Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0020608

Physical Location & Seq

Genomic Coordinates Forward (+)

30233017 .. 30233594

Gene Structure 578 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013356

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGAGAGAAGGCGGTGGCTTCAGTCGAACCCGAAGTTTCCGAGCTTGTGGTCTTGGGATTTGCTTGATGCTTGGGCTCTGATGGGTCCCAAGGGGCCGATAAGAGAGGAGGTCGAGAAGGTTTTGATGGCGAATTTGAAGGGGAGGCCGGCGTTTGAGGCGGATGATCAGTCTGCATTGATATACTTGTTGCTGTCGCAGAAGAATCTGTGGATGGAGAAGGTTTTTGTGGAGAATTCGTATTACTTGCACGAATATTGTGCTGGATTGGTGGATCGGTATGAGGAGATGATAGAGAAGTATCATCCGGGTTTGGGGGATGAGAGGTGGCTGTTTGTGACCCATTTTGTGGGTTGCAAGCCTTGTGGGAGTTATGGGGATTATCTGGTGGAGAGGTGCTTGAGCAGCATGGAGAGGGCTTTCAATTTTGCCGATAACCAGGTGCTTAAGCTTTACGGGTTGGTGGCTGGAGGTGGTGGTCTCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009888 GO:0009969 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0021700 GO:0022622 GO:0030154 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033692 GO:0033843 GO:0034637 GO:0034645 GO:0035252 GO:0040007 GO:0042285 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071554 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0098588 GO:0098791 GO:0099402 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_34

Protein Analysis

163

Amino Acids

18.78

Weight (kDa)

5.66

Isoelectric Point (pI)

44.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_34	PF05637	16 - 124	2.2e-15	galactosyl transferase GMA12/MNN10 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020608)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0199931
rosa_laevigata	RLG00000013356
rosa_multiflora	Rmu_sc0002748.1_g000006 Rmu_sc0008253.1_g000003
rosa_samantha	Rh1AG260000 Rh7DG185400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	349
AciI	CCGC	2 cut(s)	13, 161
AclWI	GGATC	1 cut(s)	282
AcsI	RAATTY	2 cut(s)	133, 235
AcuI	CTGAAG	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	314, 349
AflII	CTTAAG	1 cut(s)	446
AgsI	TTSAA	2 cut(s)	139, 424
AjnI	CCWGG	1 cut(s)	438
AluBI	AGCT	2 cut(s)	45, 451
AluI	AGCT	2 cut(s)	45, 451
Alw26I	GTCTC	1 cut(s)	485
AlwI	GGATC	1 cut(s)	282
AoxI	GGCC	2 cut(s)	95, 146
ApeKI	GCWGC	1 cut(s)	405
ApoI	RAATTY	2 cut(s)	133, 235
AspS9I	GGNCC	2 cut(s)	86, 95
AsuC2I	CCSGG	1 cut(s)	309
AvaII	GGWCC	1 cut(s)	86
BanII	GRGCYC	1 cut(s)	79
BbvI	GCAGC	1 cut(s)	417
BccI	CCATC	3 cut(s)	76, 121, 208
BcgI	CGANNNNNNTGC	2 cut(s)	242, 276
BciT130I	CCWGG	1 cut(s)	440
BclI	TGATCA	1 cut(s)	166
BcnI	CCSGG	1 cut(s)	309
BcoDI	GTCTC	1 cut(s)	485
BfrI	CTTAAG	1 cut(s)	446
BisI	GCNGC	1 cut(s)	406
BlsI	GCNGC	1 cut(s)	407
Bme1390I	CCNGG	2 cut(s)	309, 440
Bme18I	GGWCC	1 cut(s)	86
BmgT120I	GGNCC	2 cut(s)	86, 95
BmiI	GGNNCC	3 cut(s)	87, 88, 96
BmrFI	CCNGG	2 cut(s)	309, 440
BmsI	GCATC	1 cut(s)	58
BpmI	CTGGAG	1 cut(s)	489
BpuEI	CTTGAG	1 cut(s)	421
BpuMI	CCSGG	1 cut(s)	309
BsaI	GGTCTC	1 cut(s)	485
BsaJI	CCNNGG	1 cut(s)	90
BsaWI	WCCGGW	1 cut(s)	483
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bsc4I	CCNNNNNNNGG	2 cut(s)	314, 349
Bse118I	RCCGGY	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	440
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	4 cut(s)	169, 219, 304, 325
BseLI	CCNNNNNNNGG	2 cut(s)	314, 349
BseRI	GAGGAG	2 cut(s)	122, 299
BseXI	GCAGC	1 cut(s)	417
BshFI	GGCC	2 cut(s)	97, 148
BsiSI	CCGG	3 cut(s)	149, 308, 484
BslFI	GGGAC	1 cut(s)	72
BslI	CCNNNNNNNGG	2 cut(s)	314, 349
BsmAI	GTCTC	1 cut(s)	485
BsmFI	GGGAC	1 cut(s)	72
BsnI	GGCC	2 cut(s)	97, 148
Bso31I	GGTCTC	1 cut(s)	485
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	2 cut(s)	166, 274
BspACI	CCGC	2 cut(s)	13, 161
BspANI	GGCC	2 cut(s)	97, 148
BspLI	GGNNCC	3 cut(s)	87, 88, 96
BspPI	GGATC	1 cut(s)	282
BspTI	CTTAAG	1 cut(s)	446
BspTNI	GGTCTC	1 cut(s)	485
BsrFI	RCCGGY	1 cut(s)	148
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	2 cut(s)	166, 274
BssT1I	CCWWGG	1 cut(s)	90
Bst2UI	CCWGG	1 cut(s)	440
BstAFI	CTTAAG	1 cut(s)	446
BstC8I	GCNNGC	2 cut(s)	150, 359
BstF5I	GGATG	4 cut(s)	169, 219, 304, 325
BstKTI	GATC	2 cut(s)	169, 277
BstMAI	GTCTC	1 cut(s)	485
BstMBI	GATC	2 cut(s)	166, 274
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 405
BstNI	CCWGG	1 cut(s)	440
BstSCI	CCNGG	2 cut(s)	307, 438
BstV1I	GCAGC	1 cut(s)	417
BsuRI	GGCC	2 cut(s)	97, 148
BtsCI	GGATG	4 cut(s)	169, 219, 304, 325
Cac8I	GCNNGC	2 cut(s)	150, 359
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	2 cut(s)	86, 95
CsiI	ACCWGGT	1 cut(s)	438
CspCI	CAANNNNNGTGG	2 cut(s)	346, 381
CviAII	CATG	1 cut(s)	409
DpnI	GATC	2 cut(s)	168, 276
DpnII	GATC	2 cut(s)	166, 274
EciI	GGCGGA	1 cut(s)	176
Eco130I	CCWWGG	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	79
Eco31I	GGTCTC	1 cut(s)	485
Eco47I	GGWCC	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	5
EcoO109I	RGGNCCY	1 cut(s)	86
EcoRI	GAATTC	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	438
EcoT14I	CCWWGG	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	1 cut(s)	412
FaiI	YATR	4 cut(s)	184, 282, 375, 410
FaqI	GGGAC	1 cut(s)	72
FatI	CATG	1 cut(s)	408
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	1 cut(s)	406
FokI	GGATG	4 cut(s)	176, 226, 291, 332
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	1 cut(s)	406
GluI	GCNGC	1 cut(s)	406
GsuI	CTGGAG	1 cut(s)	489
HaeIII	GGCC	2 cut(s)	97, 148
HapII	CCGG	3 cut(s)	149, 308, 484
Hin1II	CATG	1 cut(s)	412
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	1 cut(s)	205
HpaII	CCGG	3 cut(s)	149, 308, 484
Hpy188I	TCNGA	2 cut(s)	42, 81
Hpy188III	TCNNGA	1 cut(s)	115
HpyAV	CCTTC	4 cut(s)	3, 112, 133, 214
HpyCH4V	TGCA	3 cut(s)	176, 250, 357
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 405
Hsp92II	CATG	1 cut(s)	412
KflI	GGGWCCC	1 cut(s)	86
KroI	GCCGGC	1 cut(s)	148
KroNI	GCCGGC	1 cut(s)	150
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	2 cut(s)	166, 274
LpnPI	CCDG	7 cut(s)	162, 249, 321, 371, 425, 452, 453
Lsp1109I	GCAGC	1 cut(s)	417
LweI	GCATC	1 cut(s)	58
MabI	ACCWGGT	1 cut(s)	438
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	2 cut(s)	168, 276
MboI	GATC	2 cut(s)	166, 274
MboII	GAAGA	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	3 cut(s)	133, 235, 424
MnlI	CCTC	9 cut(s)	100, 103, 138, 151, 277, 318, 387, 408, 464
MroNI	GCCGGC	1 cut(s)	148
MseI	TTAA	1 cut(s)	447
MspCI	CTTAAG	1 cut(s)	446
MspI	CCGG	3 cut(s)	149, 308, 484
MspR9I	CCNGG	2 cut(s)	309, 440
MvaI	CCWGG	1 cut(s)	440
MwoI	GCNNNNNNNGC	2 cut(s)	158, 405
NaeI	GCCGGC	1 cut(s)	150
NciI	CCSGG	1 cut(s)	309
NdeII	GATC	2 cut(s)	166, 274
NgoMIV	GCCGGC	1 cut(s)	148
NlaIII	CATG	1 cut(s)	412
NlaIV	GGNNCC	3 cut(s)	87, 88, 96
NmuCI	GTSAC	1 cut(s)	337
PdiI	GCCGGC	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	205
PflMI	CCANNNNNTGG	1 cut(s)	349
PkrI	GCNGC	1 cut(s)	407
PpuMI	RGGWCCY	1 cut(s)	86
Psp5II	RGGWCCY	1 cut(s)	86
Psp6I	CCWGG	1 cut(s)	438
PspGI	CCWGG	1 cut(s)	438
PspN4I	GGNNCC	3 cut(s)	87, 88, 96
PspPI	GGNCC	2 cut(s)	86, 95
PspPPI	RGGWCCY	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	1 cut(s)	406
Sau3AI	GATC	2 cut(s)	166, 274
Sau96I	GGNCC	2 cut(s)	86, 95
ScrFI	CCNGG	2 cut(s)	309, 440
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	9 cut(s)	47, 114, 123, 225, 329, 398, 444, 453, 475
SexAI	ACCWGGT	1 cut(s)	438
SfaNI	GCATC	1 cut(s)	58
SinI	GGWCC	1 cut(s)	86
SmlI	CTYRAG	2 cut(s)	400, 446
SmoI	CTYRAG	2 cut(s)	400, 446
Sse9I	AATT	3 cut(s)	133, 235, 424
SsiI	CCGC	2 cut(s)	13, 161
SspI	AATATT	1 cut(s)	257
StyD4I	CCNGG	2 cut(s)	307, 438
StyI	CCWWGG	1 cut(s)	90
TaqI	TCGA	2 cut(s)	26, 114
TasI	AATT	3 cut(s)	133, 235, 424
TfiI	GAWTC	1 cut(s)	205
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	1 cut(s)	405
Tsp45I	GTSAC	1 cut(s)	337
Van91I	CCANNNNNTGG	1 cut(s)	349
Vha464I	CTTAAG	1 cut(s)	446
VpaK11BI	GGWCC	1 cut(s)	86
XapI	RAATTY	2 cut(s)	133, 235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.