Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0021545

Physical Location & Seq

Genomic Coordinates Reverse (-)

32004597 .. 32004953

Gene Structure 357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG293700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGAGGCCGAAGAAAGTGAAGTTGGGGGAGCATGATAAGCTGTTGAAGAAGTTTAGGCATAAGGAAGCTCTGGTGTCTGTATTGGGGAGGACTAAGAATCCGGAGAATGCTGTGGCTGTGATGGAAGAATTGGTGTCGAGAAAGAAGTTGCTGAAATGTGTTTCGAATTTGGATTTGGAGGAGCTCGGAATGTTGCTGATGTTTTTGCAGAGGTACTCGACCATGCCAAGGTACTCGAGGTTGTTGATGGGTTTGACAGAGAAGGTTATTGAGATGAGGGCTGACGACATTAGAGCTTCTACAGAGTTGAAGGGTCTTTTTAGAAACATTAAACGTGCTGTCGAGGAGGAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0031461 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

UTP15_C WD40

Protein Analysis

118

Amino Acids

13.74

Weight (kDa)

9.79

Isoelectric Point (pI)

39.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UTP15_C	PF09384	2 - 118	3.1e-31	UTP15 C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0021545)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000012033
rosa_multiflora	Rmu_sc0001354.1_g000015
rosa_roxburghii	Rroxscaffold_7G00175110
rosa_samantha	Rh6AG339500 Rh7AG293700

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	166
AfaI	GTAC	2 cut(s)	215, 233
AfiI	CCNNNNNNNGG	1 cut(s)	228
AgsI	TTSAA	2 cut(s)	46, 310
AjuI	GAANNNNNNNTTGG	3 cut(s)	37, 158, 190
AluBI	AGCT	4 cut(s)	40, 68, 184, 296
AluI	AGCT	4 cut(s)	40, 68, 184, 296
Alw21I	GWGCWC	1 cut(s)	186
Ama87I	CYCGRG	1 cut(s)	235
Aor13HI	TCCGGA	1 cut(s)	100
AoxI	GGCC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	166
AsuII	TTCGAA	1 cut(s)	164
AvaI	CYCGRG	1 cut(s)	235
BanII	GRGCYC	1 cut(s)	186
Bbv12I	GWGCWC	1 cut(s)	186
BccI	CCATC	2 cut(s)	115, 241
BfmI	CTRYAG	1 cut(s)	300
BmeT110I	CYCGRG	1 cut(s)	235
Bpu14I	TTCGAA	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	227
BsaWI	WCCGGW	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
BseAI	TCCGGA	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	227
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseRI	GAGGAG	1 cut(s)	194
BshFI	GGCC	1 cut(s)	7
BsiHKAI	GWGCWC	1 cut(s)	186
BsiHKCI	CYCGRG	1 cut(s)	235
BsiSI	CCGG	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	228
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	7
BsoBI	CYCGRG	1 cut(s)	235
Bsp119I	TTCGAA	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp13I	TCCGGA	1 cut(s)	100
BspANI	GGCC	1 cut(s)	7
BspEI	TCCGGA	1 cut(s)	100
BspT104I	TTCGAA	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	227
BssT1I	CCWWGG	1 cut(s)	227
BstBI	TTCGAA	1 cut(s)	164
BstDEI	CTNAG	1 cut(s)	93
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstSFI	CTRYAG	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	7
Csp6I	GTAC	2 cut(s)	214, 232
CviAII	CATG	2 cut(s)	32, 223
CviJI	RGCY	7 cut(s)	7, 40, 68, 116, 184, 281, 296
CviKI_1	RGCY	7 cut(s)	7, 40, 68, 116, 184, 281, 296
CviQI	GTAC	2 cut(s)	214, 232
DdeI	CTNAG	1 cut(s)	93
Ecl136II	GAGCTC	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	227
Eco24I	GRGCYC	1 cut(s)	186
Eco53kI	GAGCTC	1 cut(s)	184
Eco88I	CYCGRG	1 cut(s)	235
EcoICRI	GAGCTC	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	227
EcoT38I	GRGCYC	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	227
FaeI	CATG	2 cut(s)	35, 226
FaiI	YATR	4 cut(s)	33, 60, 224, 355
FatI	CATG	2 cut(s)	31, 222
FriOI	GRGCYC	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	7
HapII	CCGG	1 cut(s)	101
Hin1II	CATG	2 cut(s)	35, 226
HinfI	GANTC	1 cut(s)	97
HpaII	CCGG	1 cut(s)	101
Hpy188I	TCNGA	1 cut(s)	188
Hpy188III	TCNNGA	2 cut(s)	101, 138
HpyAV	CCTTC	2 cut(s)	256, 304
HpyCH4IV	ACGT	1 cut(s)	334
HpyCH4V	TGCA	1 cut(s)	208
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	1 cut(s)	334
Hsp92II	CATG	2 cut(s)	35, 226
Kpn2I	TCCGGA	1 cut(s)	100
LmnI	GCTCC	2 cut(s)	28, 181
LpnPI	CCDG	2 cut(s)	56, 114
MaeII	ACGT	1 cut(s)	334
MboII	GAAGA	3 cut(s)	22, 58, 137
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	2 cut(s)	128, 166
MnlI	CCTC	7 cut(s)	81, 172, 204, 231, 270, 337, 340
MroI	TCCGGA	1 cut(s)	100
MseI	TTAA	1 cut(s)	330
MspI	CCGG	1 cut(s)	101
Mva1269I	GAATGC	1 cut(s)	112
MwoI	GCNNNNNNNGC	1 cut(s)	37
NlaIII	CATG	2 cut(s)	35, 226
NspV	TTCGAA	1 cut(s)	164
PaeR7I	CTCGAG	1 cut(s)	235
PctI	GAATGC	1 cut(s)	112
PfeI	GAWTC	1 cut(s)	97
Psp124BI	GAGCTC	1 cut(s)	186
PspXI	VCTCGAGB	1 cut(s)	235
RsaI	GTAC	2 cut(s)	215, 233
RsaNI	GTAC	2 cut(s)	214, 232
SacI	GAGCTC	1 cut(s)	186
SaqAI	TTAA	1 cut(s)	330
SduI	GDGCHC	1 cut(s)	186
SetI	ASST	9 cut(s)	42, 70, 186, 215, 233, 242, 267, 298, 337
SfcI	CTRYAG	1 cut(s)	300
Sfr274I	CTCGAG	1 cut(s)	235
SfuI	TTCGAA	1 cut(s)	164
SlaI	CTCGAG	1 cut(s)	235
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
Sse9I	AATT	2 cut(s)	128, 166
SstI	GAGCTC	1 cut(s)	186
StyI	CCWWGG	1 cut(s)	227
TaiI	ACGT	1 cut(s)	337
TaqI	TCGA	5 cut(s)	137, 164, 218, 236, 342
TasI	AATT	2 cut(s)	128, 166
TfiI	GAWTC	1 cut(s)	97
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
XapI	RAATTY	1 cut(s)	166
XhoI	CTCGAG	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.