Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0021545

Physical Location & Seq

Genomic Coordinates Reverse (-)

14760626 .. 14761198

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00175110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGCCATTAAGCGCCAACTTCGAGCTCCTTCAATGGCCGAACCCCAAATATGCTGGGAGGAGGAAGAGCAAGGAGAATGTAGAGAGTGGTTCTGATGAAAAGCAGCTTACAAAGTATGAGAGGAGTTTGAAAAAGTTGGGTACTAGGGATGTCTTGGGCTTGGGACCTGTGGAGGCGCCACAGGTTTGGGTTTTGAAGCCTTCGGGGTTTCGATATTTTCATAGAGGGCAAGCAGAGAAGCCTTATGAGAGGGATTATGTGGTAATGAGGCTGAAGAAAGTGAAGTTGGGGGAGCATGACAAGCTGTCGAAGAAGTTTAGGCATAAGGAAGCTCTAGTCTCTGTGCTGGGGGGAATGGTTGTTGAGATGAGGCTTAAGAAATTAGAGATTCTCAGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0031461 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

UTP15_C WD40

Protein Analysis

133

Amino Acids

15.44

Weight (kDa)

10.03

Isoelectric Point (pI)

30.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021545)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000012033
rosa_multiflora	Rmu_sc0001354.1_g000015
rosa_roxburghii	Rroxscaffold_7G00175110
rosa_samantha	Rh6AG339500 Rh7AG293700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	175
AcoI	YGGCCR	1 cut(s)	35
AcuI	CTGAAG	1 cut(s)	293
AcyI	GRCGYC	1 cut(s)	176
AfaI	GTAC	1 cut(s)	142
AflII	CTTAAG	1 cut(s)	374
AgsI	TTSAA	3 cut(s)	32, 130, 196
AhdI	GACNNNNNGTC	1 cut(s)	304
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AluBI	AGCT	5 cut(s)	25, 106, 304, 332, 399
AluI	AGCT	5 cut(s)	25, 106, 304, 332, 399
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	1 cut(s)	343
AlwNI	CAGNNNCTG	1 cut(s)	399
AoxI	GGCC	1 cut(s)	35
ApeKI	GCWGC	1 cut(s)	103
AspLEI	GCGC	2 cut(s)	14, 178
AspS9I	GGNCC	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	164
BanI	GGYRCC	1 cut(s)	175
BanII	GRGCYC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	343
BfaI	CTAG	2 cut(s)	144, 335
BfoI	RGCGCY	2 cut(s)	15, 179
BfrI	CTTAAG	1 cut(s)	374
BisI	GCNGC	1 cut(s)	104
BlsI	GCNGC	1 cut(s)	105
Bme18I	GGWCC	1 cut(s)	164
BmeRI	GACNNNNNGTC	1 cut(s)	304
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	2 cut(s)	165, 177
BsaHI	GRCGYC	1 cut(s)	176
BseGI	GGATG	1 cut(s)	154
BseRI	GAGGAG	2 cut(s)	73, 136
BseXI	GCAGC	1 cut(s)	115
BseYI	CCCAGC	2 cut(s)	53, 346
BshFI	GGCC	1 cut(s)	37
BshNI	GGYRCC	1 cut(s)	175
BsiHKAI	GWGCWC	1 cut(s)	27
BslFI	GGGAC	1 cut(s)	177
BsmAI	GTCTC	1 cut(s)	343
BsmFI	GGGAC	1 cut(s)	177
BsnI	GGCC	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	27
BspANI	GGCC	1 cut(s)	37
BspLI	GGNNCC	2 cut(s)	165, 177
BspQI	GCTCTTC	1 cut(s)	59
BspT107I	GGYRCC	1 cut(s)	175
BspTI	CTTAAG	1 cut(s)	374
BssNI	GRCGYC	1 cut(s)	176
Bst6I	CTCTTC	1 cut(s)	59
BstACI	GRCGYC	1 cut(s)	176
BstAFI	CTTAAG	1 cut(s)	374
BstC8I	GCNNGC	1 cut(s)	231
BstDEI	CTNAG	1 cut(s)	392
BstF5I	GGATG	1 cut(s)	154
BstH2I	RGCGCY	2 cut(s)	15, 179
BstHHI	GCGC	2 cut(s)	14, 178
BstMAI	GTCTC	1 cut(s)	343
BstMWI	GCNNNNNNNGC	1 cut(s)	301
BstV1I	GCAGC	1 cut(s)	115
BstXI	CCANNNNNNTGG	1 cut(s)	186
BsuRI	GGCC	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	154
Cac8I	GCNNGC	1 cut(s)	231
CaiI	CAGNNNCTG	1 cut(s)	399
CfoI	GCGC	2 cut(s)	14, 178
Cfr13I	GGNCC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	141
CviAII	CATG	1 cut(s)	296
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	1 cut(s)	392
DinI	GGCGCC	1 cut(s)	177
DriI	GACNNNNNGTC	1 cut(s)	304
EaeI	YGGCCR	1 cut(s)	35
Eam1104I	CTCTTC	1 cut(s)	59
Eam1105I	GACNNNNNGTC	1 cut(s)	304
EarI	CTCTTC	1 cut(s)	59
Ecl136II	GAGCTC	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	164
Eco53kI	GAGCTC	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	293
EcoICRI	GAGCTC	1 cut(s)	25
EcoO109I	RGGNCCY	1 cut(s)	164
EcoT38I	GRGCYC	1 cut(s)	27
EgeI	GGCGCC	1 cut(s)	177
EheI	GGCGCC	1 cut(s)	177
FaeI	CATG	1 cut(s)	299
FaiI	YATR	7 cut(s)	51, 117, 222, 246, 258, 297, 324
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	1 cut(s)	295
Fnu4HI	GCNGC	1 cut(s)	104
FokI	GGATG	1 cut(s)	161
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	1 cut(s)	104
FspBI	CTAG	2 cut(s)	144, 335
GlaI	GCGC	2 cut(s)	13, 177
GluI	GCNGC	1 cut(s)	104
GsaI	CCCAGC	2 cut(s)	57, 350
HaeII	RGCGCY	2 cut(s)	15, 179
HaeIII	GGCC	1 cut(s)	37
HhaI	GCGC	2 cut(s)	14, 178
Hin1I	GRCGYC	1 cut(s)	176
Hin1II	CATG	1 cut(s)	299
Hin6I	GCGC	2 cut(s)	12, 176
HinP1I	GCGC	2 cut(s)	12, 176
HinfI	GANTC	1 cut(s)	388
Hpy188I	TCNGA	1 cut(s)	94
Hpy188III	TCNNGA	1 cut(s)	394
HpyAV	CCTTC	2 cut(s)	38, 210
HpyF10VI	GCNNNNNNNGC	1 cut(s)	301
HpyF3I	CTNAG	1 cut(s)	392
Hsp92I	GRCGYC	1 cut(s)	176
Hsp92II	CATG	1 cut(s)	299
HspAI	GCGC	2 cut(s)	12, 176
KasI	GGCGCC	1 cut(s)	175
LguI	GCTCTTC	1 cut(s)	59
LmnI	GCTCC	3 cut(s)	30, 292, 396
LpnPI	CCDG	5 cut(s)	39, 167, 180, 332, 379
Lsp1109I	GCAGC	1 cut(s)	115
MaeI	CTAG	2 cut(s)	144, 335
MboII	GAAGA	3 cut(s)	76, 286, 322
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	1 cut(s)	380
Mly113I	GGCGCC	1 cut(s)	176
MnlI	CCTC	8 cut(s)	51, 54, 114, 166, 218, 243, 261, 363
MseI	TTAA	2 cut(s)	8, 375
MspCI	CTTAAG	1 cut(s)	374
MwoI	GCNNNNNNNGC	1 cut(s)	301
NarI	GGCGCC	1 cut(s)	176
NlaIII	CATG	1 cut(s)	299
NlaIV	GGNNCC	2 cut(s)	165, 177
PciSI	GCTCTTC	1 cut(s)	59
PfeI	GAWTC	1 cut(s)	388
PkrI	GCNGC	1 cut(s)	105
PluTI	GGCGCC	1 cut(s)	179
PpuMI	RGGWCCY	1 cut(s)	164
Psp124BI	GAGCTC	1 cut(s)	27
Psp5II	RGGWCCY	1 cut(s)	164
PspFI	CCCAGC	2 cut(s)	53, 346
PspN4I	GGNNCC	2 cut(s)	165, 177
PspPI	GGNCC	1 cut(s)	164
PspPPI	RGGWCCY	1 cut(s)	164
PstNI	CAGNNNCTG	1 cut(s)	399
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
SacI	GAGCTC	1 cut(s)	27
SapI	GCTCTTC	1 cut(s)	59
SaqAI	TTAA	2 cut(s)	8, 375
SatI	GCNGC	1 cut(s)	104
Sau96I	GGNCC	1 cut(s)	164
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	7 cut(s)	27, 108, 169, 186, 306, 334, 401
SfoI	GGCGCC	1 cut(s)	177
SinI	GGWCC	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	1 cut(s)	380
SspDI	GGCGCC	1 cut(s)	175
SspMI	CTAG	2 cut(s)	144, 335
SstI	GAGCTC	1 cut(s)	27
TaqI	TCGA	3 cut(s)	21, 211, 308
TasI	AATT	1 cut(s)	380
TfiI	GAWTC	1 cut(s)	388
Tru1I	TTAA	2 cut(s)	8, 375
Tru9I	TTAA	2 cut(s)	8, 375
TseI	GCWGC	1 cut(s)	103
TspDTI	ATGAA	2 cut(s)	111, 209
Vha464I	CTTAAG	1 cut(s)	374
VpaK11BI	GGWCC	1 cut(s)	164
XspI	CTAG	2 cut(s)	144, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.