Rorug06G0235200

May be involved in modulation of pathogen defense and leaf cell death

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013845
Physical Location & Seq
Forward (+)
37776494 .. 37778993
2500 bp
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UTR
Exon/CDS
Intron
Rorug06G0235200.1

Sequence Viewer

Length: 1314 bp
ATGATGGCGACCGTACAGTTCCGTACGCTGCTGGTGGTGTCGGCGATGTTGAGGGTGGTTCTGATCGTGTACGGGGAGTGGCAGGATACCCACATGGAGGTGAGGTACACTGACATCGATTACGTGGTGTTCTCCGACGCAGCTTCACTAGTAGCTTCTGGTAAATCCCCATTTGAGAGATCCACGTACAGGTACTCTCCTCTGCTCGCGTTTTTGCTCCTACCCAATTCGATTCTTCATCGCTCTTGGGGTAAATTCATCTTCTCAGCTGCAGATTTGCTTGTGGGTTTGTTCATACGGACCATATTGAAGCTTCGTGGGGTGCCGGAGAATTTGTCTATGATTTCTGTGATGGCTTGGCTGTTTAATCCGTTTACGTTTACGATTGGGACTCGTGGAAACTGTGAGCCCATTGTTTGTGCTTTGATTCTTTGGGTCATTATATGTCTCATGAACGGACGTGTGTTACAAGCAGCATTTTGGTATGGACTTGTTGTCCACTTCCGAGTCTACCCCATTATCTATGCACTCCCTATTCTTCTGATTCTTGATCCTCATGTGTTTCGACCTGGTCAGAAACCTAGCCTTCAACGCTGGGATCATCGACAAGAATCACCTCAAAGCAGCTTTAAATCGAGACTTGCCTATCTGCTTCGGCCATGGTTAATTGTGAAAAGTGCATTTACACGAGACAGGATACTTTTTTCTCTCATATCTGGGGCCATATTCTTCCTTTTCACTGGTCTTTTCTATCATCTATATGGGTGGGATTTCCTGCACGAGTCACTGCTATATCATCTTACTCGAACTGATCCAAGGCACAATTTTTCCATTTATTTTTATCACATCTACCTTCAATATGAGCATAAAATCTCGGTACTGGAGAAGCTCATCTCATTTTTGCCTCAGTTGATAGTTCAGCTTGTTCTCATTCTGAGTTTCGCACAAGACCTTCCGTTCTGCTGCTTTGTGCAGACAGTGGCATTTGTGGCATTCAACAAGGTAATGACTGCACAATACTTTGTCTGGTTTTTCTGCCTCTTGCCCCTGTCACTTGCTTGGAGCAATATGAAGCTTAAATGGAAAGGCTTATCTTGCATAGCATTGTGGGTAGGTGGTCAACTTCATTGGTTGTGGTGGGGTTATATGCATGAGTTCAAGGGACGGAATGTCTTTCTTCAGCTGTGGGTGGCCGGCATCATGTTCCTATCTGCAAACACATATGTTTTGGTTTCACTCATCAATCATCACAGATGTTCTCCTGTTTTCACACGATTGGATAAAACTCTCAAGGGTGCGAAGAAATTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0016020 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mlo

Protein Analysis

437

Amino Acids

50.99

Weight (kDa)

9.65

Isoelectric Point (pI)

37.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-U PF06728 15 - 357 2.1e-12 GPI transamidase subunit PIG-U
Mannosyl_trans PF05007 129 - 414 3e-72 Mannosyltransferase (PIG-M)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013845)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02600 AT4G02600
fragaria_vesca FvH4_2g25260
malus_domestica MD03G1282200.v1.1
prunus_persica Prupe.8G257400_v2.0.a1
pyrus_communis pycom03g22300
rosa_chinensis RchiOBHm_Chr6g0293391
rosa_laevigata RLG00000011950
rosa_multiflora Rmu_co8483215.1_g000001 Rmu_sc0006269.1_g000024
rosa_roxburghii Rroxscaffold_7G00174190
rosa_rugosa Rorug06G0235200
rosa_samantha Rh6AG348100 Rh6BG355700 Rh6CG361800 Rh6DG348900
rosa_wichuraiana Rw6G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 322
AccI GTMKAC 1 cut(s) 510
AccII CGCG 1 cut(s) 209
AclWI GGATC 4 cut(s) 174, 545, 606, 806
AcoI YGGCCR 2 cut(s) 656, 1191
AcsI RAATTY 2 cut(s) 254, 331
AcuI CTGAAG 1 cut(s) 1163
AfaI GTAC 7 cut(s) 15, 25, 71, 107, 188, 194, 879
AfiI CCNNNNNNNGG 2 cut(s) 97, 189
AflIII ACRYGT 1 cut(s) 460
AgsI TTSAA 6 cut(s) 310, 590, 857, 997, 1159, 1309
AhdI GACNNNNNGTC 2 cut(s) 494, 1169
AhlI ACTAGT 1 cut(s) 148
AjiI CACGTC 1 cut(s) 461
AjnI CCWGG 1 cut(s) 568
AluBI AGCT 9 cut(s) 143, 155, 269, 313, 627, 889, 922, 1075, 1183
AluI AGCT 9 cut(s) 143, 155, 269, 313, 627, 889, 922, 1075, 1183
Alw26I GTCTC 3 cut(s) 452, 631, 684
AlwI GGATC 4 cut(s) 174, 545, 606, 806
AoxI GGCC 3 cut(s) 656, 720, 1191
ApeKI GCWGC 6 cut(s) 28, 140, 269, 473, 624, 963
ApoI RAATTY 2 cut(s) 254, 331
AspS9I GGNCC 2 cut(s) 300, 720
AsuHPI GGTGA 2 cut(s) 112, 606
AvaII GGWCC 1 cut(s) 300
BanI GGYRCC 1 cut(s) 322
BanII GRGCYC 1 cut(s) 411
BauI CACGAG 3 cut(s) 393, 687, 779
BbvI GCAGC 6 cut(s) 15, 152, 256, 485, 636, 950
BccI CCATC 1 cut(s) 346
BciT130I CCWGG 1 cut(s) 570
BciVI GTATCC 2 cut(s) 79, 690
BcoDI GTCTC 3 cut(s) 452, 631, 684
BcuI ACTAGT 1 cut(s) 148
BfaI CTAG 2 cut(s) 149, 582
BfmI CTRYAG 1 cut(s) 270
BfuI GTATCC 2 cut(s) 79, 690
BisI GCNGC 6 cut(s) 29, 141, 270, 474, 625, 964
BlsI GCNGC 6 cut(s) 30, 142, 271, 475, 626, 965
Bme1390I CCNGG 1 cut(s) 570
Bme18I GGWCC 1 cut(s) 300
BmeRI GACNNNNNGTC 2 cut(s) 494, 1169
BmgBI CACGTC 1 cut(s) 461
BmgT120I GGNCC 2 cut(s) 300, 720
BmiI GGNNCC 2 cut(s) 324, 721
BmrFI CCNGG 1 cut(s) 570
BmsI GCATC 1 cut(s) 1206
BpmI CTGGAG 1 cut(s) 902
BpuEI CTTGAG 1 cut(s) 1274
Bsa29I ATCGAT 1 cut(s) 117
BsaAI YACGTR 2 cut(s) 124, 186
BsaJI CCNNGG 2 cut(s) 659, 815
BsaXI ACNNNNNCTCC 4 cut(s) 89, 119, 320, 350
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 189
Bse118I RCCGGY 1 cut(s) 1193
Bse1I ACTGG 2 cut(s) 745, 885
BseBI CCWGG 1 cut(s) 570
BseCI ATCGAT 1 cut(s) 117
BseDI CCNNGG 2 cut(s) 659, 815
BseLI CCNNNNNNNGG 2 cut(s) 97, 189
BseMII CTCAG 3 cut(s) 279, 920, 926
BseNI ACTGG 2 cut(s) 745, 885
BseRI GAGGAG 1 cut(s) 189
BseXI GCAGC 6 cut(s) 15, 152, 256, 485, 636, 950
BseYI CCCAGC 1 cut(s) 594
BsgI GTGCAG 3 cut(s) 761, 992, 996
Bsh1236I CGCG 1 cut(s) 209
Bsh1285I CGRYCG 1 cut(s) 12
BshFI GGCC 3 cut(s) 658, 722, 1193
BshNI GGYRCC 1 cut(s) 322
BshVI ATCGAT 1 cut(s) 117
BsiEI CGRYCG 1 cut(s) 12
BsiSI CCGG 2 cut(s) 326, 1194
BsiWI CGTACG 1 cut(s) 23
BslFI GGGAC 2 cut(s) 403, 1176
BslI CCNNNNNNNGG 2 cut(s) 97, 189
BsmAI GTCTC 3 cut(s) 452, 631, 684
BsmFI GGGAC 2 cut(s) 403, 1176
BsmI GAATGC 1 cut(s) 992
BsnI GGCC 3 cut(s) 658, 722, 1193
Bsp1286I GDGCHC 1 cut(s) 411
Bsp143I GATC 5 cut(s) 63, 179, 550, 598, 811
Bsp19I CCATGG 1 cut(s) 659
BspANI GGCC 3 cut(s) 658, 722, 1193
BspCNI CTCAG 3 cut(s) 278, 919, 927
BspDI ATCGAT 1 cut(s) 117
BspFNI CGCG 1 cut(s) 209
BspHI TCATGA 1 cut(s) 450
BspLI GGNNCC 2 cut(s) 324, 721
BspMAI CTGCAG 1 cut(s) 274
BspPI GGATC 4 cut(s) 174, 545, 606, 806
BspT107I GGYRCC 1 cut(s) 322
BsrFI RCCGGY 1 cut(s) 1193
BsrI ACTGG 2 cut(s) 745, 885
BssAI RCCGGY 1 cut(s) 1193
BssECI CCNNGG 2 cut(s) 659, 815
BssMI GATC 5 cut(s) 63, 179, 550, 598, 811
BssSI CACGAG 3 cut(s) 393, 687, 779
BssT1I CCWWGG 2 cut(s) 659, 815
Bst2BI CACGAG 3 cut(s) 393, 687, 779
Bst2UI CCWGG 1 cut(s) 570
Bst4CI ACNGT 4 cut(s) 13, 18, 404, 979
BstBAI YACGTR 2 cut(s) 124, 186
BstC8I GCNNGC 2 cut(s) 207, 1195
BstDEI CTNAG 3 cut(s) 265, 906, 935
BstDSI CCRYGG 1 cut(s) 659
BstFNI CGCG 1 cut(s) 209
BstKTI GATC 5 cut(s) 66, 182, 553, 601, 814
BstMAI GTCTC 3 cut(s) 452, 631, 684
BstMBI GATC 5 cut(s) 63, 179, 550, 598, 811
BstMCI CGRYCG 1 cut(s) 12
BstMWI GCNNNNNNNGC 3 cut(s) 591, 989, 1095
BstNI CCWGG 1 cut(s) 570
BstSCI CCNGG 1 cut(s) 568
BstSFI CTRYAG 1 cut(s) 270
BstUI CGCG 1 cut(s) 209
BstV1I GCAGC 6 cut(s) 15, 152, 256, 485, 636, 950
BstX2I RGATCY 1 cut(s) 179
BstYI RGATCY 1 cut(s) 179
Bsu15I ATCGAT 1 cut(s) 117
BsuI GTATCC 2 cut(s) 79, 690
BsuRI GGCC 3 cut(s) 658, 722, 1193
BsuTUI ATCGAT 1 cut(s) 117
BtgI CCRYGG 1 cut(s) 659
BtgZI GCGATG 2 cut(s) 59, 224
BtrI CACGTC 1 cut(s) 461
BtsI GCAGTG 1 cut(s) 785
BtsIMutI CAGTG 4 cut(s) 108, 738, 785, 984
Cac8I GCNNGC 2 cut(s) 207, 1195
CciI TCATGA 1 cut(s) 450
Cfr10I RCCGGY 1 cut(s) 1193
Cfr13I GGNCC 2 cut(s) 300, 720
ClaI ATCGAT 1 cut(s) 117
CseI GACGC 1 cut(s) 146
CsiI ACCWGGT 1 cut(s) 568
Csp6I GTAC 7 cut(s) 14, 24, 70, 106, 187, 193, 878
CviAII CATG 6 cut(s) 94, 451, 557, 660, 1151, 1201
CviQI GTAC 7 cut(s) 14, 24, 70, 106, 187, 193, 878
DdeI CTNAG 3 cut(s) 265, 906, 935
DpnI GATC 5 cut(s) 65, 181, 552, 600, 813
DpnII GATC 5 cut(s) 63, 179, 550, 598, 811
DraI TTTAAA 1 cut(s) 631
DriI GACNNNNNGTC 2 cut(s) 494, 1169
EaeI YGGCCR 2 cut(s) 656, 1191
Eam1105I GACNNNNNGTC 2 cut(s) 494, 1169
Eco130I CCWWGG 2 cut(s) 659, 815
Eco24I GRGCYC 1 cut(s) 411
Eco47I GGWCC 1 cut(s) 300
Eco57I CTGAAG 1 cut(s) 1163
EcoRII CCWGG 1 cut(s) 568
EcoT14I CCWWGG 2 cut(s) 659, 815
EcoT22I ATGCAT 1 cut(s) 1152
EcoT38I GRGCYC 1 cut(s) 411
ErhI CCWWGG 2 cut(s) 659, 815
FaeI CATG 6 cut(s) 97, 454, 560, 663, 1154, 1204
FaqI GGGAC 2 cut(s) 403, 1176
FatI CATG 6 cut(s) 93, 450, 556, 659, 1150, 1200
FauNDI CATATG 1 cut(s) 1222
FblI GTMKAC 1 cut(s) 510
Fnu4HI GCNGC 6 cut(s) 29, 141, 270, 474, 625, 964
FriOI GRGCYC 1 cut(s) 411
Fsp4HI GCNGC 6 cut(s) 29, 141, 270, 474, 625, 964
FspBI CTAG 2 cut(s) 149, 582
GluI GCNGC 6 cut(s) 29, 141, 270, 474, 625, 964
GsaI CCCAGC 1 cut(s) 598
GsuI CTGGAG 1 cut(s) 902
HaeIII GGCC 3 cut(s) 658, 722, 1193
HapII CCGG 2 cut(s) 326, 1194
HgaI GACGC 1 cut(s) 146
Hin1II CATG 6 cut(s) 97, 454, 560, 663, 1154, 1204
HincII GTYRAC 1 cut(s) 1121
HindII GTYRAC 1 cut(s) 1121
HindIII AAGCTT 2 cut(s) 311, 1073
HinfI GANTC 7 cut(s) 232, 391, 427, 507, 544, 611, 782
HpaII CCGG 2 cut(s) 326, 1194
HphI GGTGA 2 cut(s) 112, 606
Hpy166II GTNNAC 7 cut(s) 70, 108, 375, 381, 499, 511, 1121
Hpy188I TCNGA 6 cut(s) 63, 136, 506, 543, 576, 936
Hpy188III TCNNGA 3 cut(s) 451, 548, 636
Hpy8I GTNNAC 7 cut(s) 70, 108, 375, 381, 499, 511, 1121
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 3 cut(s) 596, 863, 962
HpyCH4III ACNGT 4 cut(s) 13, 18, 404, 979
HpyCH4IV ACGT 4 cut(s) 123, 185, 377, 460
HpyCH4V TGCA 9 cut(s) 272, 527, 680, 778, 973, 1013, 1098, 1150, 1214
HpyF10VI GCNNNNNNNGC 3 cut(s) 591, 989, 1095
HpyF3I CTNAG 3 cut(s) 265, 906, 935
HpySE526I ACGT 4 cut(s) 123, 185, 377, 460
Hsp92II CATG 6 cut(s) 97, 454, 560, 663, 1154, 1204
KroI GCCGGC 1 cut(s) 1193
KroNI GCCGGC 1 cut(s) 1195
Kzo9I GATC 5 cut(s) 63, 179, 550, 598, 811
LmnI GCTCC 2 cut(s) 222, 1062
Lsp1109I GCAGC 6 cut(s) 15, 152, 256, 485, 636, 950
LweI GCATC 1 cut(s) 1206
MabI ACCWGGT 1 cut(s) 568
MaeI CTAG 2 cut(s) 149, 582
MaeII ACGT 4 cut(s) 123, 185, 377, 460
MaeIII GTNAC 3 cut(s) 465, 783, 1050
MalI GATC 5 cut(s) 65, 181, 552, 600, 813
MboI GATC 5 cut(s) 63, 179, 550, 598, 811
MboII GAAGA 6 cut(s) 227, 253, 530, 721, 1169, 1312
MflI RGATCY 1 cut(s) 179
MhlI GDGCHC 1 cut(s) 411
MluCI AATT 6 cut(s) 226, 254, 331, 666, 823, 1304
MlyI GAGTC 3 cut(s) 385, 516, 791
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 8 cut(s) 45, 91, 96, 210, 564, 627, 915, 1049
Mph1103I ATGCAT 1 cut(s) 1152
MroNI GCCGGC 1 cut(s) 1193
MseI TTAA 4 cut(s) 366, 630, 665, 1077
MslI CAYNNNNRTG 2 cut(s) 98, 759
MspA1I CMGCKG 2 cut(s) 269, 1183
MspI CCGG 2 cut(s) 326, 1194
MspR9I CCNGG 1 cut(s) 570
Mva1269I GAATGC 1 cut(s) 992
MvaI CCWGG 1 cut(s) 570
MvnI CGCG 1 cut(s) 209
MwoI GCNNNNNNNGC 3 cut(s) 591, 989, 1095
NaeI GCCGGC 1 cut(s) 1195
NcoI CCATGG 1 cut(s) 659
NdeI CATATG 1 cut(s) 1222
NdeII GATC 5 cut(s) 63, 179, 550, 598, 811
NgoMIV GCCGGC 1 cut(s) 1193
NlaIII CATG 6 cut(s) 97, 454, 560, 663, 1154, 1204
NlaIV GGNNCC 2 cut(s) 324, 721
NmuCI GTSAC 2 cut(s) 783, 1050
NsiI ATGCAT 1 cut(s) 1152
PagI TCATGA 1 cut(s) 450
PctI GAATGC 1 cut(s) 992
PdiI GCCGGC 1 cut(s) 1195
PfeI GAWTC 4 cut(s) 232, 427, 544, 611
Pfl23II CGTACG 1 cut(s) 23
PflFI GACNNNGTC 1 cut(s) 570
PkrI GCNGC 6 cut(s) 30, 142, 271, 475, 626, 965
PleI GAGTC 3 cut(s) 385, 515, 790
PpsI GAGTC 3 cut(s) 385, 515, 790
Ppu21I YACGTR 2 cut(s) 124, 186
Psp6I CCWGG 1 cut(s) 568
PspFI CCCAGC 1 cut(s) 594
PspGI CCWGG 1 cut(s) 568
PspLI CGTACG 1 cut(s) 23
PspN4I GGNNCC 2 cut(s) 324, 721
PspPI GGNCC 2 cut(s) 300, 720
PstI CTGCAG 1 cut(s) 274
PsuI RGATCY 1 cut(s) 179
PsyI GACNNNGTC 1 cut(s) 570
PvuII CAGCTG 2 cut(s) 269, 1183
RsaI GTAC 7 cut(s) 15, 25, 71, 107, 188, 194, 879
RsaNI GTAC 7 cut(s) 14, 24, 70, 106, 187, 193, 878
RseI CAYNNNNRTG 2 cut(s) 98, 759
SaqAI TTAA 4 cut(s) 366, 630, 665, 1077
SatI GCNGC 6 cut(s) 29, 141, 270, 474, 625, 964
Sau3AI GATC 5 cut(s) 63, 179, 550, 598, 811
Sau96I GGNCC 2 cut(s) 300, 720
SchI GAGTC 3 cut(s) 385, 516, 791
ScrFI CCNGG 1 cut(s) 570
SduI GDGCHC 1 cut(s) 411
SexAI ACCWGGT 1 cut(s) 568
SfaNI GCATC 1 cut(s) 1206
SfcI CTRYAG 1 cut(s) 270
SinI GGWCC 1 cut(s) 300
SmiMI CAYNNNNRTG 2 cut(s) 98, 759
SmlI CTYRAG 1 cut(s) 1289
SmoI CTYRAG 1 cut(s) 1289
SpeI ACTAGT 1 cut(s) 148
Sse9I AATT 6 cut(s) 226, 254, 331, 666, 823, 1304
SspMI CTAG 2 cut(s) 149, 582
StyD4I CCNGG 1 cut(s) 568
StyI CCWWGG 2 cut(s) 659, 815
TaaI ACNGT 4 cut(s) 13, 18, 404, 979
TaiI ACGT 4 cut(s) 126, 188, 380, 463
TaqI TCGA 6 cut(s) 117, 230, 565, 604, 635, 805
TasI AATT 6 cut(s) 226, 254, 331, 666, 823, 1304
TfiI GAWTC 4 cut(s) 232, 427, 544, 611
Tru1I TTAA 4 cut(s) 366, 630, 665, 1077
Tru9I TTAA 4 cut(s) 366, 630, 665, 1077
TscAI CASTG 4 cut(s) 115, 745, 792, 984
TseFI GTSAC 2 cut(s) 783, 1050
TseI GCWGC 6 cut(s) 28, 140, 269, 473, 624, 963
Tsp45I GTSAC 2 cut(s) 783, 1050
TspDTI ATGAA 6 cut(s) 227, 247, 283, 467, 1085, 1115
TspGWI ACGGA 6 cut(s) 11, 313, 360, 471, 945, 1180
TspRI CASTG 4 cut(s) 115, 745, 792, 984
Tth111I GACNNNGTC 1 cut(s) 570
VpaK11BI GGWCC 1 cut(s) 300
XapI RAATTY 2 cut(s) 254, 331
XmiI GTMKAC 1 cut(s) 510
XspI CTAG 2 cut(s) 149, 582
Zsp2I ATGCAT 1 cut(s) 1152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.