Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0021545

Physical Location & Seq

Genomic Coordinates Reverse (-)

14687837 .. 14688391

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012033

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGCCATTAAGCGCCAAATTCGAGCTCCTTCAATGGACGAACCCCAAATATGCTGGGAGGAGGAAGAGCAAGGGGAATGTAGAGAGTGGTTCTGATGAAAAGCAGCTTACAAAAGGGCAAGAAGAGAAGCCTTATGAGAGGGATTATGTGGTAATGAGGCTGAAGAAAGTGAAGTTGGGGGAGCATGACAAGCTGTCGAAGAAGTTTAGGCATAAGGAAGCTCTAGTCTCTGTGTTGGGGGGGAGTAAGAATCTGGAGAATGCTGCGGCTGTGATGGAGGAATTGGTGTCGAGAAAGAAGTTGATTAAATGTGCTTCGAATTTGGATCTGGAGGAGCTGGGACTGTTGCTGGTGTTTTTGCAGAAGCACTCCACGGTGCCAAGGTACTCGAGATTGTTGATGGGGTTGACACAGATGGTTGTTGAGATGAGGCTTAAGAAATTAGAGATTCTCAGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0031461 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

UTP15_C WD40

Protein Analysis

154

Amino Acids

17.56

Weight (kDa)

9.83

Isoelectric Point (pI)

33.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UTP15_C	PF09384	42 - 147	2.2e-21	UTP15 C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0021545)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000012033
rosa_multiflora	Rmu_sc0001354.1_g000015
rosa_roxburghii	Rroxscaffold_7G00175110
rosa_samantha	Rh6AG339500 Rh7AG293700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	376
AciI	CCGC	1 cut(s)	266
AclWI	GGATC	1 cut(s)	333
AcsI	RAATTY	2 cut(s)	17, 319
AcuI	CTGAAG	1 cut(s)	182
AfaI	GTAC	1 cut(s)	386
AflII	CTTAAG	1 cut(s)	434
AgsI	TTSAA	1 cut(s)	32
AhdI	GACNNNNNGTC	1 cut(s)	193
AjuI	GAANNNNNNNTTGG	2 cut(s)	158, 190
AluBI	AGCT	6 cut(s)	25, 106, 193, 221, 337, 459
AluI	AGCT	6 cut(s)	25, 106, 193, 221, 337, 459
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	1 cut(s)	232
AlwI	GGATC	1 cut(s)	333
AlwNI	CAGNNNCTG	1 cut(s)	459
Ama87I	CYCGRG	1 cut(s)	388
ApeKI	GCWGC	2 cut(s)	103, 263
ApoI	RAATTY	2 cut(s)	17, 319
AspLEI	GCGC	1 cut(s)	14
AsuII	TTCGAA	1 cut(s)	317
AvaI	CYCGRG	1 cut(s)	388
BanI	GGYRCC	1 cut(s)	376
BanII	GRGCYC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	2 cut(s)	115, 250
BccI	CCATC	3 cut(s)	268, 394, 409
BcoDI	GTCTC	1 cut(s)	232
BfaI	CTAG	1 cut(s)	224
BfoI	RGCGCY	1 cut(s)	15
BfrI	CTTAAG	1 cut(s)	434
BisI	GCNGC	3 cut(s)	104, 264, 267
BlsI	GCNGC	3 cut(s)	105, 265, 268
BmeRI	GACNNNNNGTC	1 cut(s)	193
BmeT110I	CYCGRG	1 cut(s)	388
BmiI	GGNNCC	1 cut(s)	378
BpmI	CTGGAG	2 cut(s)	275, 350
Bpu14I	TTCGAA	1 cut(s)	317
BsaJI	CCNNGG	2 cut(s)	372, 380
BseDI	CCNNGG	2 cut(s)	372, 380
BseRI	GAGGAG	2 cut(s)	73, 347
BseXI	GCAGC	2 cut(s)	115, 250
BseYI	CCCAGC	2 cut(s)	53, 337
BshNI	GGYRCC	1 cut(s)	376
BsiHKAI	GWGCWC	1 cut(s)	27
BsiHKCI	CYCGRG	1 cut(s)	388
BslFI	GGGAC	1 cut(s)	354
BsmAI	GTCTC	1 cut(s)	232
BsmFI	GGGAC	1 cut(s)	354
BsmI	GAATGC	1 cut(s)	265
BsoBI	CYCGRG	1 cut(s)	388
Bsp119I	TTCGAA	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	325
BspACI	CCGC	1 cut(s)	266
BspLI	GGNNCC	1 cut(s)	378
BspPI	GGATC	1 cut(s)	333
BspQI	GCTCTTC	1 cut(s)	59
BspT104I	TTCGAA	1 cut(s)	317
BspT107I	GGYRCC	1 cut(s)	376
BspTI	CTTAAG	1 cut(s)	434
BssECI	CCNNGG	2 cut(s)	372, 380
BssMI	GATC	1 cut(s)	325
BssT1I	CCWWGG	1 cut(s)	380
Bst4CI	ACNGT	2 cut(s)	345, 376
Bst6I	CTCTTC	2 cut(s)	59, 117
BstAFI	CTTAAG	1 cut(s)	434
BstBI	TTCGAA	1 cut(s)	317
BstDEI	CTNAG	1 cut(s)	452
BstDSI	CCRYGG	1 cut(s)	372
BstH2I	RGCGCY	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	1 cut(s)	328
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	325
BstMWI	GCNNNNNNNGC	1 cut(s)	190
BstV1I	GCAGC	2 cut(s)	115, 250
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BtgI	CCRYGG	1 cut(s)	372
CaiI	CAGNNNCTG	1 cut(s)	459
CfoI	GCGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	385
CviAII	CATG	1 cut(s)	185
CviQI	GTAC	1 cut(s)	385
DdeI	CTNAG	1 cut(s)	452
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
DriI	GACNNNNNGTC	1 cut(s)	193
Eam1104I	CTCTTC	2 cut(s)	59, 117
Eam1105I	GACNNNNNGTC	1 cut(s)	193
EarI	CTCTTC	2 cut(s)	59, 117
Ecl136II	GAGCTC	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	380
Eco24I	GRGCYC	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	182
Eco88I	CYCGRG	1 cut(s)	388
EcoICRI	GAGCTC	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	380
EcoT38I	GRGCYC	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	380
FaeI	CATG	1 cut(s)	188
FaiI	YATR	5 cut(s)	51, 135, 147, 186, 213
FaqI	GGGAC	1 cut(s)	354
FatI	CATG	1 cut(s)	184
Fnu4HI	GCNGC	3 cut(s)	104, 264, 267
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	3 cut(s)	104, 264, 267
FspBI	CTAG	1 cut(s)	224
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	3 cut(s)	104, 264, 267
GsaI	CCCAGC	2 cut(s)	57, 341
GsuI	CTGGAG	2 cut(s)	275, 350
HaeII	RGCGCY	1 cut(s)	15
HhaI	GCGC	1 cut(s)	14
Hin1II	CATG	1 cut(s)	188
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HincII	GTYRAC	1 cut(s)	408
HindII	GTYRAC	1 cut(s)	408
HinfI	GANTC	2 cut(s)	250, 448
Hpy166II	GTNNAC	1 cut(s)	408
Hpy188I	TCNGA	1 cut(s)	94
Hpy188III	TCNNGA	5 cut(s)	254, 291, 329, 390, 454
Hpy8I	GTNNAC	1 cut(s)	408
HpyAV	CCTTC	1 cut(s)	38
HpyCH4III	ACNGT	2 cut(s)	345, 376
HpyCH4V	TGCA	1 cut(s)	361
HpyF10VI	GCNNNNNNNGC	1 cut(s)	190
HpyF3I	CTNAG	1 cut(s)	452
Hsp92II	CATG	1 cut(s)	188
HspAI	GCGC	1 cut(s)	12
Kzo9I	GATC	1 cut(s)	325
LguI	GCTCTTC	1 cut(s)	59
LmnI	GCTCC	4 cut(s)	30, 181, 334, 456
LpnPI	CCDG	6 cut(s)	39, 239, 314, 323, 335, 439
Lsp1109I	GCAGC	2 cut(s)	115, 250
MaeI	CTAG	1 cut(s)	224
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	4 cut(s)	76, 134, 175, 211
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	4 cut(s)	17, 281, 319, 440
MnlI	CCTC	7 cut(s)	51, 54, 132, 150, 271, 325, 423
MseI	TTAA	3 cut(s)	8, 306, 435
MspCI	CTTAAG	1 cut(s)	434
Mva1269I	GAATGC	1 cut(s)	265
MwoI	GCNNNNNNNGC	1 cut(s)	190
NdeII	GATC	1 cut(s)	325
NlaIII	CATG	1 cut(s)	188
NlaIV	GGNNCC	1 cut(s)	378
NspV	TTCGAA	1 cut(s)	317
PaeR7I	CTCGAG	1 cut(s)	388
PciSI	GCTCTTC	1 cut(s)	59
PctI	GAATGC	1 cut(s)	265
PfeI	GAWTC	2 cut(s)	250, 448
PkrI	GCNGC	3 cut(s)	105, 265, 268
Psp124BI	GAGCTC	1 cut(s)	27
PspFI	CCCAGC	2 cut(s)	53, 337
PspN4I	GGNNCC	1 cut(s)	378
PstNI	CAGNNNCTG	1 cut(s)	459
PsuI	RGATCY	1 cut(s)	325
RsaI	GTAC	1 cut(s)	386
RsaNI	GTAC	1 cut(s)	385
SacI	GAGCTC	1 cut(s)	27
SapI	GCTCTTC	1 cut(s)	59
SaqAI	TTAA	3 cut(s)	8, 306, 435
SatI	GCNGC	3 cut(s)	104, 264, 267
Sau3AI	GATC	1 cut(s)	325
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	7 cut(s)	27, 108, 195, 223, 339, 386, 461
Sfr274I	CTCGAG	1 cut(s)	388
SfuI	TTCGAA	1 cut(s)	317
SlaI	CTCGAG	1 cut(s)	388
SmlI	CTYRAG	2 cut(s)	388, 434
SmoI	CTYRAG	2 cut(s)	388, 434
Sse9I	AATT	4 cut(s)	17, 281, 319, 440
SsiI	CCGC	1 cut(s)	266
SspMI	CTAG	1 cut(s)	224
SstI	GAGCTC	1 cut(s)	27
StyI	CCWWGG	1 cut(s)	380
TaaI	ACNGT	2 cut(s)	345, 376
TaqI	TCGA	5 cut(s)	21, 197, 290, 317, 389
TasI	AATT	4 cut(s)	17, 281, 319, 440
TauI	GCSGC	1 cut(s)	269
TfiI	GAWTC	2 cut(s)	250, 448
Tru1I	TTAA	3 cut(s)	8, 306, 435
Tru9I	TTAA	3 cut(s)	8, 306, 435
TseI	GCWGC	2 cut(s)	103, 263
TspDTI	ATGAA	1 cut(s)	111
Vha464I	CTTAAG	1 cut(s)	434
XapI	RAATTY	2 cut(s)	17, 319
XhoI	CTCGAG	1 cut(s)	388
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.