) 232
Cfr13I GGNCC 1 cut(s) 293
DdeI CTNAG 4 cut(s) 18, 78, 99, 105
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
Eam1104I CTCTTC 3 cut(s) 141, 228, 258
EarI CTCTTC 3 cut(s) 141, 228, 258
Fnu4HI GCNGC 6 cut(s) 83, 177, 180, 183, 269, 272
Fsp4HI GCNGC 6 cut(s) 83, 177, 180, 183, 269, 272
FspBI CTAG 1 cut(s) 354
GluI GCNGC 6 cut(s) 83, 177, 180, 183, 269, 272
GsuI CTGGAG 1 cut(s) 87
HaeIII GGCC 1 cut(s) 295
HindIII AAGCTT 1 cut(s) 54
HinfI GANTC 1 cut(s) 323
Hpy188I TCNGA 2 cut(s) 21, 108
Hpy188III TCNNGA 2 cut(s) 188, 342
HpyAV CCTTC 3 cut(s) 22, 284, 348
HpyCH4V TGCA 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 4 cut(s) 18, 78, 99, 105
Kzo9I GATC 1 cut(s) 138
LguI GCTCTTC 2 cut(s) 141, 258
LmnI GCTCC 2 cut(s) 31, 334
LpnPI CCDG 4 cut(s) 51, 214, 238, 385
Lsp1109I GCAGC 6 cut(s) 94, 163, 166, 194, 280, 283
MaeI CTAG 1 cut(s) 354
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MboII GAAGA 9 cut(s) 22, 138, 158, 182, 245, 251, 254, 275, 299
MlyI GAGTC 1 cut(s) 332
MnlI CCTC 9 cut(s) 27, 108, 114, 116, 141, 223, 229, 324, 351
MseI TTAA 1 cut(s) 282
MwoI GCNNNNNNNGC 1 cut(s) 182
NdeII GATC 1 cut(s) 138
NlaIV GGNNCC 1 cut(s) 336
PciSI GCTCTTC 2 cut(s) 141, 258
PkrI GCNGC 6 cut(s) 84, 178, 181, 184, 270, 273
PleI GAGTC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 336
PspPI GGNCC 1 cut(s) 293
PstI CTGCAG 1 cut(s) 184
SapI GCTCTTC 2 cut(s) 141, 258
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 6 cut(s) 83, 177, 180, 183, 269, 272
Sau3AI GATC 1 cut(s) 138
Sau96I GGNCC 1 cut(s) 293
SchI GAGTC 1 cut(s) 332
SfcI CTRYAG 1 cut(s) 180
SmlI CTYRAG 1 cut(s) 186
SmoI CTYRAG 1 cut(s) 186
SspMI CTAG 1 cut(s) 354
TaqI TCGA 3 cut(s) 133, 302, 341
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TscAI CASTG 1 cut(s) 232
TseI GCWGC 6 cut(s) 82, 176, 179, 182, 268, 271
TspDTI ATGAA 2 cut(s) 48, 87
TspRI CASTG 1 cut(s) 232
XspI CTAG 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.