RLG00000011950

May be involved in modulation of pathogen defense and leaf cell death

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0013845
Physical Location & Seq
Forward (+)
14001830 .. 14003344
1515 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011950

Sequence Viewer

Length: 1515 bp
ATGAGTGGTGGTGAGGAAGAGAAAACGCTAGAGTACACGCCCACATGGGTTGTTGCGGCTGTCTGCACCGTCATCGTGGCCATTTCTCTGGCTCTGGAGCGTCTGCTCCACTACGGCGGCAAGTTCTTGAAGAAGAAGGGCCAGAAGCCTCTGTATGAAGCGTTGCAGAAAGTGAAGGAAGAGCTTATGCTGTTGGGCTTTATCTCGCTGCTGCTCACCGTTTTCCAGAATGTAATCGCCAAAATCTGCGTGGAGCACGGAGTCATGGAGCATCTTCTTCCCTGTAAACTCCAAGACATGGCAGCGGAAGCGGAAAACACCACTTCCCATTTTGCCCATTTCCGGCGTCTGGCGGAGGAAACCACCGCGGCCCAAAGTGGGTATTGCGAGGCAAAGGGTAAGGTACCGTTGCTATCTACAGAGGCACTGCATCATCTTCATATCTTCATCTTTGTTCTGGCCATTGTTCATGTGGTGTTTTGTGTTTTGACTGTGGTCTTCGGAGGGATGAAGATCCGGCAGTGGAGAGCGTGGGAGGATGCGATTGCGGCACAGAATTATGACTCCCAACAATTTATTAATAAAAAGCATAAGGTTACTCATGTTCAGGACCATGCTTTTATCAAAGAACGGTTTCTGGGAATGGGTAAAATTTCAGCCTTGTTGGGCTGGATTCATTCTTTTTTCAAGCAATTTTATGCATCTGTTACAAGATCGGATTATGTGACGTTGCGGCTGGGTTTTATTAACACCCACTGTAAGGCGAATCCCAAGTTTAATTTTCACAAGTACATGATCCGAGCTCTGGAAGATGATTTCAGAAAAGTGGTGGGTATTAGTTGGTATCTTTGGGTGTTTGTGGTGGTTTTCTTGCTGCTGAATGTGAATGGTTGGCATACCTATTTCTGGATTGCCTTCCTACCTTTCTTTCTTTTAATTGCTGTGGGGACTAAGCTTGAGCATGTGATTACCCAAATGGCTCATGAGGTTGCTGAGAAACACAGCGCCATAGAGGGGGATCTAGTAGTTACACCATCCGATGGCCACTTTTGGTTTGGAAAGCCTAAGCTTGTGCTCTTCTTGATTCATTTCATCCTTTTCCAAAACGCTTTCGAGATTGCGTTTTTCTTCTGGATTTGGGTTCAGTATGGTTTCGATTCCTGCATCATGGGGCAAGTGCGCTACATTGTCCCCAGGCTTGTGATTGGGGTGTTCATTCAGGGGCTGTGTAGTTATAGTACTCTGCCACTCTATGCCATTATCACACAGATGGGAACCTCCTTCAAGAAAGCTATATTCGATGACCATGTGCAAGTAGGCCTTGTTGGTTGGGCTCAAAAGGTTAAGAAAAAGAAGGCCGCTGCTGCTGACGCCTCCAGCTCTGGTTCTGTCCAAGCAAGTTCCCATGGTGGTATTGGCTCTGCTTTCGGAATTCAGATGGGGAAACTTGCTAAGAAGGCAACTAAGCCGGAGGAGAATAATTCAGACCAGAAGAAGGACGAGGAGAATAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0016020 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mlo

Protein Analysis

505

Amino Acids

57.04

Weight (kDa)

8.94

Isoelectric Point (pI)

26.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 7 - 467 7e-191 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013845)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02600 AT4G02600
fragaria_vesca FvH4_2g25260
malus_domestica MD03G1282200.v1.1
prunus_persica Prupe.8G257400_v2.0.a1
pyrus_communis pycom03g22300
rosa_chinensis RchiOBHm_Chr6g0293391
rosa_laevigata RLG00000011950
rosa_multiflora Rmu_co8483215.1_g000001 Rmu_sc0006269.1_g000024
rosa_roxburghii Rroxscaffold_7G00174190
rosa_rugosa Rorug06G0235200
rosa_samantha Rh6AG348100 Rh6BG355700 Rh6CG361800 Rh6DG348900
rosa_wichuraiana Rw6G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 403
AccB1I GGYRCC 1 cut(s) 403
AccB7I CCANNNNNTGG 2 cut(s) 298, 1040
AccII CGCG 1 cut(s) 368
AclWI GGATC 3 cut(s) 508, 790, 1026
AcoI YGGCCR 3 cut(s) 78, 459, 1042
AcsI RAATTY 2 cut(s) 651, 1431
AcyI GRCGYC 2 cut(s) 346, 1371
AfaI GTAC 4 cut(s) 35, 405, 791, 1240
AgsI TTSAA 3 cut(s) 130, 688, 1285
AjnI CCWGG 1 cut(s) 1193
AluBI AGCT 6 cut(s) 184, 803, 955, 1069, 1292, 1380
AluI AGCT 6 cut(s) 184, 803, 955, 1069, 1292, 1380
Alw21I GWGCWC 3 cut(s) 258, 805, 1077
AlwI GGATC 3 cut(s) 508, 790, 1026
AlwNI CAGNNNCTG 1 cut(s) 1225
AoxI GGCC 7 cut(s) 78, 139, 369, 459, 1042, 1318, 1356
ApeKI GCWGC 6 cut(s) 208, 211, 302, 874, 1361, 1364
ApoI RAATTY 2 cut(s) 651, 1431
AseI ATTAAT 1 cut(s) 579
Asp700I GAANNNNTTC 1 cut(s) 633
Asp718I GGTACC 1 cut(s) 403
AspLEI GCGC 2 cut(s) 1007, 1182
AspS9I GGNCC 3 cut(s) 139, 370, 610
AsuHPI GGTGA 2 cut(s) 23, 208
AvaII GGWCC 1 cut(s) 610
BalI TGGCCA 3 cut(s) 80, 461, 1044
BanI GGYRCC 1 cut(s) 403
BanII GRGCYC 2 cut(s) 805, 1336
BbsI GAAGAC 1 cut(s) 490
Bbv12I GWGCWC 3 cut(s) 258, 805, 1077
BbvI GCAGC 6 cut(s) 195, 198, 314, 861, 1348, 1351
BccI CCATC 4 cut(s) 1034, 1042, 1264, 1432
BceAI ACGGC 1 cut(s) 130
BcgI CGANNNNNNTGC 2 cut(s) 55, 89
BciT130I CCWGG 1 cut(s) 1195
BfaI CTAG 2 cut(s) 29, 1022
BfmI CTRYAG 1 cut(s) 417
BfoI RGCGCY 1 cut(s) 1008
BmcAI AGTACT 1 cut(s) 1240
Bme1390I CCNGG 1 cut(s) 1195
Bme18I GGWCC 1 cut(s) 610
BmgT120I GGNCC 3 cut(s) 139, 370, 610
BmiI GGNNCC 2 cut(s) 405, 1276
BmrFI CCNGG 1 cut(s) 1195
BmsI GCATC 5 cut(s) 280, 439, 529, 710, 1173
BoxI GACNNNNGTC 1 cut(s) 494
BpiI GAAGAC 1 cut(s) 490
BpmI CTGGAG 2 cut(s) 116, 1360
Bpu10I CCTNAGC 1 cut(s) 1065
BpuEI CTTGAG 1 cut(s) 977
BsaBI GATNNNNATC 1 cut(s) 512
BsaHI GRCGYC 2 cut(s) 346, 1371
BsaJI CCNNGG 3 cut(s) 366, 1193, 1405
Bse8I GATNNNNATC 1 cut(s) 512
BseBI CCWGG 1 cut(s) 1195
BseDI CCNNGG 3 cut(s) 366, 1193, 1405
BseGI GGATG 4 cut(s) 513, 544, 1034, 1092
BseJI GATNNNNATC 1 cut(s) 512
BseMII CTCAG 1 cut(s) 984
BseRI GAGGAG 1 cut(s) 1487
BseXI GCAGC 6 cut(s) 195, 198, 314, 861, 1348, 1351
BseYI CCCAGC 1 cut(s) 736
BsgI GTGCAG 1 cut(s) 49
Bsh1236I CGCG 1 cut(s) 368
BshFI GGCC 7 cut(s) 80, 141, 371, 461, 1044, 1320, 1358
BshNI GGYRCC 1 cut(s) 403
BsiHKAI GWGCWC 3 cut(s) 258, 805, 1077
BsiSI CCGG 3 cut(s) 343, 517, 1469
BslFI GGGAC 2 cut(s) 961, 1175
BsmFI GGGAC 2 cut(s) 961, 1175
BsnI GGCC 7 cut(s) 80, 141, 371, 461, 1044, 1320, 1358
Bsp1286I GDGCHC 4 cut(s) 258, 805, 1077, 1336
Bsp143I GATC 4 cut(s) 513, 713, 795, 1018
Bsp19I CCATGG 1 cut(s) 1405
BspANI GGCC 7 cut(s) 80, 141, 371, 461, 1044, 1320, 1358
BspCNI CTCAG 1 cut(s) 985
BspFNI CGCG 1 cut(s) 368
BspHI TCATGA 1 cut(s) 982
BspLI GGNNCC 2 cut(s) 405, 1276
BspPI GGATC 3 cut(s) 508, 790, 1026
BspQI GCTCTTC 2 cut(s) 174, 1082
BspT107I GGYRCC 1 cut(s) 403
BssECI CCNNGG 3 cut(s) 366, 1193, 1405
BssMI GATC 4 cut(s) 513, 713, 795, 1018
BssNI GRCGYC 2 cut(s) 346, 1371
BssT1I CCWWGG 1 cut(s) 1405
Bst2UI CCWGG 1 cut(s) 1195
Bst4CI ACNGT 6 cut(s) 70, 220, 408, 493, 633, 758
Bst6I CTCTTC 3 cut(s) 12, 174, 1082
BstACI GRCGYC 2 cut(s) 346, 1371
BstDEI CTNAG 5 cut(s) 951, 993, 1065, 1452, 1464
BstDSI CCRYGG 2 cut(s) 366, 1405
BstF5I GGATG 4 cut(s) 513, 544, 1034, 1092
BstFNI CGCG 1 cut(s) 368
BstH2I RGCGCY 1 cut(s) 1008
BstHHI GCGC 2 cut(s) 1007, 1182
BstKTI GATC 4 cut(s) 516, 716, 798, 1021
BstMBI GATC 4 cut(s) 513, 713, 795, 1018
BstMWI GCNNNNNNNGC 5 cut(s) 308, 548, 1364, 1370, 1457
BstNI CCWGG 1 cut(s) 1195
BstNSI RCATGY 1 cut(s) 965
BstPAI GACNNNNGTC 1 cut(s) 494
BstSCI CCNGG 1 cut(s) 1193
BstSFI CTRYAG 1 cut(s) 417
BstUI CGCG 1 cut(s) 368
BstV1I GCAGC 6 cut(s) 195, 198, 314, 861, 1348, 1351
BstV2I GAAGAC 1 cut(s) 490
BstX2I RGATCY 2 cut(s) 513, 1018
BstXI CCANNNNNNTGG 1 cut(s) 88
BstYI RGATCY 2 cut(s) 513, 1018
BsuRI GGCC 7 cut(s) 80, 141, 371, 461, 1044, 1320, 1358
BtgI CCRYGG 2 cut(s) 366, 1405
BtsCI GGATG 4 cut(s) 513, 544, 1034, 1092
BtsI GCAGTG 2 cut(s) 425, 527
BtsIMutI CAGTG 3 cut(s) 425, 527, 754
CaiI CAGNNNCTG 1 cut(s) 1225
CciI TCATGA 1 cut(s) 982
CfoI GCGC 2 cut(s) 1007, 1182
Cfr13I GGNCC 3 cut(s) 139, 370, 610
Cfr42I CCGCGG 1 cut(s) 369
CseI GACGC 3 cut(s) 89, 335, 1379
Csp6I GTAC 4 cut(s) 34, 404, 790, 1239
CspCI CAANNNNNGTGG 2 cut(s) 31, 66
CviQI GTAC 4 cut(s) 34, 404, 790, 1239
DdeI CTNAG 5 cut(s) 951, 993, 1065, 1452, 1464
DpnI GATC 4 cut(s) 515, 715, 797, 1020
DpnII GATC 4 cut(s) 513, 713, 795, 1018
EaeI YGGCCR 3 cut(s) 78, 459, 1042
Eam1104I CTCTTC 3 cut(s) 12, 174, 1082
EarI CTCTTC 3 cut(s) 12, 174, 1082
EciI GGCGGA 1 cut(s) 368
Ecl136II GAGCTC 1 cut(s) 803
Eco130I CCWWGG 1 cut(s) 1405
Eco147I AGGCCT 1 cut(s) 1320
Eco24I GRGCYC 2 cut(s) 805, 1336
Eco47I GGWCC 1 cut(s) 610
Eco53kI GAGCTC 1 cut(s) 803
EcoICRI GAGCTC 1 cut(s) 803
EcoRI GAATTC 1 cut(s) 1431
EcoRII CCWGG 1 cut(s) 1193
EcoT14I CCWWGG 1 cut(s) 1405
EcoT22I ATGCAT 1 cut(s) 703
EcoT38I GRGCYC 2 cut(s) 805, 1336
ErhI CCWWGG 1 cut(s) 1405
FalI AAGNNNNNCTT 2 cut(s) 1305, 1337
FaqI GGGAC 2 cut(s) 961, 1175
FokI GGATG 4 cut(s) 520, 551, 1021, 1079
FriOI GRGCYC 2 cut(s) 805, 1336
FspBI CTAG 2 cut(s) 29, 1022
GlaI GCGC 2 cut(s) 1006, 1181
GsaI CCCAGC 1 cut(s) 740
GsuI CTGGAG 2 cut(s) 116, 1360
HaeII RGCGCY 1 cut(s) 1008
HaeIII GGCC 7 cut(s) 80, 141, 371, 461, 1044, 1320, 1358
HapII CCGG 3 cut(s) 343, 517, 1469
HgaI GACGC 3 cut(s) 89, 335, 1379
HhaI GCGC 2 cut(s) 1007, 1182
Hin1I GRCGYC 2 cut(s) 346, 1371
Hin6I GCGC 2 cut(s) 1005, 1180
HinP1I GCGC 2 cut(s) 1005, 1180
HindIII AAGCTT 2 cut(s) 953, 1067
HinfI GANTC 6 cut(s) 261, 563, 673, 766, 1084, 1157
HpaII CCGG 3 cut(s) 343, 517, 1469
HphI GGTGA 2 cut(s) 23, 208
Hpy166II GTNNAC 2 cut(s) 36, 287
Hpy188I TCNGA 8 cut(s) 503, 718, 800, 821, 1039, 1430, 1437, 1486
Hpy8I GTNNAC 2 cut(s) 36, 287
HpyAV CCTTC 7 cut(s) 130, 169, 925, 1291, 1348, 1450, 1489
HpyCH4III ACNGT 6 cut(s) 70, 220, 408, 493, 633, 758
HpyCH4IV ACGT 1 cut(s) 728
HpyCH4V TGCA 6 cut(s) 66, 166, 430, 701, 1164, 1312
HpyF10VI GCNNNNNNNGC 5 cut(s) 308, 548, 1364, 1370, 1457
HpyF3I CTNAG 5 cut(s) 951, 993, 1065, 1452, 1464
HpySE526I ACGT 1 cut(s) 728
Hsp92I GRCGYC 2 cut(s) 346, 1371
HspAI GCGC 2 cut(s) 1005, 1180
KpnI GGTACC 1 cut(s) 407
KspI CCGCGG 1 cut(s) 369
Kzo9I GATC 4 cut(s) 513, 713, 795, 1018
LguI GCTCTTC 2 cut(s) 174, 1082
LmnI GCTCC 4 cut(s) 97, 111, 253, 268
Lsp1109I GCAGC 6 cut(s) 195, 198, 314, 861, 1348, 1351
LweI GCATC 5 cut(s) 280, 439, 529, 710, 1173
MaeI CTAG 2 cut(s) 29, 1022
MaeII ACGT 1 cut(s) 728
MaeIII GTNAC 4 cut(s) 595, 706, 724, 1027
MalI GATC 4 cut(s) 515, 715, 797, 1020
MboI GATC 4 cut(s) 513, 713, 795, 1018
MflI RGATCY 2 cut(s) 513, 1018
MhlI GDGCHC 4 cut(s) 258, 805, 1077, 1336
MlsI TGGCCA 3 cut(s) 80, 461, 1044
MluCI AATT 8 cut(s) 556, 572, 651, 692, 778, 936, 1431, 1480
MluNI TGGCCA 3 cut(s) 80, 461, 1044
MlyI GAGTC 2 cut(s) 270, 557
Mox20I TGGCCA 3 cut(s) 80, 461, 1044
Mph1103I ATGCAT 1 cut(s) 703
MroXI GAANNNNTTC 1 cut(s) 633
MscI TGGCCA 3 cut(s) 80, 461, 1044
MseI TTAA 5 cut(s) 579, 747, 777, 935, 1344
MslI CAYNNNNRTG 1 cut(s) 1268
Msp20I TGGCCA 3 cut(s) 80, 461, 1044
MspA1I CMGCKG 3 cut(s) 305, 368, 1361
MspI CCGG 3 cut(s) 343, 517, 1469
MspR9I CCNGG 1 cut(s) 1195
MvaI CCWGG 1 cut(s) 1195
MvnI CGCG 1 cut(s) 368
MwoI GCNNNNNNNGC 5 cut(s) 308, 548, 1364, 1370, 1457
NcoI CCATGG 1 cut(s) 1405
NdeII GATC 4 cut(s) 513, 713, 795, 1018
NlaIV GGNNCC 2 cut(s) 405, 1276
NmuCI GTSAC 1 cut(s) 724
NsiI ATGCAT 1 cut(s) 703
NspI RCATGY 1 cut(s) 965
PagI TCATGA 1 cut(s) 982
PceI AGGCCT 1 cut(s) 1320
PciSI GCTCTTC 2 cut(s) 174, 1082
PdmI GAANNNNTTC 1 cut(s) 633
PfeI GAWTC 4 cut(s) 673, 766, 1084, 1157
PflMI CCANNNNNTGG 2 cut(s) 298, 1040
PleI GAGTC 2 cut(s) 269, 557
PpsI GAGTC 2 cut(s) 269, 557
PshAI GACNNNNGTC 1 cut(s) 494
PshBI ATTAAT 1 cut(s) 579
Psp124BI GAGCTC 1 cut(s) 805
Psp6I CCWGG 1 cut(s) 1193
PspFI CCCAGC 1 cut(s) 736
PspGI CCWGG 1 cut(s) 1193
PspN4I GGNNCC 2 cut(s) 405, 1276
PspPI GGNCC 3 cut(s) 139, 370, 610
PstNI CAGNNNCTG 1 cut(s) 1225
PsuI RGATCY 2 cut(s) 513, 1018
RsaI GTAC 4 cut(s) 35, 405, 791, 1240
RsaNI GTAC 4 cut(s) 34, 404, 790, 1239
RseI CAYNNNNRTG 1 cut(s) 1268
SacI GAGCTC 1 cut(s) 805
SacII CCGCGG 1 cut(s) 369
SapI GCTCTTC 2 cut(s) 174, 1082
SaqAI TTAA 5 cut(s) 579, 747, 777, 935, 1344
Sau3AI GATC 4 cut(s) 513, 713, 795, 1018
Sau96I GGNCC 3 cut(s) 139, 370, 610
ScaI AGTACT 1 cut(s) 1240
SchI GAGTC 2 cut(s) 270, 557
ScrFI CCNGG 1 cut(s) 1195
SduI GDGCHC 4 cut(s) 258, 805, 1077, 1336
SfaNI GCATC 5 cut(s) 280, 439, 529, 710, 1173
SfcI CTRYAG 1 cut(s) 417
Sfr303I CCGCGG 1 cut(s) 369
SgrBI CCGCGG 1 cut(s) 369
SinI GGWCC 1 cut(s) 610
SmiMI CAYNNNNRTG 1 cut(s) 1268
SmlI CTYRAG 1 cut(s) 956
SmoI CTYRAG 1 cut(s) 956
Sse9I AATT 8 cut(s) 556, 572, 651, 692, 778, 936, 1431, 1480
SseBI AGGCCT 1 cut(s) 1320
SspMI CTAG 2 cut(s) 29, 1022
SstI GAGCTC 1 cut(s) 805
StuI AGGCCT 1 cut(s) 1320
StyD4I CCNGG 1 cut(s) 1193
StyI CCWWGG 1 cut(s) 1405
TaaI ACNGT 6 cut(s) 70, 220, 408, 493, 633, 758
TaiI ACGT 1 cut(s) 731
TaqI TCGA 3 cut(s) 1113, 1155, 1299
TasI AATT 8 cut(s) 556, 572, 651, 692, 778, 936, 1431, 1480
TatI WGTACW 3 cut(s) 33, 789, 1238
TauI GCSGC 6 cut(s) 59, 120, 371, 551, 736, 1361
TfiI GAWTC 4 cut(s) 673, 766, 1084, 1157
Tru1I TTAA 5 cut(s) 579, 747, 777, 935, 1344
Tru9I TTAA 5 cut(s) 579, 747, 777, 935, 1344
TscAI CASTG 3 cut(s) 432, 527, 761
TseFI GTSAC 1 cut(s) 724
TseI GCWGC 6 cut(s) 208, 211, 302, 874, 1361, 1364
Tsp45I GTSAC 1 cut(s) 724
TspDTI ATGAA 9 cut(s) 171, 428, 436, 458, 524, 665, 1076, 1081, 1204
TspGWI ACGGA 1 cut(s) 273
TspRI CASTG 3 cut(s) 432, 527, 761
Van91I CCANNNNNTGG 2 cut(s) 298, 1040
VpaK11BI GGWCC 1 cut(s) 610
VspI ATTAAT 1 cut(s) 579
XapI RAATTY 2 cut(s) 651, 1431
XceI RCATGY 1 cut(s) 965
XcmI CCANNNNNNNNNTGG 4 cut(s) 247, 469, 1052, 1412
XmnI GAANNNNTTC 1 cut(s) 633
XspI CTAG 2 cut(s) 29, 1022
ZrmI AGTACT 1 cut(s) 1240
Zsp2I ATGCAT 1 cut(s) 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.