Rroxscaffold_7G00174190

May be involved in modulation of pathogen defense and leaf cell death

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0013845
Physical Location & Seq
Forward (+)
13934734 .. 13936251
1518 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00174190.1

Sequence Viewer

Length: 1518 bp
ATGAGTGGTGGTGAGGAAGAGAAAACGCTAGAGTACACGCCCACATGGGTTGTTGCGGCGGTCTGCACCGTCATCGTGGCCATTTCTCTGGCTCTGGAGCGTCTGCTCCACTACGGCGGCAAGTTCTTGAAGAAGAAGGGCCAGAAGCCTCTGTATGAAGCGTTGCAGAAAGTGAAGGAAGAGCTTATGCTGTTGGGCTTTATCTCGCTCCTGCTCACCGTTTTCCAGAATGTAATCGCCAAAATCTGCGTGCAGCACGGAGTCATGGAGCATCTTCTTCCTTGCAAACTCGAAGCGGAAACGGAAGCGGAAAACACCACTTCCCATTTTGCCCATTTCCGGCGTCTGGCAGAGGAAACCACCGCGGCCCAAAGTGGGTATTGCGAGCCAAAGGGTAAGGTACCGTTGCTATCCACAGAGGCACTGCATCATCTTCATATCTTCATCTTTGTTCTGGCGATTGTTCATGTGGTGTTCTGTGTTTTGACTGTGGTCTTCGGAGGGATGAAGATCCGGCAATGGAGAGCGTGGGAGGATGCGATTGCGGCACAGAATTATGACTCCCAACAATTTCTTAATAAAAAGCATAAGTTCACTCGTGTTCAGGAGCATGCTTTTATCAAAGAACGGTTTCTGGGAATGGGTAAAAATTCAGCCTTGTTGGGCTGGATTCATTCTTTTTTCAAGCAATTTTATGCATCTGTTACAAGATCGGATTATGTGACCTTGCGGCTGGGTTTTATTAACACCCACTGTCCGGCGAATCCTAAGTTTAATTTTCACAAGTACATGATCCGAGCTCTGGAAGATGATTTCAGAAAAGTGGTGGGTATAAGTTGGTATCTTTGGGTGTTTGTGGTGGTTTTCTTGCTGCTGAATGTGAATGGTTGGCATACCTATTTCTGGATTGCTTTCCTGCCTTTCTTTCTTTTAATTGCTGTGGGGACTAAGCTTGAGCATGTGATTACCCAAATGGCTCATGATGTTGCTGAGAAACACATAGCCATAGAGGGGGATCTAGTAGTTACACCATCCGATGGCCACTTTTGGTTTGGAAAGCCTAAGCTTGTGCTCTTCTTGATTCATTTCATCCTTTTCCAAAACGCTTTCGAGATTGCGTTTTTCTTCTGGATTTGGGTTCAGTATGGTTTCGACTCCTGCATCATGGGGCAAGTGCGCTACATTGTGCCCAGGCTTGTGATTGGGGTGTTCATTCAGGGGCTGTGTAGTTATAGTACTCTGCCACTCTATGCCATTATCACACAGATGGGGAGCTCCTTCAAGAAAGCTATATTCGATGACCATGTGCAAGTAGGCCTTGTTGGTTGGGCTCAAAAGGTTAAGAAAAAGAAGGCCGCTGCTGCTGACGCCTCCAGCTCTGGCTCTGGTTCTGTCCAAGCAAGTTCCCATGGTGGTATTGGCTCTGCTTTCGGAATTCAGATGGGGAAACTTGCTAAGAAGGCAACTAAGCCGGAGGAGAATAATTCAGACCAGAAGAAGGAGGAGGAGAATAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0016020 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mlo

Protein Analysis

505

Amino Acids

57.18

Weight (kDa)

8.94

Isoelectric Point (pI)

28.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 7 - 466 4e-192 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013845)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02600 AT4G02600
fragaria_vesca FvH4_2g25260
malus_domestica MD03G1282200.v1.1
prunus_persica Prupe.8G257400_v2.0.a1
pyrus_communis pycom03g22300
rosa_chinensis RchiOBHm_Chr6g0293391
rosa_laevigata RLG00000011950
rosa_multiflora Rmu_co8483215.1_g000001 Rmu_sc0006269.1_g000024
rosa_roxburghii Rroxscaffold_7G00174190
rosa_rugosa Rorug06G0235200
rosa_samantha Rh6AG348100 Rh6BG355700 Rh6CG361800 Rh6DG348900
rosa_wichuraiana Rw6G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 400
AccB1I GGYRCC 1 cut(s) 400
AccB7I CCANNNNNTGG 1 cut(s) 1037
AccII CGCG 1 cut(s) 365
AclWI GGATC 3 cut(s) 505, 787, 1023
AcoI YGGCCR 2 cut(s) 78, 1039
AcsI RAATTY 2 cut(s) 649, 1434
AcyI GRCGYC 2 cut(s) 343, 1368
AfaI GTAC 4 cut(s) 35, 402, 788, 1237
AfiI CCNNNNNNNGG 9 cut(s) 339, 346, 375, 757, 802, 903, 1011, 1037, 1498
AgsI TTSAA 3 cut(s) 130, 685, 1282
AjnI CCWGG 1 cut(s) 1190
AluBI AGCT 7 cut(s) 184, 800, 952, 1066, 1275, 1289, 1377
AluI AGCT 7 cut(s) 184, 800, 952, 1066, 1275, 1289, 1377
Alw21I GWGCWC 3 cut(s) 802, 1074, 1277
AlwI GGATC 3 cut(s) 505, 787, 1023
AlwNI CAGNNNCTG 1 cut(s) 1222
AoxI GGCC 6 cut(s) 78, 139, 366, 1039, 1315, 1353
ApeKI GCWGC 4 cut(s) 253, 871, 1358, 1361
ApoI RAATTY 2 cut(s) 649, 1434
Asp700I GAANNNNTTC 1 cut(s) 630
Asp718I GGTACC 1 cut(s) 400
AspLEI GCGC 1 cut(s) 1179
AspS9I GGNCC 2 cut(s) 139, 367
AsuHPI GGTGA 2 cut(s) 23, 208
BaeGI GKGCMC 1 cut(s) 1191
BalI TGGCCA 2 cut(s) 80, 1041
BanI GGYRCC 1 cut(s) 400
BanII GRGCYC 3 cut(s) 802, 1277, 1333
BauI CACGAG 1 cut(s) 597
BbsI GAAGAC 1 cut(s) 487
Bbv12I GWGCWC 3 cut(s) 802, 1074, 1277
BbvI GCAGC 4 cut(s) 265, 858, 1345, 1348
BccI CCATC 4 cut(s) 1031, 1039, 1261, 1435
BceAI ACGGC 1 cut(s) 130
BcgI CGANNNNNNTGC 2 cut(s) 55, 89
BciT130I CCWGG 1 cut(s) 1192
BfaI CTAG 2 cut(s) 29, 1019
BmcAI AGTACT 1 cut(s) 1237
Bme1390I CCNGG 1 cut(s) 1192
BmgT120I GGNCC 2 cut(s) 139, 367
BmiI GGNNCC 1 cut(s) 402
BmrFI CCNGG 1 cut(s) 1192
BmsI GCATC 5 cut(s) 280, 436, 526, 707, 1170
BoxI GACNNNNGTC 1 cut(s) 491
BpiI GAAGAC 1 cut(s) 487
BpmI CTGGAG 2 cut(s) 116, 1357
Bpu10I CCTNAGC 1 cut(s) 1062
BpuEI CTTGAG 1 cut(s) 974
BsaBI GATNNNNATC 1 cut(s) 509
BsaHI GRCGYC 2 cut(s) 343, 1368
BsaJI CCNNGG 3 cut(s) 363, 1190, 1408
Bsc4I CCNNNNNNNGG 9 cut(s) 339, 346, 375, 757, 802, 903, 1011, 1037, 1498
Bse3DI GCAATG 1 cut(s) 524
Bse8I GATNNNNATC 1 cut(s) 509
BseBI CCWGG 1 cut(s) 1192
BseDI CCNNGG 3 cut(s) 363, 1190, 1408
BseGI GGATG 4 cut(s) 510, 541, 1031, 1089
BseJI GATNNNNATC 1 cut(s) 509
BseLI CCNNNNNNNGG 9 cut(s) 339, 346, 375, 757, 802, 903, 1011, 1037, 1498
BseMI GCAATG 1 cut(s) 524
BseMII CTCAG 1 cut(s) 981
BseRI GAGGAG 2 cut(s) 1490, 1517
BseSI GKGCMC 1 cut(s) 1191
BseXI GCAGC 4 cut(s) 265, 858, 1345, 1348
BseYI CCCAGC 1 cut(s) 733
BsgI GTGCAG 2 cut(s) 49, 272
Bsh1236I CGCG 1 cut(s) 365
BshFI GGCC 6 cut(s) 80, 141, 368, 1041, 1317, 1355
BshNI GGYRCC 1 cut(s) 400
BsiHKAI GWGCWC 3 cut(s) 802, 1074, 1277
BsiSI CCGG 4 cut(s) 340, 514, 758, 1472
BslFI GGGAC 1 cut(s) 958
BslI CCNNNNNNNGG 9 cut(s) 339, 346, 375, 757, 802, 903, 1011, 1037, 1498
BsmFI GGGAC 1 cut(s) 958
BsnI GGCC 6 cut(s) 80, 141, 368, 1041, 1317, 1355
Bsp1286I GDGCHC 5 cut(s) 802, 1074, 1191, 1277, 1333
Bsp143I GATC 4 cut(s) 510, 710, 792, 1015
Bsp19I CCATGG 1 cut(s) 1408
BspANI GGCC 6 cut(s) 80, 141, 368, 1041, 1317, 1355
BspCNI CTCAG 1 cut(s) 982
BspFNI CGCG 1 cut(s) 365
BspHI TCATGA 1 cut(s) 979
BspLI GGNNCC 1 cut(s) 402
BspPI GGATC 3 cut(s) 505, 787, 1023
BspQI GCTCTTC 2 cut(s) 174, 1079
BspT107I GGYRCC 1 cut(s) 400
BsrDI GCAATG 1 cut(s) 524
BssECI CCNNGG 3 cut(s) 363, 1190, 1408
BssMI GATC 4 cut(s) 510, 710, 792, 1015
BssNI GRCGYC 2 cut(s) 343, 1368
BssSI CACGAG 1 cut(s) 597
BssT1I CCWWGG 1 cut(s) 1408
Bst2BI CACGAG 1 cut(s) 597
Bst2UI CCWGG 1 cut(s) 1192
Bst4CI ACNGT 6 cut(s) 70, 220, 405, 490, 630, 755
Bst6I CTCTTC 3 cut(s) 12, 174, 1079
BstACI GRCGYC 2 cut(s) 343, 1368
BstC8I GCNNGC 3 cut(s) 251, 386, 612
BstDEI CTNAG 6 cut(s) 768, 948, 990, 1062, 1455, 1467
BstDSI CCRYGG 2 cut(s) 363, 1408
BstF5I GGATG 4 cut(s) 510, 541, 1031, 1089
BstFNI CGCG 1 cut(s) 365
BstHHI GCGC 1 cut(s) 1179
BstKTI GATC 4 cut(s) 513, 713, 795, 1018
BstMBI GATC 4 cut(s) 510, 710, 792, 1015
BstMWI GCNNNNNNNGC 4 cut(s) 545, 1361, 1367, 1460
BstNI CCWGG 1 cut(s) 1192
BstNSI RCATGY 2 cut(s) 614, 962
BstPAI GACNNNNGTC 1 cut(s) 491
BstSCI CCNGG 1 cut(s) 1190
BstSLI GKGCMC 1 cut(s) 1191
BstUI CGCG 1 cut(s) 365
BstV1I GCAGC 4 cut(s) 265, 858, 1345, 1348
BstV2I GAAGAC 1 cut(s) 487
BstX2I RGATCY 2 cut(s) 510, 1015
BstXI CCANNNNNNTGG 1 cut(s) 88
BstYI RGATCY 2 cut(s) 510, 1015
BsuRI GGCC 6 cut(s) 80, 141, 368, 1041, 1317, 1355
BtgI CCRYGG 2 cut(s) 363, 1408
BtsCI GGATG 4 cut(s) 510, 541, 1031, 1089
BtsI GCAGTG 1 cut(s) 422
BtsIMutI CAGTG 2 cut(s) 422, 751
Cac8I GCNNGC 3 cut(s) 251, 386, 612
CaiI CAGNNNCTG 1 cut(s) 1222
CciI TCATGA 1 cut(s) 979
CfoI GCGC 1 cut(s) 1179
Cfr13I GGNCC 2 cut(s) 139, 367
Cfr42I CCGCGG 1 cut(s) 366
CseI GACGC 3 cut(s) 89, 332, 1376
Csp6I GTAC 4 cut(s) 34, 401, 787, 1236
CspCI CAANNNNNGTGG 2 cut(s) 31, 66
CviQI GTAC 4 cut(s) 34, 401, 787, 1236
DdeI CTNAG 6 cut(s) 768, 948, 990, 1062, 1455, 1467
DpnI GATC 4 cut(s) 512, 712, 794, 1017
DpnII GATC 4 cut(s) 510, 710, 792, 1015
EaeI YGGCCR 2 cut(s) 78, 1039
Eam1104I CTCTTC 3 cut(s) 12, 174, 1079
EarI CTCTTC 3 cut(s) 12, 174, 1079
Ecl136II GAGCTC 2 cut(s) 800, 1275
Eco130I CCWWGG 1 cut(s) 1408
Eco147I AGGCCT 1 cut(s) 1317
Eco24I GRGCYC 3 cut(s) 802, 1277, 1333
Eco53kI GAGCTC 2 cut(s) 800, 1275
EcoICRI GAGCTC 2 cut(s) 800, 1275
EcoRI GAATTC 1 cut(s) 1434
EcoRII CCWGG 1 cut(s) 1190
EcoT14I CCWWGG 1 cut(s) 1408
EcoT22I ATGCAT 1 cut(s) 700
EcoT38I GRGCYC 3 cut(s) 802, 1277, 1333
ErhI CCWWGG 1 cut(s) 1408
FalI AAGNNNNNCTT 2 cut(s) 1302, 1334
FaqI GGGAC 1 cut(s) 958
FokI GGATG 4 cut(s) 517, 548, 1018, 1076
FriOI GRGCYC 3 cut(s) 802, 1277, 1333
FspBI CTAG 2 cut(s) 29, 1019
GlaI GCGC 1 cut(s) 1178
GsaI CCCAGC 1 cut(s) 737
GsuI CTGGAG 2 cut(s) 116, 1357
HaeIII GGCC 6 cut(s) 80, 141, 368, 1041, 1317, 1355
HapII CCGG 4 cut(s) 340, 514, 758, 1472
HgaI GACGC 3 cut(s) 89, 332, 1376
HhaI GCGC 1 cut(s) 1179
Hin1I GRCGYC 2 cut(s) 343, 1368
Hin6I GCGC 1 cut(s) 1177
HinP1I GCGC 1 cut(s) 1177
HindIII AAGCTT 2 cut(s) 950, 1064
HinfI GANTC 6 cut(s) 261, 560, 670, 763, 1081, 1154
HpaII CCGG 4 cut(s) 340, 514, 758, 1472
HphI GGTGA 2 cut(s) 23, 208
Hpy166II GTNNAC 2 cut(s) 36, 594
Hpy188I TCNGA 8 cut(s) 500, 715, 797, 818, 1036, 1433, 1440, 1489
Hpy8I GTNNAC 2 cut(s) 36, 594
HpyAV CCTTC 6 cut(s) 130, 169, 1288, 1345, 1453, 1492
HpyCH4III ACNGT 6 cut(s) 70, 220, 405, 490, 630, 755
HpyCH4V TGCA 8 cut(s) 66, 166, 253, 285, 427, 698, 1161, 1309
HpyF10VI GCNNNNNNNGC 4 cut(s) 545, 1361, 1367, 1460
HpyF3I CTNAG 6 cut(s) 768, 948, 990, 1062, 1455, 1467
Hsp92I GRCGYC 2 cut(s) 343, 1368
HspAI GCGC 1 cut(s) 1177
KpnI GGTACC 1 cut(s) 404
KspI CCGCGG 1 cut(s) 366
Kzo9I GATC 4 cut(s) 510, 710, 792, 1015
LguI GCTCTTC 2 cut(s) 174, 1079
LmnI GCTCC 7 cut(s) 97, 111, 213, 268, 607, 1272, 1280
Lsp1109I GCAGC 4 cut(s) 265, 858, 1345, 1348
LweI GCATC 5 cut(s) 280, 436, 526, 707, 1170
MaeI CTAG 2 cut(s) 29, 1019
MaeIII GTNAC 3 cut(s) 703, 721, 1024
MalI GATC 4 cut(s) 512, 712, 794, 1017
MboI GATC 4 cut(s) 510, 710, 792, 1015
MflI RGATCY 2 cut(s) 510, 1015
MhlI GDGCHC 5 cut(s) 802, 1074, 1191, 1277, 1333
MlsI TGGCCA 2 cut(s) 80, 1041
MluCI AATT 8 cut(s) 553, 569, 649, 689, 775, 933, 1434, 1483
MluNI TGGCCA 2 cut(s) 80, 1041
MlyI GAGTC 3 cut(s) 270, 554, 1148
Mox20I TGGCCA 2 cut(s) 80, 1041
Mph1103I ATGCAT 1 cut(s) 700
MroXI GAANNNNTTC 1 cut(s) 630
MscI TGGCCA 2 cut(s) 80, 1041
MseI TTAA 5 cut(s) 576, 744, 774, 932, 1341
MslI CAYNNNNRTG 1 cut(s) 1265
Msp20I TGGCCA 2 cut(s) 80, 1041
MspA1I CMGCKG 2 cut(s) 365, 1358
MspI CCGG 4 cut(s) 340, 514, 758, 1472
MspR9I CCNGG 1 cut(s) 1192
MvaI CCWGG 1 cut(s) 1192
MvnI CGCG 1 cut(s) 365
MwoI GCNNNNNNNGC 4 cut(s) 545, 1361, 1367, 1460
NcoI CCATGG 1 cut(s) 1408
NdeII GATC 4 cut(s) 510, 710, 792, 1015
NlaIV GGNNCC 1 cut(s) 402
NmuCI GTSAC 1 cut(s) 721
NsiI ATGCAT 1 cut(s) 700
NspI RCATGY 2 cut(s) 614, 962
PaeI GCATGC 1 cut(s) 614
PagI TCATGA 1 cut(s) 979
PceI AGGCCT 1 cut(s) 1317
PciSI GCTCTTC 2 cut(s) 174, 1079
PdmI GAANNNNTTC 1 cut(s) 630
PfeI GAWTC 3 cut(s) 670, 763, 1081
PflMI CCANNNNNTGG 1 cut(s) 1037
PleI GAGTC 3 cut(s) 269, 554, 1148
PpsI GAGTC 3 cut(s) 269, 554, 1148
PshAI GACNNNNGTC 1 cut(s) 491
Psp124BI GAGCTC 2 cut(s) 802, 1277
Psp6I CCWGG 1 cut(s) 1190
PspFI CCCAGC 1 cut(s) 733
PspGI CCWGG 1 cut(s) 1190
PspN4I GGNNCC 1 cut(s) 402
PspPI GGNCC 2 cut(s) 139, 367
PstNI CAGNNNCTG 1 cut(s) 1222
PsuI RGATCY 2 cut(s) 510, 1015
RsaI GTAC 4 cut(s) 35, 402, 788, 1237
RsaNI GTAC 4 cut(s) 34, 401, 787, 1236
RseI CAYNNNNRTG 1 cut(s) 1265
SacI GAGCTC 2 cut(s) 802, 1277
SacII CCGCGG 1 cut(s) 366
SapI GCTCTTC 2 cut(s) 174, 1079
SaqAI TTAA 5 cut(s) 576, 744, 774, 932, 1341
Sau3AI GATC 4 cut(s) 510, 710, 792, 1015
Sau96I GGNCC 2 cut(s) 139, 367
ScaI AGTACT 1 cut(s) 1237
SchI GAGTC 3 cut(s) 270, 554, 1148
ScrFI CCNGG 1 cut(s) 1192
SduI GDGCHC 5 cut(s) 802, 1074, 1191, 1277, 1333
SfaNI GCATC 5 cut(s) 280, 436, 526, 707, 1170
Sfr303I CCGCGG 1 cut(s) 366
SgrBI CCGCGG 1 cut(s) 366
SmiMI CAYNNNNRTG 1 cut(s) 1265
SmlI CTYRAG 1 cut(s) 953
SmoI CTYRAG 1 cut(s) 953
SphI GCATGC 1 cut(s) 614
Sse9I AATT 8 cut(s) 553, 569, 649, 689, 775, 933, 1434, 1483
SseBI AGGCCT 1 cut(s) 1317
SspMI CTAG 2 cut(s) 29, 1019
SstI GAGCTC 2 cut(s) 802, 1277
StuI AGGCCT 1 cut(s) 1317
StyD4I CCNGG 1 cut(s) 1190
StyI CCWWGG 1 cut(s) 1408
TaaI ACNGT 6 cut(s) 70, 220, 405, 490, 630, 755
TaqI TCGA 4 cut(s) 291, 1110, 1152, 1296
TasI AATT 8 cut(s) 553, 569, 649, 689, 775, 933, 1434, 1483
TatI WGTACW 3 cut(s) 33, 786, 1235
TauI GCSGC 6 cut(s) 59, 120, 368, 548, 733, 1358
TfiI GAWTC 3 cut(s) 670, 763, 1081
Tru1I TTAA 5 cut(s) 576, 744, 774, 932, 1341
Tru9I TTAA 5 cut(s) 576, 744, 774, 932, 1341
TscAI CASTG 2 cut(s) 429, 758
TseFI GTSAC 1 cut(s) 721
TseI GCWGC 4 cut(s) 253, 871, 1358, 1361
Tsp45I GTSAC 1 cut(s) 721
TspDTI ATGAA 9 cut(s) 171, 425, 433, 455, 521, 662, 1073, 1078, 1201
TspGWI ACGGA 2 cut(s) 273, 317
TspRI CASTG 2 cut(s) 429, 758
Van91I CCANNNNNTGG 1 cut(s) 1037
XapI RAATTY 2 cut(s) 649, 1434
XceI RCATGY 2 cut(s) 614, 962
XcmI CCANNNNNNNNNTGG 2 cut(s) 1049, 1415
XmnI GAANNNNTTC 1 cut(s) 630
XspI CTAG 2 cut(s) 29, 1019
ZrmI AGTACT 1 cut(s) 1237
Zsp2I ATGCAT 1 cut(s) 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.