Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0021545

Physical Location & Seq

Genomic Coordinates Forward (+)

53928288 .. 53929158

Gene Structure 871 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG339500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCCATTAAGCGCCAAATTCGAGCTCCTTCAATGGCCGAATCCCAAATATGCTGGGAGGAGGAAGAGCAAGGAGAATGTAGAGAGTGGTTATGAGGAAAAGCAGCTTACAAAGTATGAGAGGAGTTTGAAGAAGTTGGGTACTAGGGATGTCTTGGGTTTGGGACCTGTGGAGGCGCCACAGGTTTGGGTTTTGAAGCCTTCGGGGTTTCGATATTTTCATAGAGGGCAAGCAGAGAAGCCTTATGAGAGGGATTATGTGGTAATGAGGCTGAAGAAAGTGAAGTTGGGGGAGAATGACAAGCTGTCGAAGAAGTTTAGGCATAAGGAAGTTCTAATCTCTTTGTTGGGCGGAAGTCAGAATCTGGAGAATGCTGTGGCTGTGATGGAGGAATTGGTGTCGAGAAAGAAGTTGATTAAATGTGTTTTGAATTTGGATCTGGAGGAGCTGGGACTGTTGCTGATGTTTTTGCAGAAGCAATCCACGGTGCCAAGGTACTCGAGATTGTTGATGGGGTTGACACAGATGGTTGTTGAGAGGAGGCTTAAGAAATTAGAGATTCTCAGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0031461 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

UTP15_C WD40

Protein Analysis

190

Amino Acids

22.1

Weight (kDa)

9.94

Isoelectric Point (pI)

40.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UTP15_C	PF09384	80 - 179	2.2e-16	UTP15 C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021545)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000012033
rosa_multiflora	Rmu_sc0001354.1_g000015
rosa_roxburghii	Rroxscaffold_7G00175110
rosa_samantha	Rh6AG339500 Rh7AG293700

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	175, 487
AciI	CCGC	1 cut(s)	351
AclWI	GGATC	1 cut(s)	444
AcoI	YGGCCR	1 cut(s)	35
AcsI	RAATTY	2 cut(s)	17, 430
AcuI	CTGAAG	1 cut(s)	293
AcyI	GRCGYC	1 cut(s)	176
AfaI	GTAC	2 cut(s)	142, 497
AflII	CTTAAG	1 cut(s)	545
AgsI	TTSAA	4 cut(s)	32, 130, 196, 430
AhdI	GACNNNNNGTC	1 cut(s)	304
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AluBI	AGCT	5 cut(s)	25, 106, 304, 448, 570
AluI	AGCT	5 cut(s)	25, 106, 304, 448, 570
Alw21I	GWGCWC	1 cut(s)	27
AlwI	GGATC	1 cut(s)	444
AlwNI	CAGNNNCTG	2 cut(s)	364, 570
Ama87I	CYCGRG	1 cut(s)	499
AoxI	GGCC	1 cut(s)	35
ApeKI	GCWGC	1 cut(s)	103
ApoI	RAATTY	2 cut(s)	17, 430
AspLEI	GCGC	2 cut(s)	14, 178
AspS9I	GGNCC	1 cut(s)	164
AvaI	CYCGRG	1 cut(s)	499
AvaII	GGWCC	1 cut(s)	164
BanI	GGYRCC	2 cut(s)	175, 487
BanII	GRGCYC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	115
BccI	CCATC	3 cut(s)	379, 505, 520
BfaI	CTAG	1 cut(s)	144
BfoI	RGCGCY	2 cut(s)	15, 179
BfrI	CTTAAG	1 cut(s)	545
BisI	GCNGC	1 cut(s)	104
BlsI	GCNGC	1 cut(s)	105
Bme18I	GGWCC	1 cut(s)	164
BmeRI	GACNNNNNGTC	1 cut(s)	304
BmeT110I	CYCGRG	1 cut(s)	499
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	3 cut(s)	165, 177, 489
BpmI	CTGGAG	2 cut(s)	386, 461
BsaHI	GRCGYC	1 cut(s)	176
BsaJI	CCNNGG	2 cut(s)	483, 491
BseDI	CCNNGG	2 cut(s)	483, 491
BseGI	GGATG	1 cut(s)	154
BseRI	GAGGAG	4 cut(s)	73, 136, 458, 553
BseXI	GCAGC	1 cut(s)	115
BseYI	CCCAGC	2 cut(s)	53, 448
BshFI	GGCC	1 cut(s)	37
BshNI	GGYRCC	2 cut(s)	175, 487
BsiHKAI	GWGCWC	1 cut(s)	27
BsiHKCI	CYCGRG	1 cut(s)	499
BslFI	GGGAC	2 cut(s)	177, 465
BsmFI	GGGAC	2 cut(s)	177, 465
BsmI	GAATGC	1 cut(s)	376
BsnI	GGCC	1 cut(s)	37
BsoBI	CYCGRG	1 cut(s)	499
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	436
BspACI	CCGC	1 cut(s)	351
BspANI	GGCC	1 cut(s)	37
BspLI	GGNNCC	3 cut(s)	165, 177, 489
BspPI	GGATC	1 cut(s)	444
BspQI	GCTCTTC	1 cut(s)	59
BspT107I	GGYRCC	2 cut(s)	175, 487
BspTI	CTTAAG	1 cut(s)	545
BssECI	CCNNGG	2 cut(s)	483, 491
BssMI	GATC	1 cut(s)	436
BssNI	GRCGYC	1 cut(s)	176
BssT1I	CCWWGG	1 cut(s)	491
Bst4CI	ACNGT	2 cut(s)	456, 487
Bst6I	CTCTTC	1 cut(s)	59
BstACI	GRCGYC	1 cut(s)	176
BstAFI	CTTAAG	1 cut(s)	545
BstC8I	GCNNGC	1 cut(s)	231
BstDEI	CTNAG	1 cut(s)	563
BstDSI	CCRYGG	1 cut(s)	483
BstF5I	GGATG	1 cut(s)	154
BstH2I	RGCGCY	2 cut(s)	15, 179
BstHHI	GCGC	2 cut(s)	14, 178
BstKTI	GATC	1 cut(s)	439
BstMBI	GATC	1 cut(s)	436
BstV1I	GCAGC	1 cut(s)	115
BstX2I	RGATCY	1 cut(s)	436
BstXI	CCANNNNNNTGG	1 cut(s)	186
BstYI	RGATCY	1 cut(s)	436
BsuRI	GGCC	1 cut(s)	37
BtgI	CCRYGG	1 cut(s)	483
BtsCI	GGATG	1 cut(s)	154
Cac8I	GCNNGC	1 cut(s)	231
CaiI	CAGNNNCTG	2 cut(s)	364, 570
CfoI	GCGC	2 cut(s)	14, 178
Cfr13I	GGNCC	1 cut(s)	164
Csp6I	GTAC	2 cut(s)	141, 496
CviQI	GTAC	2 cut(s)	141, 496
DdeI	CTNAG	1 cut(s)	563
DinI	GGCGCC	1 cut(s)	177
DpnI	GATC	1 cut(s)	438
DpnII	GATC	1 cut(s)	436
DriI	GACNNNNNGTC	1 cut(s)	304
EaeI	YGGCCR	1 cut(s)	35
Eam1104I	CTCTTC	1 cut(s)	59
Eam1105I	GACNNNNNGTC	1 cut(s)	304
EarI	CTCTTC	1 cut(s)	59
EciI	GGCGGA	1 cut(s)	366
Ecl136II	GAGCTC	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	491
Eco24I	GRGCYC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	164
Eco53kI	GAGCTC	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	293
Eco88I	CYCGRG	1 cut(s)	499
EcoICRI	GAGCTC	1 cut(s)	25
EcoO109I	RGGNCCY	1 cut(s)	164
EcoT14I	CCWWGG	1 cut(s)	491
EcoT38I	GRGCYC	1 cut(s)	27
EgeI	GGCGCC	1 cut(s)	177
EheI	GGCGCC	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	491
FaiI	YATR	7 cut(s)	51, 93, 117, 222, 246, 258, 324
FaqI	GGGAC	2 cut(s)	177, 465
Fnu4HI	GCNGC	1 cut(s)	104
FokI	GGATG	1 cut(s)	161
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	1 cut(s)	104
FspBI	CTAG	1 cut(s)	144
GlaI	GCGC	2 cut(s)	13, 177
GluI	GCNGC	1 cut(s)	104
GsaI	CCCAGC	2 cut(s)	57, 452
GsuI	CTGGAG	2 cut(s)	386, 461
HaeII	RGCGCY	2 cut(s)	15, 179
HaeIII	GGCC	1 cut(s)	37
HhaI	GCGC	2 cut(s)	14, 178
Hin1I	GRCGYC	1 cut(s)	176
Hin6I	GCGC	2 cut(s)	12, 176
HinP1I	GCGC	2 cut(s)	12, 176
HincII	GTYRAC	1 cut(s)	519
HindII	GTYRAC	1 cut(s)	519
HinfI	GANTC	3 cut(s)	40, 361, 559
Hpy166II	GTNNAC	1 cut(s)	519
Hpy188I	TCNGA	1 cut(s)	360
Hpy188III	TCNNGA	5 cut(s)	365, 402, 440, 501, 565
Hpy8I	GTNNAC	1 cut(s)	519
HpyAV	CCTTC	2 cut(s)	38, 210
HpyCH4III	ACNGT	2 cut(s)	456, 487
HpyCH4V	TGCA	1 cut(s)	472
HpyF3I	CTNAG	1 cut(s)	563
Hsp92I	GRCGYC	1 cut(s)	176
HspAI	GCGC	2 cut(s)	12, 176
KasI	GGCGCC	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	436
LguI	GCTCTTC	1 cut(s)	59
LmnI	GCTCC	3 cut(s)	30, 445, 567
LpnPI	CCDG	7 cut(s)	39, 167, 180, 350, 425, 434, 550
Lsp1109I	GCAGC	1 cut(s)	115
MaeI	CTAG	1 cut(s)	144
MalI	GATC	1 cut(s)	438
MboI	GATC	1 cut(s)	436
MboII	GAAGA	4 cut(s)	76, 142, 286, 322
MflI	RGATCY	1 cut(s)	436
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	4 cut(s)	17, 392, 430, 551
Mly113I	GGCGCC	1 cut(s)	176
MseI	TTAA	3 cut(s)	8, 417, 546
MspCI	CTTAAG	1 cut(s)	545
Mva1269I	GAATGC	1 cut(s)	376
NarI	GGCGCC	1 cut(s)	176
NdeII	GATC	1 cut(s)	436
NlaIV	GGNNCC	3 cut(s)	165, 177, 489
PaeR7I	CTCGAG	1 cut(s)	499
PciSI	GCTCTTC	1 cut(s)	59
PctI	GAATGC	1 cut(s)	376
PfeI	GAWTC	3 cut(s)	40, 361, 559
PkrI	GCNGC	1 cut(s)	105
PluTI	GGCGCC	1 cut(s)	179
PpuMI	RGGWCCY	1 cut(s)	164
Psp124BI	GAGCTC	1 cut(s)	27
Psp5II	RGGWCCY	1 cut(s)	164
PspFI	CCCAGC	2 cut(s)	53, 448
PspN4I	GGNNCC	3 cut(s)	165, 177, 489
PspPI	GGNCC	1 cut(s)	164
PspPPI	RGGWCCY	1 cut(s)	164
PstNI	CAGNNNCTG	2 cut(s)	364, 570
PsuI	RGATCY	1 cut(s)	436
RsaI	GTAC	2 cut(s)	142, 497
RsaNI	GTAC	2 cut(s)	141, 496
SacI	GAGCTC	1 cut(s)	27
SapI	GCTCTTC	1 cut(s)	59
SaqAI	TTAA	3 cut(s)	8, 417, 546
SatI	GCNGC	1 cut(s)	104
Sau3AI	GATC	1 cut(s)	436
Sau96I	GGNCC	1 cut(s)	164
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	8 cut(s)	27, 108, 169, 186, 306, 450, 497, 572
SfoI	GGCGCC	1 cut(s)	177
Sfr274I	CTCGAG	1 cut(s)	499
SinI	GGWCC	1 cut(s)	164
SlaI	CTCGAG	1 cut(s)	499
SmlI	CTYRAG	2 cut(s)	499, 545
SmoI	CTYRAG	2 cut(s)	499, 545
Sse9I	AATT	4 cut(s)	17, 392, 430, 551
SsiI	CCGC	1 cut(s)	351
SspDI	GGCGCC	1 cut(s)	175
SspMI	CTAG	1 cut(s)	144
SstI	GAGCTC	1 cut(s)	27
StyI	CCWWGG	1 cut(s)	491
TaaI	ACNGT	2 cut(s)	456, 487
TaqI	TCGA	5 cut(s)	21, 211, 308, 401, 500
TasI	AATT	4 cut(s)	17, 392, 430, 551
TfiI	GAWTC	3 cut(s)	40, 361, 559
Tru1I	TTAA	3 cut(s)	8, 417, 546
Tru9I	TTAA	3 cut(s)	8, 417, 546
TseI	GCWGC	1 cut(s)	103
TspDTI	ATGAA	1 cut(s)	209
Vha464I	CTTAAG	1 cut(s)	545
VpaK11BI	GGWCC	1 cut(s)	164
XapI	RAATTY	2 cut(s)	17, 430
XhoI	CTCGAG	1 cut(s)	499
XspI	CTAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.